{"EMPIAR-11392":{"imagesets":[{"segmentations":[],"name":"Tomographic reconstruction of plunge-frozen CRFK cell","directory":"data","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":7,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":9.8,"pixel_height":9.8,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Representative datasets from the manuscript \"3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning\", https://doi.org/10.1101/2022.05.16.492055 \nIncluded are tomographic reconstructions of plunge-frozen CRFK cells, as well as corresponding raw tilt series and log files.","image_width":"1284","image_height":"1324"}],"workflow_file":null,"grant_references":[{"funding_body":"German Research Foundation (DFG)","code":"SFB 958/Project A04","country":"Germany"},{"funding_body":"German Research Foundation (DFG)","code":"SFB 1114/Project C03","country":"Germany"},{"funding_body":"European Research Council (ERC)","code":"CoG 772230 “ScaleCell”","country":"Germany"},{"funding_body":"German Research Foundation (DFG)","code":"278001972 – TRR 186","country":"Germany"},{"funding_body":"German Federal Ministry for Education and Research","code":"CLS9 COMPXRAY","country":"Germany"}],"version_history":[],"title":"3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning","principal_investigator":[{"author_orcid":"0000-0003-3948-4332","middle_name":null,"organization":"Department of Biology, Chemistry, Pharmacy; Institute of Biochemistry; Free University Berlin","street":"Thielallee 63","town_or_city":"Berlin","state_or_province":"Berlin","post_or_zip":"14195","telephone":null,"fax":null,"first_name":"Helge","last_name":"Ewers","email":"helge.ewers [at] fu-berlin.de","country":"Germany","entry":"EMPIAR-11392"}],"status":"REL","deposition_date":"2023-01-26","release_date":"2023-01-30","obsolete_date":null,"update_date":"2023-01-30","corresponding_author":{"author":{"author_orcid":"0000-0003-3948-4332","middle_name":null,"organization":"Department of Biology, Chemistry, Pharmacy; Institute of Biochemistry; Free University Berlin","street":"Thielallee 63","town_or_city":"Berlin","state_or_province":"Berlin","post_or_zip":"14195","first_name":"Helge","last_name":"Ewers","country":"Germany"}},"authors":[{"author":{"name":"Dyhr MCA","author_orcid":"0000-0002-5850-7387"}},{"author":{"name":"Sadeghi M","author_orcid":"0000-0002-7698-5630"}},{"author":{"name":"Moynova R","author_orcid":null}},{"author":{"name":"Knappe C","author_orcid":null}},{"author":{"name":"Kepsutlu Çakmak B","author_orcid":"0000-0002-4668-6736"}},{"author":{"name":"Werner S","author_orcid":null}},{"author":{"name":"Schneider G","author_orcid":"0000-0001-9448-0524"}},{"author":{"name":"McNally J","author_orcid":"0000-0002-9032-1988"}},{"author":{"name":"Noe F","author_orcid":"0000-0003-4169-9324"}},{"author":{"name":"Ewers H","author_orcid":"0000-0003-3948-4332"}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Dyhr MCA","author_orcid":"0000-0002-5850-7387"},{"name":"Sadeghi M","author_orcid":"0000-0002-7698-5630"},{"name":"Moynova R","author_orcid":null},{"name":"Knappe C","author_orcid":null},{"name":"Kepsutlu Çakmak B","author_orcid":"0000-0002-4668-6736"},{"name":"Werner S","author_orcid":null},{"name":"Schneider G","author_orcid":"0000-0001-9448-0524"},{"name":"McNally J","author_orcid":"0000-0002-9032-1988"},{"name":"Noe F","author_orcid":"0000-0003-4169-9324"},{"name":"Ewers H","author_orcid":"0000-0003-3948-4332"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning","volume":null,"country":"","first_page":null,"last_page":null,"year":"2022","language":"English","doi":"10.1101/2022.05.16.492055","pubmedid":null,"details":"Representative tomograms from the publication \"3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning\". Deposited are raw image stacks, acquisition logs and tomographic reconstructions for datasets used in network evaluation and analysis.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"bioRxiv","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"23.5 GB","experiment_type":"SXT","scale":"cell","entry_doi":"10.6019/EMPIAR-11392"}}