{"EMPIAR-11178":{"imagesets":[{"segmentations":[],"name":"Unaligned, non-dose weighted movies of NTCP-YN69083Fab Data 1","directory":"data/Dataset1","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":5845,"frames_per_image":49,"frame_range_min":1,"frame_range_max":49,"voxel_type":"UNSIGNED BYTE","pixel_width":0.829,"pixel_height":0.829,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 50 e/Å2 in 49 frames\n\n'FoilHole_18713532_Data_18692370_18692372_20210120_003013_GainReference.tiff' is a super-resolution gain reference written by EPU.\nYou have to downscale it by 2 with harmonic mean. This can be done with EMAN2 as:\ne2proc2d.py --process math.reciprocal --meanshrink 2 --process \nmath.reciprocal FoilHole_18713532_Data_18692370_18692372_20210120_003013_GainReference.tiff dataset1-gain.mrc\nThe gain does not need any rotation or flipping.\n\nThe dataset was collected with AFIS. AFIS directions are available in XMLs files, although grouping was not applied during processing.\nUnfortunately, an XML file for FoilHole_18729909_Data_18692370_18692372_20210120_104541_Fractions.tiff was lost.\n\nNB: The pixel size in the TIFF header is not correct.\nAlthough the paper says 5846 movies, one of them was corrupted, so only 5845 were used for processing.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Unaligned, non-dose weighted movies of NTCP-YN69083Fab Data 2","directory":"data/Dataset2","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":15121,"frames_per_image":65,"frame_range_min":1,"frame_range_max":65,"voxel_type":"UNSIGNED BYTE","pixel_width":0.829,"pixel_height":0.829,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 64 e/Å2 in 65 frames\n\n'FoilHole_18796351_Data_18756374_18756376_20210220_200533_gain.tiff' is a super-resolution gain reference written by EPU.\nYou have to downscale it by 2 with harmonic mean. This can be done with EMAN2 as:\ne2proc2d.py --process math.reciprocal --meanshrink 2 --process \nmath.reciprocal FoilHole_18796351_Data_18756374_18756376_20210220_200533_gain.tiff dataset2-gain.mrc\nThe gain does not need any rotation or flipping.\n\nPlease exclude the first frame from motion correction and Polishing, because it is corrupted due to glitches in the K3 CDS mode.\nThe dataset was collected with AFIS. AFIS directions are available in XMLs files, although grouping was not applied during processing.\nUnfortunately, XML files for FoilHole_18775720_Data_18756374_18756376_20210220_023647_fractions.tiff and FoilHole_18816258_Data_18756374_18756376_20210221_102409_fractions.tiff were lost.\n\nNB: The pixel size in the TIFF header is not correct.","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Human NTCP in complex with YN69083 Fab","principal_investigator":[{"author_orcid":"0000-0001-6164-8896","middle_name":null,"organization":"Graduate School of Medical Life Science, Yokohama City University","street":"1-7-29, Suehiro, Tsurumi","town_or_city":"Yokohama","state_or_province":"Kanagawa","post_or_zip":"230-0045","telephone":"+81 45 581 8329","fax":null,"first_name":"Sam-Yong","last_name":"Park","email":"park [at] yokohama-cu.ac.jp","country":"Japan","entry":"EMPIAR-11178"}],"status":"REL","deposition_date":"2022-08-18","release_date":"2022-09-09","obsolete_date":null,"update_date":"2022-09-09","corresponding_author":{"author":{"author_orcid":"0000-0001-6164-8896","middle_name":null,"organization":"Graduate School of Medical Life Science, Yokohama City University","street":"1-7-29, Suehiro, Tsurumi","town_or_city":"Yokohama","state_or_province":"Kanagawa","post_or_zip":"230-0045","first_name":"Sam-Yong","last_name":"Park","country":"Japan"}},"authors":[{"author":{"name":"Park JH","author_orcid":"0000-0001-5690-9705"}},{"author":{"name":"Iwamoto M","author_orcid":null}},{"author":{"name":"Yun JH","author_orcid":null}},{"author":{"name":"Uchikubo-Kamo T","author_orcid":null}},{"author":{"name":"Son D","author_orcid":"0000-0002-0811-4972"}},{"author":{"name":"Jin Z","author_orcid":"0000-0002-6478-2967"}},{"author":{"name":"Yoshida H","author_orcid":null}},{"author":{"name":"Ohki M","author_orcid":null}},{"author":{"name":"Ishimoto N","author_orcid":null}},{"author":{"name":"Mizutani K","author_orcid":null}},{"author":{"name":"Oshima M","author_orcid":null}},{"author":{"name":"Muramatsu M","author_orcid":null}},{"author":{"name":"Wakita T","author_orcid":null}},{"author":{"name":"Shirouzu M","author_orcid":"0000-0002-7997-2149"}},{"author":{"name":"Liu K","author_orcid":null}},{"author":{"name":"Uemura T","author_orcid":null}},{"author":{"name":"Nomura N","author_orcid":"0000-0002-6330-2239"}},{"author":{"name":"Iwata S","author_orcid":"0000-0003-1735-2937"}},{"author":{"name":"Watashi K","author_orcid":null}},{"author":{"name":"Tame JRH","author_orcid":"0000-0002-9341-7280"}},{"author":{"name":"Nishizawa T","author_orcid":"0000-0001-7463-8398"}},{"author":{"name":"Lee W","author_orcid":null}},{"author":{"name":"Park SY","author_orcid":"0000-0001-6164-8896"}}],"cross_references":["EMD-31526"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Park JH","author_orcid":"0000-0001-5690-9705"},{"name":"Iwamoto M","author_orcid":null},{"name":"Yun JH","author_orcid":null},{"name":"Uchikubo-Kamo T","author_orcid":null},{"name":"Son D","author_orcid":"0000-0002-0811-4972"},{"name":"Jin Z","author_orcid":"0000-0002-6478-2967"},{"name":"Yoshida H","author_orcid":null},{"name":"Ohki M","author_orcid":null},{"name":"Ishimoto N","author_orcid":null},{"name":"Mizutani K","author_orcid":null},{"name":"Oshima M","author_orcid":null},{"name":"Muramatsu M","author_orcid":null},{"name":"Wakita T","author_orcid":null},{"name":"Shirouzu M","author_orcid":"0000-0002-7997-2149"},{"name":"Liu K","author_orcid":null},{"name":"Uemura T","author_orcid":null},{"name":"Nomura N","author_orcid":"0000-0002-6330-2239"},{"name":"Iwata S","author_orcid":"0000-0003-1735-2937"},{"name":"Watashi K","author_orcid":null},{"name":"Tame JRH","author_orcid":"0000-0002-9341-7280"},{"name":"Nishizawa T","author_orcid":"0000-0001-7463-8398"},{"name":"Lee W","author_orcid":null},{"name":"Park SY","author_orcid":"0000-0001-6164-8896"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Structural insights into the HBV receptor and bile acid transporter NTCP","volume":"606","country":"","first_page":"1027","last_page":"1031","year":"2022","language":"English","doi":"10.1038/s41586-022-04857-0","pubmedid":"35580630","details":"This entry contains raw movies for human NTCP in complex with YN69083 Fab.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature","journal_abbreviation":"Nature","issue":"7916","preprint":false}],"dataset_size":"5.5 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["7fci"],"entry_doi":"10.6019/EMPIAR-11178"}}