{"EMPIAR-11058":{"imagesets":[{"segmentations":[],"name":"Subtomograms of HDCR filament particles at bin2","directory":"data/subtomo/hdcr/subtomograms_bin2","category":"subtomograms","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":6727,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":7.04,"pixel_height":7.04,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Particle coordinates and final orientations are given in file hdcr_tm_bin2_motl_12.star in STOPGAP format.","image_width":"96","image_height":"96"},{"segmentations":[],"name":"Subtomograms of T. kivui ribosome particles at bin1","directory":"data/subtomo/ribo/subtomograms_bin1","category":"subtomograms","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":25141,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Particle coordinates and final orientations are given in file ribo_tm_bin1_motl_12.star in STOPGAP format.","image_width":"180","image_height":"180"},{"segmentations":[],"name":"Denoised tomograms of T. kivui FIB-milled cells at bin4","directory":"data/tomo/bin4_denoised","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":20,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":14.08,"pixel_height":14.08,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms were denoised with CRYO-CARE using reconstructions from odd and even frames.","image_width":"928","image_height":"928"},{"segmentations":[],"name":"Tilt series of T. kivui FIB-milled cells - session 2020-10-22","directory":"data/tomo/raw_stacks/2020-10-22/SerialEM","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":19,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series as MRC stacks containing motion-corrected and averaged frames for each tilt. Associated .mdoc files contain the metadata associated with data collection. Corresponding imod/ directory contains IMOD metadata for reconstruction.","image_width":"3712","image_height":"3712"},{"segmentations":[],"name":"Tilt series of T. kivui FIB-milled cells - session 2021-02-12","directory":"data/tomo/raw_stacks/2021-02-12/SerialEM","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":17,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt series as MRC stacks containing motion-corrected and averaged frames for each tilt. Associated .mdoc files contain the metadata associated with data collection. Corresponding imod/ directory contains IMOD metadata for reconstruction.","image_width":"3712","image_height":"3712"},{"segmentations":[],"name":"Unaligned raw frames of T. kivui FIB-milled cells tilt series - session 2020-10-22","directory":"data/tomo/raw_stacks/2020-10-22/frames","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1030,"frames_per_image":10,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"data/tomo/raw_stacks/2020-10-22/frames/*.tif","picked_particles_file_pattern":"data/subtomo/hdcr/hdcr_tm_bin2_motl_12.star","picked_particles_directory":"data/subtomo/hdcr/subtomograms_bin2","details":"File names follow the pattern <tomo_name>_<tilt_number>_<tilt_angle>_<date>.tif\nGain reference (DM4): CountRef_000_-10.0_Oct22_10.57.24.dm4\nGain reference (MRC): CountRef_000_-10.0_Oct22_10.57.24.mrc\nDefects list: defects_000_-10.0_Oct22_10.57.24.txt","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned raw frames of T. kivui FIB-milled cells tilt series - session 2021-02-12","directory":"data/tomo/raw_stacks/2021-02-12/frames","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1057,"frames_per_image":10,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":3.52,"pixel_height":3.52,"micrographs_file_pattern":"data/tomo/raw_stacks/2021-02-12/frames/*.tif","picked_particles_file_pattern":"data/subtomo/hdcr/hdcr_tm_bin2_motl_12.star","picked_particles_directory":"data/subtomo/hdcr/subtomograms_bin2","details":"File names follow the pattern <date>_<tomo_name>_<tilt_number>_<tilt_angle>.tif\nGain reference (DM4): CountRef_2021-01-12_10.54.03_tomo_01_000_-10.0.dm4\nGain reference (MRC): CountRef_2021-01-12_10.54.03_tomo_01_000_-10.0.mrc\nDefects list: defects_tomo_001_026_36.0_Jan11_12.51.02.txt","image_width":"3838","image_height":"3710"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"In situ cryo-electron tomography of T. kivui cells","principal_investigator":[{"author_orcid":"0000-0002-0941-4387","middle_name":"D.","organization":"Biozentrum, University of Basel","street":"Spitalstrasse 41","town_or_city":"Basel","state_or_province":"Basel-Stadt","post_or_zip":"4056","telephone":null,"fax":null,"first_name":"Benjamin","last_name":"Engel","email":"ricardo.righetto [at] unibas.ch","country":"Switzerland","entry":"EMPIAR-11058"}],"status":"REL","deposition_date":"2022-05-29","release_date":"2022-07-12","obsolete_date":null,"update_date":"2022-07-29","corresponding_author":{"author":{"author_orcid":"0000-0003-4247-4303","middle_name":"Diogo","organization":"Biozentrum, University of Basel","street":"Spitalstrasse 41","town_or_city":"Basel","state_or_province":"Basel-Stadt","post_or_zip":"4056","first_name":"Ricardo","last_name":"Righetto","country":"Switzerland"}},"authors":[{"author":{"name":"Dietrich HM","author_orcid":"0000-0002-4416-0271"}},{"author":{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"}},{"author":{"name":"Kumar A","author_orcid":null}},{"author":{"name":"Wietrzynski W","author_orcid":null}},{"author":{"name":"Trischler R","author_orcid":null}},{"author":{"name":"Schuller SK","author_orcid":null}},{"author":{"name":"Wagner J","author_orcid":"0000-0003-0932-7600"}},{"author":{"name":"Schwarz FM","author_orcid":null}},{"author":{"name":"Engel BD","author_orcid":"0000-0002-0941-4387"}},{"author":{"name":"Müller V","author_orcid":"0000-0001-7955-5508"}},{"author":{"name":"Schuller JM","author_orcid":"0000-0002-9121-1764"}}],"cross_references":["EMD-15053"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Dietrich HM","author_orcid":"0000-0002-4416-0271"},{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"},{"name":"Kumar A","author_orcid":null},{"name":"Wietrzynski W","author_orcid":null},{"name":"Trischler R","author_orcid":null},{"name":"Schuller SK","author_orcid":null},{"name":"Wagner J","author_orcid":"0000-0003-0932-7600"},{"name":"Schwarz FM","author_orcid":null},{"name":"Engel BD","author_orcid":"0000-0002-0941-4387"},{"name":"Müller V","author_orcid":"0000-0001-7955-5508"},{"name":"Schuller JM","author_orcid":"0000-0002-9121-1764"}],"editors":[{"name":" ","author_orcid":null}],"published":true,"j_or_nj_citation":true,"title":"Membrane-anchored HDCR nanowires drive hydrogen-powered CO<sub>2</sub> fixation","volume":"607","country":"","first_page":"823","last_page":"830","year":"2022","language":"English","doi":"10.1038/s41586-022-04971-z","pubmedid":"35859174","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature","journal_abbreviation":"Nature","issue":"7920","preprint":false}],"dataset_size":"373.4 GB","experiment_type":"EMDB","scale":"cell","entry_doi":"10.6019/EMPIAR-11058"}}