{"EMPIAR-11056":{"imagesets":[{"segmentations":[],"name":"Raw movies for Human NTCP (Q261A) - YN69202Fab (EMD-31837, PDB 7VAD)","directory":"data/Data1_PDB_7VAD_EMD_31837/20210514_shimizulab_210513_15_J1_JA/Micrographs","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":5434,"frames_per_image":64,"frame_range_min":1,"frame_range_max":64,"voxel_type":"UNSIGNED BYTE","pixel_width":0.83,"pixel_height":0.83,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 0.95 e/Å2/sec\n\nPlease use CountCDSRef_ja_115-1_0007_May14_21.29.53.mrc as a gain reference without rotation and flipping.\n\nFour digits in the file names (0000 to 0008) represent beam shift directions.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Raw movies for Bovine NTCP (Q261A) - YN69202Fab (EMD-31838, PDB 7VAE)","directory":"data/Data2_PDB_7VAE_EMD_31838/20210428_shimizulab_210427_2_H2_JA/Micrographs","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2712,"frames_per_image":64,"frame_range_min":1,"frame_range_max":64,"voxel_type":"UNSIGNED BYTE","pixel_width":0.83,"pixel_height":0.83,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 0.95 e/Å2/sec\n\nPlease use CountCDSRef_ja_92-1_0000_Apr28_20.18.32.mrc as a gain reference without rotation and flipping.\n\nFour digits in the file names (0000 to 0008) represent beam shift directions.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Raw movies for Rat NTCP (Q261A) - YN69202Fab (EMD-31839, PDB 7VAE)","directory":"data/Data3_PDB_7VAF_EMD_31839","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":9932,"frames_per_image":64,"frame_range_min":1,"frame_range_max":64,"voxel_type":"UNSIGNED BYTE","pixel_width":0.83,"pixel_height":0.83,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 0.95 e/Å2/sec\n\nThis structure was solved from datasets collected in three sessions.\n\nPlease use CountCDSRef_ja_73-1_0000_Apr15_19.29.35.mrc (for 20210415_shimizulab_210414_2_P2_JA), CountCDSRef_ja_119-1_0000_Apr29_11.04.43.mrc (for 20210429_shimizulab_210427_1_H1_JA) and CountCDSRef_ja_111-1_0000_Apr30_22.44.30.mrc (for 20210430_shimizulab_210430_9_E3_JA) as a gain reference without rotation and flipping.\n\nFour digits in the file names (0000 to 0008) represent beam shift directions.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Raw movies for Human NTCP (Q261A) - YN69202Fab-myr-preS1 (EMD-31840, PDB 7VAF)","directory":"data/Data4_PDB_7VAG_EMD_31840","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":7496,"frames_per_image":64,"frame_range_min":1,"frame_range_max":64,"voxel_type":"UNSIGNED BYTE","pixel_width":0.83,"pixel_height":0.83,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 0.95 e/Å2/sec\n\nThis structure was solved from datasets collected in two sessions.\n\nPlease use CountCDSRef_ja_147-1_0000_Jul22_19.18.51.mrc (for 20210722_shimizulab_210720_4_F4_JA) and CountCDSRef_ja_159-1_0000_Aug06_15.07.36.mrc (for 20210806_shimizulab_210804_1_B1_JA) as a gain reference without rotation and flipping.\n\nFour digits in the file names (0000 to 0008) represent beam shift directions.","image_width":"5760","image_height":"4092"},{"segmentations":[],"name":"Raw movies for Human NTCP (wildtype) - YN69202Fab (EMD-32759, PDB 7WSI)","directory":"data/Data5_PDB_7WSI_EMD_32759/20211218_shimizulab_211217_6_J2_JA/Micrographs","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":3411,"frames_per_image":64,"frame_range_min":1,"frame_range_max":64,"voxel_type":"UNSIGNED BYTE","pixel_width":0.83,"pixel_height":0.83,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"HT: 300 kV\nCs: 2.7 mm\nFlux: 0.95 e/Å2/sec\n\nPlease use CountCDSRef_ja_125-1_0000_Dec18_16.34.47.mrc as a gain reference without rotation and flipping.\n\nFour digits in the file names (0000 to 0008) represent beam shift directions.","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Structure of bile acid transporter NTCP","principal_investigator":[{"author_orcid":"0000-0002-4422-4044","middle_name":null,"organization":"Graduate School of Pharmaceutical Sciences, The University of Tokyo","street":"7-3-1, Hongo","town_or_city":"Bunkyo","state_or_province":"Tokyo","post_or_zip":"113-0033","telephone":null,"fax":null,"first_name":"Umeharu","last_name":"Ohto","email":"umeji [at] mol.f.u-tokyo.ac.jp","country":"Japan","entry":"EMPIAR-11056"}],"status":"REL","deposition_date":"2022-05-18","release_date":"2022-06-13","obsolete_date":null,"update_date":"2022-06-13","corresponding_author":{"author":{"author_orcid":"0000-0002-4422-4044","middle_name":null,"organization":"Graduate School of Pharmaceutical Sciences, The University of Tokyo","street":"7-3-1, Hongo","town_or_city":"Bunkyo","state_or_province":"Tokyo","post_or_zip":"113-0033","first_name":"Umeharu","last_name":"Ohto","country":"Japan"}},"authors":[{"author":{"name":"Asami J","author_orcid":null}},{"author":{"name":"Shimizu T","author_orcid":"0000-0002-0547-8922"}},{"author":{"name":"Ohto U","author_orcid":"0000-0002-4422-4044"}}],"cross_references":["EMD-31840","EMD-32759","EMD-31837","EMD-31839","EMD-31838"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Asami J","author_orcid":null},{"name":"Kimura KT","author_orcid":null},{"name":"Fujita-Fujiharu Y","author_orcid":"0000-0002-2411-5473"},{"name":"Ishida H","author_orcid":null},{"name":"Zhang Z","author_orcid":null},{"name":"Nomura Y","author_orcid":null},{"name":"Liu K","author_orcid":null},{"name":"Uemura T","author_orcid":null},{"name":"Sato Y","author_orcid":null},{"name":"Ono M","author_orcid":null},{"name":"Yamamoto M","author_orcid":null},{"name":"Noda T","author_orcid":null},{"name":"Shigematsu H","author_orcid":"0000-0003-3951-8651"},{"name":"Drew D","author_orcid":"0000-0001-8866-6349"},{"name":"Iwata S","author_orcid":null},{"name":"Shimizu T","author_orcid":"0000-0002-0547-8922"},{"name":"Nomura N","author_orcid":"0000-0002-6330-2239"},{"name":"Ohto U","author_orcid":"0000-0002-4422-4044"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Structure of bile acid transporter NTCP crucial for hepatitis B virus entry","volume":null,"country":"","first_page":null,"last_page":null,"year":"2022","language":"English","doi":"10.1038/s41586-022-04845-4","pubmedid":"35580629","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature","journal_abbreviation":"Nature","issue":null,"preprint":false}],"dataset_size":"8.6 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["7vag","7wsi","7vad","7vaf","7vae"],"entry_doi":"10.6019/EMPIAR-11056"}}