{"EMPIAR-10805":{"imagesets":[{"segmentations":[],"name":"reconstructed electron tomographic volumes of axons from human cerebral organoids expressing L1CAM-GFP","directory":"data/tomograms","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":8,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":7.4,"pixel_height":7.4,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tomograms were reconstructed with IMOD using back projection with a SIRT-like filter from stacks aligned by patch tracking, binning 2.","image_width":"1920","image_height":"1854"},{"segmentations":[],"name":"raw image frames of tilt series acquired on axons from human cerebral organoids expressing L1CAM-GFP","directory":"data/raw_data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":8,"frames_per_image":4,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":3.7,"pixel_height":3.7,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"8 folders, each corresponding to one tilt series and containing raw image frames as well as metadata in an .mdoc file. The image frames are not aligned and not gain-corrected. An additional folder contains the gain reference and defect file.","image_width":"3710","image_height":"3838"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"electron cryo-tomograms of axons from human cerebral organoids, expressing L1CAM-GFP","principal_investigator":[{"author_orcid":"0000-0002-2778-3936","middle_name":null,"organization":"University of Bern, Institute of Biochemistry and Molecular Medicine","street":"Bühlstrasse 28","town_or_city":"Bern","state_or_province":"N/A","post_or_zip":"3011","telephone":null,"fax":null,"first_name":"Wanda","last_name":"Kukulski","email":"wanda.kukulski [at] ibmm.unibe.ch","country":"Switzerland","entry":"EMPIAR-10805"},{"author_orcid":"0000-0003-2324-8853","middle_name":"A","organization":"MRC Laboratory of Molecular Biology","street":"Francis Crick Avenue","town_or_city":"Cambridge","state_or_province":"Cambridgeshire","post_or_zip":"CB2 0QH","telephone":null,"fax":null,"first_name":"Madeline","last_name":"Lancaster","email":"mlancast [at] mrc-lmb.cam.ac.uk","country":"United Kingdom","entry":"EMPIAR-10805"}],"status":"REL","deposition_date":"2021-07-14","release_date":"2021-11-01","obsolete_date":null,"update_date":"2021-11-01","corresponding_author":{"author":{"author_orcid":"0000-0002-2778-3936","middle_name":null,"organization":"University of Bern, Institute of Biochemistry and Molecular Medicine","street":"Bühlstrasse 28","town_or_city":"Bern","state_or_province":"N/A","post_or_zip":"3011","first_name":"Wanda","last_name":"Kukulski","country":"Switzerland"}},"authors":[{"author":{"name":"Hoffmann P","author_orcid":"0000-0003-3421-6363"}},{"author":{"name":"Giandomenico S","author_orcid":"0000-0003-4235-8353"}},{"author":{"name":"Ganeva I","author_orcid":"0000-0003-3221-2502"}},{"author":{"name":"Wozny M","author_orcid":"0000-0001-9359-3287"}},{"author":{"name":"Sutcliffe M","author_orcid":null}},{"author":{"name":"Lancaster M","author_orcid":"0000-0003-2324-8853"}},{"author":{"name":"Kukulski W","author_orcid":"0000-0002-2778-3936"}}],"cross_references":["EMD-13196"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Hoffmann P","author_orcid":"0000-0003-3421-6363"},{"name":"Giandomenico S","author_orcid":"0000-0003-4235-8353"},{"name":"Ganeva I","author_orcid":"0000-0003-3221-2502"},{"name":"Wozny M","author_orcid":"0000-0001-9359-3287"},{"name":"Sutcliffe M","author_orcid":null},{"name":"Lancaster M","author_orcid":"0000-0003-2324-8853"},{"name":"Kukulski W","author_orcid":"0000-0002-2778-3936"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Electron cryo-tomography reveals the subcellular architecture of growing axons in human brain organoids","volume":"10","country":"","first_page":null,"last_page":null,"year":"2021","language":"English","doi":"10.7554/eLife.70269","pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"eLife","journal_abbreviation":"Elife","issue":null,"preprint":false}],"dataset_size":"30.5 GB","experiment_type":"EMDB","scale":null,"entry_doi":"10.6019/EMPIAR-10805"}}