{"EMPIAR-10712":{"imagesets":[{"segmentations":[],"name":"unaligned multi-frame micrographs from a dataset collected without grid tilting","directory":"data/set1_noTilt/raw_micrographs","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":5950,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":1.04,"pixel_height":1.04,"micrographs_file_pattern":"data/set1_noTilt/micrographs_ctf_motioncorr/*mrc","picked_particles_file_pattern":"data/refined_particles_combined.star","picked_particles_directory":"data/set1_noTilt/particles","details":"set1_noTilt/raw_micrographs/ == unaligned multi-frame micrographs, not gain-corrected\n == \nset1_noTilt/set1_GainReference.mrc == gain reference for the dataset\nset1_noTilt/set1_micrographs_ctf.star == relion 3.1 star file describing the gain-corrected dose-weighed motion-corrected micrographs\nset1_noTilt/micrographs_ctf_motioncorr/ == gain-corrected dose-weighed motion-corrected micrographs\n == \nset1_noTilt/coordinates_initial_cryolo/ == particle coordinates picked by cryolo\nset1_noTilt/coordinates_final_refined/ == particle coordinates for the particles used in the final reconstruction\nset1_noTilt/particles/ == particles used in the final reconstruction, Bayesian-polished by relion 3.1\n == \n./refined_particles_combined.star == relion 3.1 star file describing the particles after the final reconstruction, including angular assignment\n == \n./cryolo_YOLO_RNF213.h5 == cryolo network model used for initial particles picking\n./cryolo_YOLO_RNF213_config.json == config file for the cryolo network model used for initial particles picking\n./MTF_K2summit_300kV.star == MTF file used for MTF correction for this dataset","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"unaligned multi-frame micrographs from a dataset collected with a 30 deg grid tilt","directory":"data/set2_withTilt/raw_micrographs","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":3055,"frames_per_image":40,"frame_range_min":1,"frame_range_max":40,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":1.052,"pixel_height":1.052,"micrographs_file_pattern":"data/set2_withTilt/micrographs_ctf_motioncorr/*mrc","picked_particles_file_pattern":"data/refined_particles_combined.star","picked_particles_directory":"data/set2_withTilt/particles","details":"set2_withTilt/raw_micrographs/ == unaligned multi-frame micrographs, not gain-corrected\n == \nset2_withTilt/set2_GainReference.mrc == gain reference for the dataset\nset2_withTilt/set2_micrographs_ctf.star == relion 3.1 star file describing the gain-corrected dose-weighed motion-corrected micrographs\nset2_withTilt/micrographs_ctf_motioncorr/ == gain-corrected dose-weighed motion-corrected micrographs\n == \nset2_withTilt/coordinates_initial_3Dpick/ == particle coordinates picked by the relion 3D template picker\nset2_withTilt/coordinates_final_refined/ == particle coordinates for the particles used in the final reconstruction\nset2_withTilt/particles/ == particles used in the final reconstruction, Bayesian-polished by relion 3.1\n == \n./refined_particles_combined.star == relion 3.1 star file describing the particles after the final reconstruction, including angular assignment\n == \n./mtf_k3_standard_300kV_FL2.star == MTF file used for MTF correction for this dataset","image_width":"5760","image_height":"4092"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Transmission electron micrographs of mouse RNF213 incubated with ATPγS","principal_investigator":[{"author_orcid":"0000-0003-1582-6924","middle_name":null,"organization":"IMP Vienna","street":null,"town_or_city":"Vienna","state_or_province":null,"post_or_zip":"1030","telephone":null,"fax":null,"first_name":"Tim","last_name":"Clausen","email":"tim.clausen [at] imp.ac.at","country":"Austria","entry":"EMPIAR-10712"}],"status":"REL","deposition_date":"2020-06-17","release_date":"2022-06-14","obsolete_date":null,"update_date":"2022-06-14","corresponding_author":{"author":{"author_orcid":"0000-0003-0293-1063","middle_name":null,"organization":"IMP Vienna","street":"Campus-Vienna-Biocenter 1","town_or_city":"Vienna","state_or_province":"Vienna","post_or_zip":"1030","first_name":"Juraj","last_name":"Ahel","country":"Austria"}},"authors":[{"author":{"name":"Ahel J","author_orcid":"0000-0003-0293-1063"}},{"author":{"name":"Weis F","author_orcid":"0000-0002-8137-3532"}},{"author":{"name":"Clausen T","author_orcid":"0000-0003-1582-6924"}}],"cross_references":["EMD-12932"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Ahel J","author_orcid":"0000-0003-0293-1063"},{"name":"Clausen T","author_orcid":"0000-0003-1582-6924"},{"name":"Virdee S","author_orcid":"0000-0002-7052-9802"},{"name":"Fletcher AJ","author_orcid":"0000-0003-1742-6588"},{"name":"Grabarczyk DB","author_orcid":"0000-0003-0216-7085"},{"name":"Deszcz L","author_orcid":null},{"name":"Lehner A","author_orcid":null},{"name":"Roitinger E","author_orcid":"0000-0002-3405-7801"}],"editors":[],"published":false,"j_or_nj_citation":true,"title":"E3 ubiquitin ligase RNF213 employs a non-canonical zinc finger active site and is allosterically regulated by ATP","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":null,"doi":null,"pubmedid":null,"details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"BiorXiv","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"2.3 TB","experiment_type":"EMDB","scale":"molecule","related_pdb_entries":["7oim"],"entry_doi":"10.6019/EMPIAR-10712"}}