{"EMPIAR-10685":{"imagesets":[{"segmentations":[],"name":"Unaligned Tilt-series of JCVI-Syn3A (large cell)","directory":"data/stack","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1,"frames_per_image":61,"frame_range_min":1,"frame_range_max":61,"voxel_type":"32 BIT FLOAT","pixel_width":4.265,"pixel_height":4.265,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Tilt-series is dose-weighted and motion-corrected using Warp. The last two frames of each tilt were removed due to excessive motion.","image_width":"3710","image_height":"3838"},{"segmentations":[],"name":"Multi-frame micrographs of each tilt for tilt-series of JCVI-Syn3A (large cell)","directory":"data/frames","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":61,"frames_per_image":10,"frame_range_min":1,"frame_range_max":10,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":4.265,"pixel_height":4.265,"micrographs_file_pattern":"data/frames/Jan04*.tif","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Dark-subtracted frames from serialEM. Last two frames should be excluded due to excessive motion. Counting mode gain-reference is included in the same directory.","image_width":"3710","image_height":"3838"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-electron tomography of JCVI-Syn3A (large cell)","principal_investigator":[{"author_orcid":"0000-0003-4677-9809","middle_name":null,"organization":"UC San Diego","street":"9500 Gilman Dr.","town_or_city":"La Jolla","state_or_province":"CA","post_or_zip":"92093","telephone":null,"fax":null,"first_name":"Elizabeth","last_name":"Villa","email":"evilla [at] ucsd.edu","country":"United States","entry":"EMPIAR-10685"}],"status":"REL","deposition_date":"2021-03-25","release_date":"2021-08-27","obsolete_date":null,"update_date":"2021-08-27","corresponding_author":{"author":{"author_orcid":"0000-0001-8228-2133","middle_name":null,"organization":"UC San Diego","street":"9500 Gilman Dr.","town_or_city":"La Jolla","state_or_province":"California","post_or_zip":"92093","first_name":"Vinson","last_name":"Lam","country":"United States"}},"authors":[{"author":{"name":"Lam V","author_orcid":"0000-0001-8228-2133"}},{"author":{"name":"Villa E","author_orcid":"0000-0003-4677-9809"}},{"author":{"name":"Thornburg ZR","author_orcid":"0000-0003-0442-9042"}}],"cross_references":["EMD-23660"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Gilbert BR","author_orcid":null},{"name":"Thornburg ZR","author_orcid":"0000-0003-0442-9042"},{"name":"Lam V","author_orcid":"0000-0001-8228-2133"},{"name":"Rashid FM","author_orcid":null},{"name":"Glass JI","author_orcid":null},{"name":"Villa E","author_orcid":"0000-0003-4677-9809"},{"name":"Dame RT","author_orcid":null},{"name":"Luthey-Schulten Z","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps","volume":"8","country":"","first_page":null,"last_page":null,"year":"2021","language":"English","doi":"10.3389/fmolb.2021.644133","pubmedid":"34368224","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Frontiers in molecular biosciences","journal_abbreviation":"Front Mol Biosci","issue":null,"preprint":false}],"dataset_size":"6.5 GB","experiment_type":"EMDB","scale":null,"entry_doi":"10.6019/EMPIAR-10685"}}