{"EMPIAR-10533":{"imagesets":[{"segmentations":[],"name":"Infected h3AC traditional transmission electron microscopy at 2 day post infection","directory":"data/Infected h3ACs","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":251,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Infected h3AC 2 day post infection transmission electron microscopy. \nTotal 5 h3ACs were taken and their pictures were stored under the infected h3AC as different numbers. \nFor example, infected.h3AC.Figure.4.A means one of the infected h3AC and the pictures were used to make Figure 4.A of the research paper.","image_width":"4096","image_height":"4224"},{"segmentations":[],"name":"Infected h3BC traditional transmission electron microscopy at 2 day post infection","directory":"data/Infected h3BC","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":81,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Infected h3BC were taken at 2 day post infection.\n\nOnly one h3BC was taken as picture.","image_width":"4096","image_height":"4224"},{"segmentations":[],"name":"Uninfected h3ACs 2D traditional electron microscopy","directory":"data/Control h3ACs","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":326,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Control h3ACs were taken at P1-2 from donors. \nTotal number of h3ACs were 20. The subdirectory was divided into 3 folders with the name of the date of picture taken. \n0724(2020) 5 h3ACs were taken and 55 pictures existed \n0811(2020) 8 h3ACs were taken and 122 pictures existed \n0812(2020) 7 h3ACs were taken and 149 pictures existed \nFor 0811 and 0812 folders, there is also an .emi and .ser file which is the original file of the TEM.","image_width":"4096","image_height":"4224"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"SARS-CoV-2 infection in human adult lung alveolar stem cells","principal_investigator":[{"author_orcid":null,"middle_name":null,"organization":"Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology","street":null,"town_or_city":"Daejeon","state_or_province":null,"post_or_zip":"34141","telephone":null,"fax":null,"first_name":"Young Seok","last_name":"Ju","email":"ysju [at] kaist.ac.kr","country":"Korea, South","entry":"EMPIAR-10533"},{"author_orcid":null,"middle_name":null,"organization":"Division of Viral Disease Research, Center for Infectious Diseases Research, Korea National Institute of Health, Korea Centers for Disease Control and Prevention","street":null,"town_or_city":"Cheongju","state_or_province":null,"post_or_zip":"28159","telephone":null,"fax":null,"first_name":"Byeong-Sun","last_name":"Choi","email":"byeongsun [at] korea.kr","country":"Korea, South","entry":"EMPIAR-10533"},{"author_orcid":null,"middle_name":null,"organization":"Center for Vascular Research, Institute for Basic Science","street":null,"town_or_city":"Daejeon","state_or_province":null,"post_or_zip":"34126","telephone":null,"fax":null,"first_name":"Gou Young","last_name":"Koh","email":"gykoh [at] kaist.ac.kr","country":"Korea, South","entry":"EMPIAR-10533"},{"author_orcid":null,"middle_name":null,"organization":"Department of Thoracic and Cardiovascular Surgery, Seoul National University Hospital","street":null,"town_or_city":"Seoul","state_or_province":null,"post_or_zip":"03080","telephone":null,"fax":null,"first_name":"Young Tae","last_name":"Kim","email":"ytkim [at] snu.ac.kr","country":"Korea, South","entry":"EMPIAR-10533"}],"status":"REL","deposition_date":"2020-10-09","release_date":"2020-11-18","obsolete_date":null,"update_date":"2025-12-22","corresponding_author":{"author":{"author_orcid":null,"middle_name":null,"organization":"Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge","street":null,"town_or_city":"Cambridge","state_or_province":null,"post_or_zip":"CB2 A0W","first_name":"Joo-Hyeon","last_name":"Lee","country":"United Kingdom"}},"authors":[{"author":{"name":"Youk J","author_orcid":null}},{"author":{"name":"Kim T","author_orcid":null}},{"author":{"name":"Evans KV","author_orcid":"0000-0002-8276-1211"}},{"author":{"name":"Jeong YI","author_orcid":null}},{"author":{"name":"Hur Y","author_orcid":null}},{"author":{"name":"Hong SP","author_orcid":null}},{"author":{"name":"Kim JH","author_orcid":null}},{"author":{"name":"Yi K","author_orcid":null}},{"author":{"name":"Kim SY","author_orcid":null}},{"author":{"name":"Na KJ","author_orcid":null}},{"author":{"name":"Bleazard T","author_orcid":null}},{"author":{"name":"Kim HM","author_orcid":null}},{"author":{"name":"Fellows M","author_orcid":null}},{"author":{"name":"Mahbubani KT","author_orcid":null}},{"author":{"name":"Saeb-Parsy K","author_orcid":"0000-0002-0633-3696"}},{"author":{"name":"Kim SY","author_orcid":null}},{"author":{"name":"Kim YT","author_orcid":null}},{"author":{"name":"Koh GY","author_orcid":null}},{"author":{"name":"Choi BS","author_orcid":null}},{"author":{"name":"Ju YS","author_orcid":"0000-0002-5514-4189"}},{"author":{"name":"Lee JH","author_orcid":null}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Youk J","author_orcid":null},{"name":"Kim T","author_orcid":null},{"name":"Evans KV","author_orcid":"0000-0002-8276-1211"},{"name":"Jeong YI","author_orcid":null},{"name":"Hur Y","author_orcid":null},{"name":"Hong SP","author_orcid":null},{"name":"Kim JH","author_orcid":null},{"name":"Yi K","author_orcid":null},{"name":"Kim SY","author_orcid":null},{"name":"Na KJ","author_orcid":null},{"name":"Bleazard T","author_orcid":null},{"name":"Kim HM","author_orcid":null},{"name":"Fellows M","author_orcid":null},{"name":"Mahbubani KT","author_orcid":null},{"name":"Saeb-Parsy K","author_orcid":"0000-0002-0633-3696"},{"name":"Kim SY","author_orcid":null},{"name":"Kim YT","author_orcid":null},{"name":"Koh GY","author_orcid":null},{"name":"Choi BS","author_orcid":null},{"name":"Ju YS","author_orcid":"0000-0002-5514-4189"},{"name":"Lee JH","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2","volume":"27","country":"","first_page":"905","last_page":"919.e10","year":"2020","language":"English","doi":"10.1016/j.stem.2020.10.004","pubmedid":"33142113","details":"SARS-CoV-2 infected human 3D alveolar culture (h3AC) and non-infected h3ACs were taken under transmission electron microscopy. h3ACs were fixed, but not stained with lead citrate and uranyl nitrate. 100nm sections were taken under 120kV TEM Tecnai G2.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Cell stem cell","journal_abbreviation":"Cell Stem Cell","issue":"6","preprint":false}],"dataset_size":"20.8 GB","experiment_type":"Exception","scale":null,"entry_doi":"10.6019/EMPIAR-10533"}}