{"EMPIAR-10484":{"imagesets":[{"segmentations":[{"file":"data/Level1_v2_label0.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level1_v2_label1.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label0.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label1.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label2.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label4.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label5.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label6.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null},{"file":"data/Level2_label7.rec","description":"Each file is a different class of objects as arbitrarily defined by the annotator.","original_files":null,"original_format":null,"entry":null}],"name":"Trypanosoma","directory":"data","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":180,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"The data.h5 file is the data output from SuRVoS.\nIt is in the same orientation as the annotations.\n\nThe Easy_Level*_Label*.rec files are the annotation output from SuRVoS.\nEach file is a different class of objects as arbitrarily defined by the annotator.\nThey are all in the same orientations as the data.h5 file.\n\nThe .mpg file is the movie showing these data that was provided for publication.\nIt was created in Chimera.\nThe movie is open access, but if made avaialble anywhere should indicate the publication it came from:\nLuengo, I., Darrow, M. C., Spink, M. C., Sun, Y., Dai, W., He, C. Y., et al.\nSuRVoS: Super-Region Volume Segmentation Workbench.\nJ Struct Biol (198), doi: 10.1016/j.jsb.2017.02.007 (2017).","image_width":null,"image_height":null}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Soft X-ray Cryo Tomography of Trypanosoma","principal_investigator":[{"author_orcid":"0000-0002-8438-1415","middle_name":null,"organization":"Diamond Light Source","street":null,"town_or_city":"Oxford","state_or_province":null,"post_or_zip":"OX11 ODE","telephone":null,"fax":null,"first_name":"Mark","last_name":"Basham","email":"mark.basham [at] diamond.ac.uk","country":"United Kingdom","entry":"EMPIAR-10484"}],"status":"REL","deposition_date":"2019-11-19","release_date":"2023-10-17","obsolete_date":null,"update_date":"2023-10-17","corresponding_author":{"author":{"author_orcid":"0000-0002-8438-1415","middle_name":null,"organization":"Diamond Light Source","street":null,"town_or_city":"Oxford","state_or_province":null,"post_or_zip":"OX11 ODE","first_name":"Mark","last_name":"Basham","country":"United Kingdom"}},"authors":[{"author":{"name":"Darrow MC","author_orcid":null}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Luengo I","author_orcid":null},{"name":"Darrow MC","author_orcid":null},{"name":"Spink MC","author_orcid":null},{"name":"Sun Y","author_orcid":null},{"name":"Dai W","author_orcid":null},{"name":"He CY","author_orcid":null},{"name":"Chiu W","author_orcid":null},{"name":"Pridmore T","author_orcid":null},{"name":"Ashton AW","author_orcid":null},{"name":"Duke EMH","author_orcid":null},{"name":"Basham M","author_orcid":"0000-0002-8438-1415"},{"name":"French AP","author_orcid":"0000-0002-8313-2898"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"SuRVoS: Super-Region Volume Segmentation workbench","volume":"198","country":"","first_page":"43","last_page":"53","year":"2017","language":"English","doi":"10.1016/j.jsb.2017.02.007","pubmedid":"28246039","details":"Soft X-ray Cryo Tomogramphy of Trypanosoma","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Journal of structural biology","journal_abbreviation":"J. Struct. Biol.","issue":"1","preprint":false}],"dataset_size":"1.5 GB","experiment_type":"SXT","scale":"organism","entry_doi":"10.6019/EMPIAR-10484"}}