{"EMPIAR-10463":{"imagesets":[{"segmentations":[],"name":"Survey SBF SEM image showing the position of the 5 imaged ROIs at the start of the run","directory":"data","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":742.5,"pixel_height":742.5,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Survey image showing the position of the 5 ROIs imaged (ROI00, 01-4) if opened in Digital Micrograph","image_width":"5000","image_height":"5000"},{"segmentations":[],"name":"Low magnification raw SBF SEM overview images (ROI00) of Toxoplasma Gondii tachizoites in a Zebrafish hindbrain","directory":"data/P400_SBF_SEM_F1S1_run17_EMPIAR-10463/ROI_00","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":354,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":504.0,"pixel_height":504.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Low magnification overview images (ROI00) linked to higher magnification images in ROI01. Imaged at 2kV, 2us dwell, variable pressure 5Pa.","image_width":"6500","image_height":"5000"},{"segmentations":[],"name":"High magnification raw SBF SEM images (ROI01) of Toxoplasma Gondii tachizoites in a Zebrafish hindbrain","directory":"data/P400_SBF_SEM_F1S1_run17_EMPIAR-10463/ROI_01","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":354,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":60.0,"pixel_height":60.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"High magnification images (ROI01) linked to lower magnification images in ROI00. Imaged at 2kV, 2us dwell, variable pressure 5Pa.","image_width":"15000","image_height":"8000"},{"segmentations":[],"name":"High magnification raw SBF SEM images (ROI02) of Toxoplasma Gondii tachizoites in a Zebrafish hindbrain","directory":"data/P400_SBF_SEM_F1S1_run17_EMPIAR-10463/ROI_02","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":354,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":64.0,"pixel_height":64.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"High magnification images (ROI02) linked to lower magnification images in ROI00. Imaged at 2kV, 2us dwell, variable pressure 5Pa.","image_width":"8000","image_height":"8000"},{"segmentations":[],"name":"High magnification raw SBF SEM images (ROI03) of Toxoplasma Gondii tachizoites in a Zebrafish hindbrain","directory":"data/P400_SBF_SEM_F1S1_run17_EMPIAR-10463/ROI_03","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":354,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":64.0,"pixel_height":64.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"High magnification images (ROI03) linked to lower magnification images in ROI00. Imaged at 2kV, 2us dwell, variable pressure 5Pa.","image_width":"4000","image_height":"8000"},{"segmentations":[],"name":"High magnification raw SBF SEM images (ROI04) of Toxoplasma Gondii tachizoites in a Zebrafish hindbrain","directory":"data/P400_SBF_SEM_F1S1_run17_EMPIAR-10463/ROI_04","category":"micrographs - single frame","header_format":"DM4","data_format":"DM4","num_images_or_tilt_series":354,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":78.0,"pixel_height":78.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"High magnification images (ROI04) linked to lower magnification images in ROI00. Imaged at 2kV, 2us dwell, variable pressure 5Pa.","image_width":"3000","image_height":"3000"},{"segmentations":[],"name":"Low magnification aligned SBF SEM images (ROI00) with segmentation of middle section of Toxoplasma Gondii tachizoites in a Zebrafish hindbrain","directory":"data/ROI00_composite","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":354,"frames_per_image":2,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":500.0,"pixel_height":500.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Low magnification aligned (least square in TrakEM2) overview SBF SEM images (ROI00) and manual segmentation (channel 2) of middle sections of Toxoplasma tachizoites. Used for correlation with fish 1 (see Biostudies link). 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