{"EMPIAR-10459":{"imagesets":[{"segmentations":[],"name":"Aligned FIB image stack of a macrophage containing 2 Toxoplasma Gondii tachizoites","directory":"data","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":3200,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":50.0,"pixel_height":50.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Images were acquired at 5 nm isotropic resolution throughout the region of interest, using a 4.2 us dwell time. During acquisition the SEM was operated at an accelerating voltage of 1.5 kV with 1.5 nA current.","image_width":"3437","image_height":"3800"},{"segmentations":[],"name":"Raw FIB image stack of a macrophage containing 2 Toxoplasma Gondii tachizoites - part 1","directory":"data/Raw_part_1","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2062,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":50.0,"pixel_height":50.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"First half of the raw data. See part 2 for second half. Images were acquired at 5 nm isotropic resolution throughout the region of interest, using a 4.2 us dwell time. During acquisition the SEM was operated at an accelerating voltage of 1.5 kV with 1.5 nA current.","image_width":"12032","image_height":"12032"},{"segmentations":[],"name":"Raw FIB image stack of a macrophage containing 2 Toxoplasma Gondii tachizoites - part 2","directory":"data/Raw_part_2","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1963,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":50.0,"pixel_height":50.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Second half of the raw data. See part 1 for first half. Images were acquired at 5 nm isotropic resolution throughout the region of interest, using a 4.2 us dwell time. During acquisition the SEM was operated at an accelerating voltage of 1.5 kV with 1.5 nA current.","image_width":"12032","image_height":"12032"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"FIB SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites","principal_investigator":[{"author_orcid":"0000-0002-5703-2922","middle_name":null,"organization":"Francis Crick Institute, Electron Microscopy STP","street":"1 Midland Road","town_or_city":"London","state_or_province":"London","post_or_zip":"NW1 1AT","telephone":null,"fax":null,"first_name":"Marie-Charlotte","last_name":"Domart","email":"marie-charlotte.domart [at] crick.ac.uk","country":"United Kingdom","entry":"EMPIAR-10459"}],"status":"REL","deposition_date":"2020-07-01","release_date":"2020-10-14","obsolete_date":null,"update_date":"2020-10-14","corresponding_author":{"author":{"author_orcid":"0000-0002-5703-2922","middle_name":null,"organization":"Francis Crick Institute, Electron Microscopy STP","street":"1 Midland Road","town_or_city":"London","state_or_province":"London","post_or_zip":"NW1 1AT","first_name":"Marie-Charlotte","last_name":"Domart","country":"United Kingdom"}},"authors":[{"author":{"name":"Peddie CJ","author_orcid":null}},{"author":{"name":"Domart MC","author_orcid":"0000-0002-5703-2922"}},{"author":{"name":"Collinson L","author_orcid":null}}],"cross_references":[],"biostudies_references":[{"name":"S-BSST429"}],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Yoshida N","author_orcid":"0000-0002-3925-8557"},{"name":"Domart MC","author_orcid":"0000-0002-5703-2922"},{"name":"Peddie CJ","author_orcid":null},{"name":"Yakimovich A","author_orcid":"0000-0003-2458-4904"},{"name":"Mazon-Moya MJ","author_orcid":null},{"name":"Hawkins TA","author_orcid":null},{"name":"Collinson L","author_orcid":null},{"name":"Mercer J","author_orcid":null},{"name":"Frickel EM","author_orcid":"0000-0002-9515-3442"},{"name":"Mostowy S","author_orcid":"0000-0002-7286-6503"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"The zebrafish as a novel model for the in vivo study of Toxoplasma gondii replication and interaction with macrophages","volume":"13","country":"","first_page":null,"last_page":null,"year":"2020","language":"English","doi":"10.1242/dmm.043091","pubmedid":"32461265","details":"Raw and processed data corresponding to Figure 7 in the paper","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Disease models & mechanisms","journal_abbreviation":"Dis Model Mech","issue":"7","preprint":false}],"dataset_size":"1.1 TB","experiment_type":"CLEM","scale":null,"entry_doi":"10.6019/EMPIAR-10459"}}