{"EMPIAR-10404":{"imagesets":[{"segmentations":[],"name":"12448_G1HR - TEM analysis of SARS-CoV-2 infected intestine organoids","directory":"data","category":"stitched maps","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Stitched map of TEM analysis of SARS-CoV-2 infected intestine organoids. Stitched map in OME-TIFF pyramidal format (BioFormats 6.0 or higher required for reading file).\n\nThe data can be examined in IDR:\n<a href=\"https://idr.openmicroscopy.org/search/?query=Name:idr0083\">https://idr.openmicroscopy.org/search/?query=Name:idr0083</a>\nand \n<a href=\"https://idr.openmicroscopy.org/webclient/?show=project-1051\">https://idr.openmicroscopy.org/webclient/?show=project-1051</a>\n\nDirect links to images:\n<a href=\"https://idr.openmicroscopy.org/study/idr0083/figure/4i\">https://idr.openmicroscopy.org/study/idr0083/figure/4i</a>\n<a href=\"https://idr.openmicroscopy.org/study/idr0083/figure/4r\">https://idr.openmicroscopy.org/study/idr0083/figure/4r</a>","image_width":"144384","image_height":"93184"},{"segmentations":[],"name":"12448_J1HR - TEM analysis of SARS-CoV-2 infected intestine organoids","directory":"data","category":"stitched maps","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Stitched map of TEM analysis of SARS-CoV-2 infected intestine organoids. Stitched map in OME-TIFF pyramidal format (BioFormats 6.0 or higher required for reading file).\n\nThe data can be examined in IDR:\n<a href=\"https://idr.openmicroscopy.org/search/?query=Name:idr0083\">https://idr.openmicroscopy.org/search/?query=Name:idr0083</a>\nand \n<a href=\"https://idr.openmicroscopy.org/webclient/?show=project-1051\">https://idr.openmicroscopy.org/webclient/?show=project-1051</a>\n\nDirect links to images:\n<a href=\"https://idr.openmicroscopy.org/study/idr0083/figure/4i\">https://idr.openmicroscopy.org/study/idr0083/figure/4i</a>\n<a href=\"https://idr.openmicroscopy.org/study/idr0083/figure/4r\">https://idr.openmicroscopy.org/study/idr0083/figure/4r</a>","image_width":"79360","image_height":"167424"},{"segmentations":[],"name":"12448_G1HR - Raw micrographs used to stitch 12448_G1HR_Mesh003.ome.tif","directory":"data/12448_G1HR/Mesh003","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1470,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"All raw micrographs used for stitching. Also contains the stage coordinates of each micrograph in xml and matlab format. For each file a log file is available with the settings used.","image_width":"4096","image_height":"4096"},{"segmentations":[],"name":"12448_J1HR - Raw micrographs used to stitch 12448_J1HR_Mesh001.ome.tif","directory":"data/12448_J1HR/Mesh001","category":"micrographs - single frame","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":1400,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":10.0,"pixel_height":10.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"All raw micrographs used for stitching. Also contains the stage coordinates of each micrograph in xml and matlab format. For each file a log file is available with the settings used.","image_width":"4096","image_height":"4096"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"SARS-CoV-2 productively infects human gut enterocytes","principal_investigator":[{"author_orcid":"0000-0001-6591-4637","middle_name":null,"organization":"Oncode Institute, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center","street":"Uppsalalaan 8","town_or_city":"Utrecht","state_or_province":null,"post_or_zip":"3584 CT","telephone":null,"fax":null,"first_name":"Hans","last_name":"Clevers","email":"h.clevers [at] hubrecht.eu","country":"Netherlands","entry":"EMPIAR-10404"},{"author_orcid":"0000-0001-6221-2015","middle_name":null,"organization":"Viroscience Department, Erasmus Medical Center, Rotterdam, Netherlands","street":"Dr. Molewaterplein 40","town_or_city":"Rotterdam","state_or_province":null,"post_or_zip":"3015 GD","telephone":null,"fax":null,"first_name":"Bart","last_name":"Haagmans","email":"b.haagmans [at] erasmusmc.nl","country":"Netherlands","entry":"EMPIAR-10404"}],"status":"REL","deposition_date":"2020-04-30","release_date":"2020-05-01","obsolete_date":null,"update_date":"2021-06-18","corresponding_author":{"author":{"author_orcid":"0000-0002-7539-1160","middle_name":null,"organization":"Maastricht University - M4I","street":"Universiteitssingel 50","town_or_city":"Maastricht","state_or_province":null,"post_or_zip":"6229 ER","first_name":"Kèvin","last_name":"Knoops","country":"Netherlands"}},"authors":[{"author":{"name":"Lamers MM","author_orcid":"0000-0002-1431-4022"}},{"author":{"name":"Beumer J","author_orcid":"0000-0002-2055-4444"}},{"author":{"name":"van der Vaart J","author_orcid":"0000-0002-4126-8420"}},{"author":{"name":"Knoops K","author_orcid":"0000-0002-7539-1160"}},{"author":{"name":"Puschhof J","author_orcid":null}},{"author":{"name":"Breugem T","author_orcid":null}},{"author":{"name":"Ravelli RBG","author_orcid":"0000-0001-6056-5888"}},{"author":{"name":"van Schayck JP","author_orcid":"0000-0001-6591-4637"}},{"author":{"name":"Mykytyn AZ","author_orcid":null}},{"author":{"name":"Duimel HQ","author_orcid":null}},{"author":{"name":"van Donselaar E","author_orcid":null}},{"author":{"name":"Riesebosch S","author_orcid":null}},{"author":{"name":"Kuijpers HJH","author_orcid":null}},{"author":{"name":"Schipper D","author_orcid":null}},{"author":{"name":"van de Wetering WJ","author_orcid":null}},{"author":{"name":"de Graaf M","author_orcid":null}},{"author":{"name":"Koopmans M","author_orcid":"0000-0002-5204-2312"}},{"author":{"name":"Cuppen E","author_orcid":"0000-0002-0400-9542"}},{"author":{"name":"Peters PJ","author_orcid":null}},{"author":{"name":"Haagmans B","author_orcid":"0000-0001-6221-2015"}},{"author":{"name":"Clevers H","author_orcid":"0000-0002-3077-5582"}}],"cross_references":[],"biostudies_references":[],"idr_references":[{"name":"idr0083"}],"empiar_references":[],"citation":[{"authors":[{"name":"Lamers MM","author_orcid":"0000-0002-1431-4022"},{"name":"Beumer J","author_orcid":"0000-0002-2055-4444"},{"name":"van der Vaart J","author_orcid":"0000-0002-4126-8420"},{"name":"Knoops K","author_orcid":"0000-0002-7539-1160"},{"name":"Puschhof J","author_orcid":null},{"name":"Breugem T","author_orcid":null},{"name":"Ravelli RBG","author_orcid":"0000-0001-6056-5888"},{"name":"van Schayck JP","author_orcid":"0000-0001-6591-4637"},{"name":"Mykytyn AZ","author_orcid":null},{"name":"Duimel HQ","author_orcid":null},{"name":"van Donselaar E","author_orcid":null},{"name":"Riesebosch S","author_orcid":null},{"name":"Kuijpers HJH","author_orcid":null},{"name":"Schipper D","author_orcid":null},{"name":"van de Wetering WJ","author_orcid":null},{"name":"de Graaf M","author_orcid":null},{"name":"Koopmans M","author_orcid":"0000-0002-5204-2312"},{"name":"Cuppen E","author_orcid":"0000-0002-0400-9542"},{"name":"Peters PJ","author_orcid":null},{"name":"Haagmans B","author_orcid":"0000-0001-6221-2015"},{"name":"Clevers H","author_orcid":"0000-0002-3077-5582"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"SARS-CoV-2 productively infects human gut enterocytes","volume":null,"country":"United States","first_page":null,"last_page":null,"year":null,"language":null,"doi":"10.1126/science.abc1669","pubmedid":"32358202","details":"These are the complete stitched maps in OME-TIFF pyramidal format (BioFormats 6.0 or higher required for reading files) and the raw unstitched tiffs.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Science","journal_abbreviation":"Science","issue":null,"preprint":false}],"dataset_size":"156.2 GB","experiment_type":"Exception","scale":null,"entry_doi":"10.6019/EMPIAR-10404"}}