{"EMPIAR-10389":{"imagesets":[{"segmentations":[],"name":"Aligned averages of Y. enterocolitica urease","directory":"data/alignaver","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":4313,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":0.639,"pixel_height":0.639,"micrographs_file_pattern":"data/alignaver/*.mrc","picked_particles_file_pattern":"data/alignaver/*_automatch.star","picked_particles_directory":"data/alignaver","details":"Y. enterocolitica Urease dataset\n********************************\n\nAcceleration voltage = 300 kV\nCs = 2.7 mm\nPhysical pixel size = 0.639 A/px\nTotal exposure = 42 e- / A^2 distributed over 40 frames for 8 s\nDetector = Gatan K2 with Quantum-LS energy filter (20 slit eV width)\n\nData structure:\n\nalignaver/ : This directory contains dose-weighted aligned movie averages from MotionCor2, the coordinates of the Gautomatch picked particles (STAR and BOX formats), and the meta-data for the Bayesian polishing (STAR format).\n\ngainref/ : This directory contains the gain references in DM4 and MRC formats, pixel defect lists in TXT format.\n\nraw/ : raw movies in TIFF format\n\nmicrographs_multi+single_joined.star : this file contains all the micrographs used for processing with their respective _rlnBeamTiltClass label.\n\nrun_ct14_data.star : this file contains the metadata for the particles used in the final reconstruction.\n\nNOTE: The directories contain all data from the multi- and single-shot movies together, as specified by the file name.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Raw multi-frame micrographs of Y. enterocolitica urease","directory":"data/raw","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":4314,"frames_per_image":40,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":0.639,"pixel_height":0.639,"micrographs_file_pattern":"data/raw/*.tif","picked_particles_file_pattern":"data/alignaver/*_automatch.star","picked_particles_directory":"data/alignaver","details":"Dose rate is 1.05 e-/A^2.\n\nY. enterocolitica Urease dataset\n********************************\n\nAcceleration voltage = 300 kV\nCs = 2.7 mm\nPhysical pixel size = 0.639 A/px\nTotal exposure = 42 e- / A^2 distributed over 40 frames for 8 s\nDetector = Gatan K2 with Quantum-LS energy filter (20 slit eV width)\n\nData structure:\n\nalignaver/ : This directory contains dose-weighted aligned movie averages from MotionCor2, the coordinates of the Gautomatch picked particles (STAR and BOX formats), and the meta-data for the Bayesian polishing (STAR format).\n\ngainref/ : This directory contains the gain references in DM4 and MRC formats, pixel defect lists in TXT format.\n\nraw/ : raw movies in TIFF format\n\nmicrographs_multi+single_joined.star : this file contains all the micrographs used for processing with their respective _rlnBeamTiltClass label.\n\nrun_ct14_data.star : this file contains the metadata for the particles used in the final reconstruction.\n\nNOTE: The directories contain all data from the multi- and single-shot movies together, as specified by the file name.","image_width":"3838","image_height":"3710"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"High resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica","principal_investigator":[{"author_orcid":"0000-0002-1185-4592","middle_name":null,"organization":"Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel","street":"Mattenstrasse 26","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4058","telephone":"+41 61 387 32 62","fax":"+41 61 387 32 62","first_name":"Henning","last_name":"Stahlberg","email":"henning.stahlberg [at] unibas.ch","country":"Switzerland","entry":"EMPIAR-10389"},{"author_orcid":null,"middle_name":null,"organization":"Biozentrum, University of Basel","street":"Klingelbergstrasse 50/70","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4056","telephone":"+41 61 207 21 76","fax":"+41 61 207 21 76","first_name":"Timm","last_name":"Maier","email":"timm.maier [at] unibas.ch","country":"Switzerland","entry":"EMPIAR-10389"}],"status":"REL","deposition_date":"2020-01-30","release_date":"2020-06-12","obsolete_date":null,"update_date":"2021-02-12","corresponding_author":{"author":{"author_orcid":"0000-0003-4247-4303","middle_name":null,"organization":"Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel","street":"Mattenstrasse 26","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4058","first_name":"Ricardo","last_name":"Righetto","country":"Switzerland"}},"authors":[{"author":{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"}},{"author":{"name":"Anton L","author_orcid":"0000-0003-0008-2141"}},{"author":{"name":"Adaixo R","author_orcid":null}},{"author":{"name":"Jakob RP","author_orcid":"0000-0002-6451-8656"}},{"author":{"name":"Zivanov J","author_orcid":null}},{"author":{"name":"Mahi MA","author_orcid":null}},{"author":{"name":"Ringler P","author_orcid":null}},{"author":{"name":"Schwede T","author_orcid":"0000-0003-2715-335X"}},{"author":{"name":"Maier T","author_orcid":"0000-0002-7459-1363"}},{"author":{"name":"Stahlberg H","author_orcid":"0000-0002-1185-4592"}}],"cross_references":["EMD-10835"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"},{"name":"Anton L","author_orcid":"0000-0003-0008-2141"},{"name":"Adaixo R","author_orcid":null},{"name":"Jakob RP","author_orcid":"0000-0002-6451-8656"},{"name":"Zivanov J","author_orcid":null},{"name":"Mahi MA","author_orcid":null},{"name":"Ringler P","author_orcid":null},{"name":"Schwede T","author_orcid":"0000-0003-2715-335X"},{"name":"Maier T","author_orcid":"0000-0002-7459-1363"},{"name":"Stahlberg H","author_orcid":"0000-0002-1185-4592"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica","volume":"11","country":"","first_page":null,"last_page":null,"year":"2020","language":"English","doi":"10.1038/s41467-020-18870-2","pubmedid":"33037208","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature communications","journal_abbreviation":"Nat Commun","issue":"1","preprint":false}],"dataset_size":"839.9 GB","experiment_type":"EMDB","scale":null,"related_pdb_entries":["6yl3"],"entry_doi":"10.6019/EMPIAR-10389"}}