{"EMPIAR-10347":{"imagesets":[{"segmentations":[],"name":"Dose-weighted aligned movie averages of the FAK AMP-PNP dataset","directory":"data/amp-pnp/micrographs/alignaver","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":2513,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.058,"pixel_height":1.058,"micrographs_file_pattern":"data/amp-pnp/micrographs/alignaver/*.mrc","picked_particles_file_pattern":"data/amp-pnp/micrographs/coordinates/*.box","picked_particles_directory":"data/amp-pnp/particles/","details":"The filenames contain the tilt angle estimated by FOCUS as well as their unique ID within the FOCUS project.\nMicrographs have been downsampled by a factor of two in relation to the super-resolution movies, i.e. they are at the physical pixel size.\nMore details in the data/README file.","image_width":"3838","image_height":"3710"},{"segmentations":[],"name":"Unaligned movies of the FAK AMP-PNP dataset","directory":"data/amp-pnp/micrographs/raw","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":2513,"frames_per_image":40,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":0.529,"pixel_height":0.529,"micrographs_file_pattern":"data/amp-pnp/micrographs/alignaver/*.mrc","picked_particles_file_pattern":"data/amp-pnp/micrographs/coordinates/*.box","picked_particles_directory":"data/amp-pnp/particles/","details":"Movies have been acquired in super-resolution mode of the K2 detector.\nThe gain reference and defects list file are stored under data/amp-pnp/micrographs/gainref/.\nThe filenames contain the tilt angle estimated by FOCUS as well as their unique ID within the FOCUS project.\nMore details in the data/README file.","image_width":"7676","image_height":"7420"},{"segmentations":[],"name":"Stack of particles extracted from the FAK AMP-PNP dataset","directory":"data/amp-pnp/particles","category":"picked particles - single frame - unprocessed","header_format":"MRCS","data_format":"MRCS","num_images_or_tilt_series":2666154,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":2.116,"pixel_height":2.116,"micrographs_file_pattern":"data/amp-pnp/micrographs/alignaver/*.mrc","picked_particles_file_pattern":"data/amp-pnp/micrographs/coordinates/*.box","picked_particles_directory":"data/amp-pnp/particles","details":"Particle boxes have been downsampled by a factor of two in relation to the aligned micrographs.\nThe initial orientations and defocii values are determined from the 2D crystal processing are available in the particles.star file.\nMore details in the data/README file.","image_width":"200","image_height":"200"},{"segmentations":[],"name":"Dose-weighted aligned movie averages of the FAK APO Polara dataset","directory":"data/apo/micrographs/polara/alignaver","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":88,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.7,"pixel_height":1.7,"micrographs_file_pattern":"data/apo/micrographs/polara/alignaver/*.mrc","picked_particles_file_pattern":"data/apo/micrographs/polara/coordinates/*.box","picked_particles_directory":"data/apo/particles/","details":"The filenames contain the tilt angle estimated by FOCUS as well as their unique ID within the FOCUS project.\nMore details in the data/README file.","image_width":"3808","image_height":"3808"},{"segmentations":[],"name":"Dose-weighted aligned movie averages of the FAK APO Titan dataset","directory":"data/apo/micrographs/titan/alignaver","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":509,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.058,"pixel_height":1.058,"micrographs_file_pattern":"data/apo/micrographs/titan/alignaver/*.mrc","picked_particles_file_pattern":"data/apo/micrographs/titan/coordinates/*.box","picked_particles_directory":"data/apo/particles/","details":"The filenames contain the tilt angle estimated by FOCUS as well as their unique ID within the FOCUS project.\nMore details in the data/README file.","image_width":"3808","image_height":"3808"},{"segmentations":[],"name":"Unaligned movies of the FAK APO Titan dataset","directory":"data/apo/micrographs/titan/raw","category":"micrographs - multiframe","header_format":"TIFF","data_format":"TIFF","num_images_or_tilt_series":509,"frames_per_image":80,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED BYTE","pixel_width":0.529,"pixel_height":0.529,"micrographs_file_pattern":"data/apo/micrographs/titan/alignaver/*.mrc","picked_particles_file_pattern":"data/apo/micrographs/titan/coordinates/*.box","picked_particles_directory":"data/apo/particles/","details":"Movies have been acquired in super-resolution mode of the K2 detector.\nThe gain reference and defects list file are stored under data/apo/micrographs/titan/gainref/.\nThe filenames contain the tilt angle estimated by FOCUS as well as their unique ID within the FOCUS project.\nMore details in the data/README file.","image_width":"7676","image_height":"7420"},{"segmentations":[],"name":"Stack of particles extracted from the FAK APO Titan and Polara datasets","directory":"data/apo/particles","category":"picked particles - single frame - unprocessed","header_format":"MRCS","data_format":"MRCS","num_images_or_tilt_series":361796,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":1.7,"pixel_height":1.7,"micrographs_file_pattern":"data/apo/micrographs/titan/alignaver/*.mrc","picked_particles_file_pattern":"data/apo/micrographs/titan/coordinates/*.box","picked_particles_directory":"data/apo/particles/","details":"Particle boxes extracted from the Titan dataset have been downsampled to approximately match the pixel size of the Polara dataset. The stack contains all particles extracted from the FAK APO Titan and Polara datasets merged.\nThe initial orientations and defocii values are determined from the 2D crystal processing are available in the particles_preprocessed.star file.\nMore details in the data/README file.","image_width":"238","image_height":"238"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"FAK structure from single particle analysis of 2D crystals","principal_investigator":[{"author_orcid":"0000-0002-6133-6486","middle_name":null,"organization":"Structural and Chemical Biology, Biological Research Center (CIB-CSIC)","street":null,"town_or_city":"Madrid","state_or_province":null,"post_or_zip":"28040","telephone":null,"fax":null,"first_name":"Daniel","last_name":"Lietha","email":"daniel.lietha [at] cib.csic.es","country":"Spain","entry":"EMPIAR-10347"},{"author_orcid":"0000-0002-1185-4592","middle_name":null,"organization":"Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel","street":"Mattenstrasse 26","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4058","telephone":null,"fax":null,"first_name":"Henning","last_name":"Stahlberg","email":"henning.stahlberg [at] unibas.ch","country":"Switzerland","entry":"EMPIAR-10347"}],"status":"REL","deposition_date":"2020-01-16","release_date":"2020-08-25","obsolete_date":null,"update_date":"2020-08-25","corresponding_author":{"author":{"author_orcid":"0000-0003-4247-4303","middle_name":null,"organization":"Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel","street":"Mattenstrasse 26","town_or_city":"Basel","state_or_province":null,"post_or_zip":"4058","first_name":"Ricardo","last_name":"Righetto","country":"Switzerland"}},"authors":[{"author":{"name":"Acebron I","author_orcid":"0000-0003-0397-1550"}},{"author":{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"}},{"author":{"name":"Biyani N","author_orcid":"0000-0002-5405-7112"}},{"author":{"name":"Chami M","author_orcid":"0000-0002-8733-055X"}},{"author":{"name":"Boskovic J","author_orcid":"0000-0001-6135-0686"}},{"author":{"name":"Stahlberg H","author_orcid":"0000-0002-1185-4592"}},{"author":{"name":"Lietha D","author_orcid":"0000-0002-6133-6486"}}],"cross_references":["EMD-10616","EMD-10615"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Acebrón I","author_orcid":"0000-0003-0397-1550"},{"name":"Righetto RD","author_orcid":"0000-0003-4247-4303"},{"name":"Schoenherr C","author_orcid":null},{"name":"de Buhr S","author_orcid":null},{"name":"Redondo P","author_orcid":null},{"name":"Culley J","author_orcid":null},{"name":"Rodríguez CF","author_orcid":"0000-0001-9166-0132"},{"name":"Daday C","author_orcid":null},{"name":"Biyani N","author_orcid":"0000-0002-5405-7112"},{"name":"Llorca O","author_orcid":"0000-0001-5705-0699"},{"name":"Byron A","author_orcid":"0000-0002-5939-9883"},{"name":"Chami M","author_orcid":"0000-0002-8733-055X"},{"name":"Gräter F","author_orcid":null},{"name":"Boskovic J","author_orcid":"0000-0001-6135-0686"},{"name":"Frame MC","author_orcid":"0000-0001-5882-1942"},{"name":"Stahlberg H","author_orcid":"0000-0002-1185-4592"},{"name":"Lietha D","author_orcid":"0000-0002-6133-6486"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Structural basis of Focal Adhesion Kinase activation on lipid membranes","volume":null,"country":"","first_page":null,"last_page":null,"year":"2020","language":"English","doi":"10.15252/embj.2020104743","pubmedid":"32779739","details":null,"book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"The EMBO journal","journal_abbreviation":"EMBO J.","issue":null,"preprint":false}],"dataset_size":"1.8 TB","experiment_type":"EMDB","scale":null,"related_pdb_entries":["6ty4","6ty3"],"entry_doi":"10.6019/EMPIAR-10347"}}