{"EMPIAR-10215":{"imagesets":[{"segmentations":[],"name":"Micrographs along with all other magnification images from the collection","directory":"data/leginon","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":1061,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":0.832,"pixel_height":0.832,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"Frame aligned with MotionCor2.","image_width":"3710","image_height":"3838"},{"segmentations":[],"name":"Micrograph frames","directory":"data/frames","category":"micrographs - multiframe","header_format":"MRCS","data_format":"MRC","num_images_or_tilt_series":1061,"frames_per_image":30,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":0.416,"pixel_height":0.416,"micrographs_file_pattern":"data/frames/rawdata/*.mrc.*","picked_particles_file_pattern":"data/particle picks/","picked_particles_directory":"data/particle picks/","details":"Super-res frames and references. Includes picks for Topaz and Topaz-published.","image_width":"7420","image_height":"7676"},{"segmentations":[],"name":"CryoEM structures in the paper","directory":"data/all_structures_in_paper","category":"picked particles - single frame - unprocessed","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":9,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":"data/all_particle_stacks_in_paper","picked_particles_file_pattern":"data/all_particle_stacks_in_paper/","picked_particles_directory":"data/all_particle_stacks_in_paper/","details":"All structures for EMPIAR-10025, EMPIAR-10028, NYSBC-aldo with Topaz, published, and Topaz-published picks as described in the manuscript titled: Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs\n\nIncludes most Topaz particle picks and stacks for EMPIAR-10025, EMPIAR-10028, NYSBC-aldo with Topaz, published, and Topaz-published picks as described in the manuscript titled: Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs","image_width":null,"image_height":null}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Rabbit muscle aldolase single particle cryoEM","principal_investigator":[{"author_orcid":null,"middle_name":null,"organization":"Computational and Systems Biology, Massachusetts Institute of Technology","street":"32 Vassar St","town_or_city":"Cambridge","state_or_province":"Massachusetts","post_or_zip":"02139","telephone":null,"fax":null,"first_name":"Bepler","last_name":"Tristan","email":"tbepler [at] mit.edu","country":"United States","entry":"EMPIAR-10215"}],"status":"REL","deposition_date":"2018-10-03","release_date":"2019-04-05","obsolete_date":null,"update_date":"2020-02-24","corresponding_author":{"author":{"author_orcid":"0000-0001-8634-2279","middle_name":null,"organization":"New York Structural Biology Center","street":"89 Convent Avenue","town_or_city":"New York","state_or_province":"NY","post_or_zip":"10027","first_name":"Alex","last_name":"Noble","country":"United States"}},"authors":[{"author":{"name":"Bepler T","author_orcid":null}},{"author":{"name":"Morin A","author_orcid":null}},{"author":{"name":"Rapp M","author_orcid":null}},{"author":{"name":"Brasch J","author_orcid":null}},{"author":{"name":"Shapiro L","author_orcid":"0000-0001-9943-8819"}},{"author":{"name":"Noble AJ","author_orcid":"0000-0001-8634-2279"}},{"author":{"name":"Berger B","author_orcid":"0000-0002-2724-7228"}}],"cross_references":["EMD-20531","EMD-20529","EMD-20532"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Bepler T","author_orcid":null},{"name":"Morin A","author_orcid":null},{"name":"Rapp M","author_orcid":null},{"name":"Brasch J","author_orcid":null},{"name":"Shapiro L","author_orcid":"0000-0001-9943-8819"},{"name":"Noble AJ","author_orcid":"0000-0001-8634-2279"},{"name":"Berger B","author_orcid":"0000-0002-2724-7228"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs","volume":"16","country":"","first_page":"1153","last_page":"1160","year":"2019","language":"English","doi":"10.1038/s41592-019-0575-8","pubmedid":"31591578","details":"Raw frames, micrographs aligned with MotionCor2, particle picks, and particle stacks are included.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature methods","journal_abbreviation":"Nat. Methods","issue":"11","preprint":false}],"dataset_size":"1.4 TB","experiment_type":"EMDB","scale":null,"entry_doi":"10.6019/EMPIAR-10215"}}