{"EMPIAR-10169":{"imagesets":[{"segmentations":[],"name":"K2 tilt-series frames","directory":"data/frames","category":"micrographs - multiframe","header_format":"MRCS","data_format":"MRC","num_images_or_tilt_series":15,"frames_per_image":6,"frame_range_min":null,"frame_range_max":null,"voxel_type":"UNSIGNED 16 BIT INTEGER","pixel_width":2.16423,"pixel_height":2.16423,"micrographs_file_pattern":null,"picked_particles_file_pattern":null,"picked_particles_directory":null,"details":"~8 e-/px/s dose rate on the camera\nGain and dark references included\nIncludes tilt-series from the same session (apoferritin at 400ms spot-to-plunge time and insulin-bound insulin receptor at 600ms spot-to-plunge time)","image_width":"3710","image_height":"3838"},{"segmentations":[],"name":"Whole-frame aligned tilt images along with all other magnification images from the collection","directory":"data/leginon","category":"micrographs - single frame","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":15,"frames_per_image":6,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":2.16423,"pixel_height":2.16423,"micrographs_file_pattern":null,"picked_particles_file_pattern":null,"picked_particles_directory":null,"details":"Whole-frame aligned tilt images using Motioncor2.\nIncludes tilt-series from the same session (apoferritin at 400ms spot-to-plunge time and insulin-bound insulin receptor at 600ms spot-to-plunge time).","image_width":"3710","image_height":"3838"},{"segmentations":[],"name":"Manual particle picking in Dynamo","directory":"data/manual_particle_picking","category":"Other","header_format":"Other","data_format":"Other","num_images_or_tilt_series":1,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":null,"pixel_height":null,"micrographs_file_pattern":null,"picked_particles_file_pattern":null,"picked_particles_directory":null,"details":"Binned by 4 manual particle picking of the series0001 tomogram using Dynamo. Manual picking was performed to accurately distinguish between particles adsorbed to the air-water interfaces, non-adsorbed particles, and particles over or adsorbed to carbon.","image_width":null,"image_height":null},{"segmentations":[],"name":"Appion-Protomo tilt-series alignments","directory":"data/protomo_alignments","category":"tilt series","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":6,"frames_per_image":6,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":2.16423,"pixel_height":2.16423,"micrographs_file_pattern":null,"picked_particles_file_pattern":null,"picked_particles_directory":null,"details":"Includes a full tilt-series alignment run for all 100ms spot-to-plunge time apoferritin tilt-series.\nTo view properly, navigate to the protomo_alignments folder in Appion-Protomo.\nThe export/ directory contains SerialEM-formatted unaligned tilt-series stacks, mdoc files, and tilt files. This allows for easy upload to Appion-Protomo.","image_width":"3710","image_height":"3838"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"CryoET of apoferritin single particle with spot-to-plunge time of 100ms","principal_investigator":[{"author_orcid":"0000-0002-0624-5020","middle_name":null,"organization":"New York Structural Biology Center","street":"89 Convent Avenue","town_or_city":"New York","state_or_province":"NY","post_or_zip":"10027","telephone":"+1 212 939 0660","fax":null,"first_name":"Bridget","last_name":"Carragher","email":"bcarr [at] nysbc.org","country":"United States","entry":"EMPIAR-10169"}],"status":"REL","deposition_date":"2018-03-23","release_date":"2018-04-05","obsolete_date":null,"update_date":"2018-04-05","corresponding_author":{"author":{"author_orcid":"0000-0002-0624-5020","middle_name":null,"organization":"New York Structural Biology Center","street":"89 Convent Avenue","town_or_city":"New York","state_or_province":"NY","post_or_zip":"10027","first_name":"Bridget","last_name":"Carragher","country":"United States"}},"authors":[{"author":{"name":"Noble AJ","author_orcid":"0000-0001-8634-2279"}},{"author":{"name":"Wei H","author_orcid":null}},{"author":{"name":"Dandey VP","author_orcid":null}},{"author":{"name":"Zhang Z","author_orcid":null}},{"author":{"name":"Potter CS","author_orcid":null}},{"author":{"name":"Carragher B","author_orcid":"0000-0002-0624-5020"}}],"cross_references":["EMD-7623"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Noble AJ","author_orcid":"0000-0001-8634-2279"},{"name":"Wei H","author_orcid":null},{"name":"Dandey VP","author_orcid":null},{"name":"Zhang Z","author_orcid":null},{"name":"Potter CS","author_orcid":null},{"name":"Carragher B","author_orcid":"0000-0002-0624-5020"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Reducing effects of particle adsorption to the air-water interface in cryoEM","volume":null,"country":"","first_page":null,"last_page":null,"year":null,"language":"English","doi":"10.1101/288340","pubmedid":null,"details":"The tilt images are whole-frame aligned averages using Motioncor2.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"BioRxiv","journal_abbreviation":"","issue":null,"preprint":true}],"dataset_size":"119.3 GB","experiment_type":"EMDB","scale":null,"entry_doi":"10.6019/EMPIAR-10169"}}