{"EMPIAR-10164":{"imagesets":[{"segmentations":[],"name":"Compressed, unaligned, multi-frame micrographs of tilt series containing HIV-1 dMACANC virus like particles assembled in the presence of BVM. ","directory":"data/frames","category":"micrographs - multiframe","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":43,"frames_per_image":8,"frame_range_min":null,"frame_range_max":null,"voxel_type":"SIGNED BYTE","pixel_width":1.35,"pixel_height":1.35,"micrographs_file_pattern":null,"picked_particles_file_pattern":null,"picked_particles_directory":null,"details":"Information on all tilt series in corresponding .mrc.mdoc files (note that mdoc files refer to binned output, while raw frames are unbinned). \nDose per tilt series\nTS_01 to TS_16: 3.0 e/A2/sec \nTS_17 to TS_40: 3.5 e/A2/sec \nTS_41 to TS_50: 3.1 e/A2/sec \nTS_51 to TS_63: 3.0 e/A2/sec \n\nThe frames are compressed, without any alignment, and gain corrected.\n\nThe subset of data (5 tomograms) that was used for testing in Turonova et al, J Struct Biol. 2017 Sep;199(3):187-195. doi: 10.1016/j.jsb.2017.07.007 is\nTS_01\nTS_03\nTS_43\nTS_45\nTS_54\n\nPart of the dataset is 8 frames per image, part of the dataset is 10 frames per image. All frames were used.","image_width":"7420","image_height":"7676"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Cryo-electron tomography of immature HIV-1 dMACANC VLPs","principal_investigator":[{"author_orcid":"0000-0003-3990-6910","middle_name":"AG","organization":"MRC Laboratory of Molecular Biology","street":"Francis Crick Avenue, Cambridge Biomedical Campus","town_or_city":"Cambridge","state_or_province":"Cambridgeshire","post_or_zip":"CB2 0QH","telephone":null,"fax":null,"first_name":"John","last_name":"Briggs","email":"jbriggs [at] mrc-lmb.cam.ac.uk","country":"United Kingdom","entry":"EMPIAR-10164"}],"status":"REL","deposition_date":"2018-02-19","release_date":"2018-03-21","obsolete_date":null,"update_date":"2022-07-14","corresponding_author":{"author":{"author_orcid":"0000-0003-4790-8078","middle_name":null,"organization":"Institute of Science and Technology Austria","street":"Am Campus 1","town_or_city":"Klosterneuburg","state_or_province":"Lower Austria","post_or_zip":"3400","first_name":"Florian","last_name":"Schur","country":"Austria"}},"authors":[{"author":{"name":"Schur FK","author_orcid":"0000-0003-4790-8078"}},{"author":{"name":"Obr M","author_orcid":null}},{"author":{"name":"Hagen WJ","author_orcid":"0000-0001-6229-2692"}},{"author":{"name":"Wan W","author_orcid":"0000-0003-2497-3010"}},{"author":{"name":"Jakobi AJ","author_orcid":"0000-0002-7761-2027"}},{"author":{"name":"Kirkpatrick JM","author_orcid":null}},{"author":{"name":"Sachse C","author_orcid":"0000-0002-1168-5143"}},{"author":{"name":"Krausslich HG","author_orcid":null}},{"author":{"name":"Briggs JA","author_orcid":"0000-0003-3990-6910"}},{"author":{"name":"Turoňová B","author_orcid":"0000-0002-5457-4478"}}],"cross_references":["EMD-3782","EMD-4015"],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Schur FK","author_orcid":"0000-0003-4790-8078"},{"name":"Obr M","author_orcid":null},{"name":"Hagen WJ","author_orcid":"0000-0001-6229-2692"},{"name":"Wan W","author_orcid":"0000-0003-2497-3010"},{"name":"Jakobi AJ","author_orcid":"0000-0002-7761-2027"},{"name":"Kirkpatrick JM","author_orcid":null},{"name":"Sachse C","author_orcid":"0000-0002-1168-5143"},{"name":"Kräusslich HG","author_orcid":null},{"name":"Briggs JA","author_orcid":"0000-0003-3990-6910"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation","volume":"353","country":"","first_page":"506","last_page":"508","year":"2016","language":"English","doi":"10.1126/science.aaf9620","pubmedid":"27417497","details":"The data is deposited as raw, compressed frames (8-10 frames). Additional information for each tilt-series can be found in the respective mrc.mdoc files.\n\nThe subset of data (five tilt series) used for testing in Turonova et al, J Struct Biol. 2017 Sep;199(3):187-195. doi: 10.1016/j.jsb.2017.07.007 are TS_01,TS_03, TS_43, TS_45, TS_54\n","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Science (New York, N.Y.)","journal_abbreviation":"Science","issue":"6298","preprint":false},{"authors":[{"name":"Turoňová B","author_orcid":"0000-0002-5457-4478"},{"name":"Schur FKM","author_orcid":"0000-0003-4790-8078"},{"name":"Wan W","author_orcid":"0000-0003-2497-3010"},{"name":"Briggs JAG","author_orcid":"0000-0003-3990-6910"}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å","volume":"199","country":"","first_page":"187","last_page":"195","year":"2017","language":"English","doi":"10.1016/j.jsb.2017.07.007","pubmedid":"28743638","details":"The data is deposited as raw, compressed frames (8-10 frames). Additional information for each tilt-series can be found in the respective mrc.mdoc files.\n\nThe subset of data (five tilt series) used for testing in Turonova et al, J Struct Biol. 2017 Sep;199(3):187-195. doi: 10.1016/j.jsb.2017.07.007 are TS_01,TS_03, TS_43, TS_45, TS_54","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Journal of structural biology","journal_abbreviation":"J. Struct. Biol.","issue":"3","preprint":false}],"dataset_size":"865.0 GB","experiment_type":"EMDB","scale":null,"related_pdb_entries":["5l93"],"entry_doi":"10.6019/EMPIAR-10164"}}