{"EMPIAR-10070":{"imagesets":[{"segmentations":[],"name":"aligned stack: FIB-SEM volume through skeletal muscle tissue","directory":"data","category":"reconstructed volumes","header_format":"MRC","data_format":"MRC","num_images_or_tilt_series":291,"frames_per_image":1,"frame_range_min":null,"frame_range_max":null,"voxel_type":"32 BIT FLOAT","pixel_width":50.0,"pixel_height":50.0,"micrographs_file_pattern":"","picked_particles_file_pattern":"","picked_particles_directory":"","details":"MRC is of an aligned stack of tiffs that are binned by 3 in x and y. Z thickness is ~15 nm.\n\nVolume rendered components found in Figures 1 (paravascular region in murine skeletal muscle) and Figure 2 (skeletal muscle mitochondria morphologies, nucleus, and blood vessel), Glancy et al: http://www.nature.com/nature/journal/v523/n7562/pdf/nature14614.pdf are located in respective Figure folders. Software used for rendering/segmentation: ImageJ/TRAKEM2 plugin.","image_width":"1675","image_height":"1595"}],"workflow_file":null,"grant_references":[],"version_history":[],"title":"Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle","principal_investigator":[{"author_orcid":null,"middle_name":null,"organization":"National Institutes of Health, NCI, Center for Cancer Research, Laboratory of Cell Biology","street":null,"town_or_city":"Bethesda","state_or_province":null,"post_or_zip":"20892","telephone":null,"fax":null,"first_name":"Sriram","last_name":"Subramaniam","email":"subramas [at] mail.nih.gov","country":"United States","entry":"EMPIAR-10070"},{"author_orcid":null,"middle_name":null,"organization":"National Institutes of Health, NHLBI","street":null,"town_or_city":"Bethesda","state_or_province":null,"post_or_zip":"20892","telephone":null,"fax":null,"first_name":"Robert","last_name":"Balaban","email":"balabanr [at] nhlbi.nih.gov","country":"United States","entry":"EMPIAR-10070"}],"status":"REL","deposition_date":"2016-11-16","release_date":"2016-11-18","obsolete_date":null,"update_date":"2023-07-07","corresponding_author":{"author":{"author_orcid":null,"middle_name":null,"organization":"National Cancer Institute","street":null,"town_or_city":"Bethesda","state_or_province":null,"post_or_zip":"20892","first_name":"Sriram","last_name":"Subramaniam","country":"United States"}},"authors":[{"author":{"name":"Glancy B","author_orcid":null}},{"author":{"name":"Hartnell LM","author_orcid":null}},{"author":{"name":"Malide D","author_orcid":null}},{"author":{"name":"Yu ZX","author_orcid":null}},{"author":{"name":"Combs CA","author_orcid":null}},{"author":{"name":"Connelly PS","author_orcid":null}},{"author":{"name":"Subramaniam S","author_orcid":null}},{"author":{"name":"Balaban RS","author_orcid":null}}],"cross_references":[],"biostudies_references":[],"idr_references":[],"empiar_references":[],"citation":[{"authors":[{"name":"Glancy B","author_orcid":null},{"name":"Hartnell LM","author_orcid":null},{"name":"Malide D","author_orcid":null},{"name":"Yu ZX","author_orcid":null},{"name":"Combs CA","author_orcid":null},{"name":"Connelly PS","author_orcid":null},{"name":"Subramaniam S","author_orcid":null},{"name":"Balaban RS","author_orcid":null}],"editors":[],"published":true,"j_or_nj_citation":true,"title":"Mitochondrial reticulum for cellular energy distribution in muscle","volume":"523","country":"","first_page":"617","last_page":"620","year":"2015","language":"English","doi":"10.1038/nature14614","pubmedid":"26223627","details":"The included aligned mrc was used to provide the measured dimensions of individual mitochondria. This is a representative demonstration of the distribution of the mitochondrial reticulum through a paravascular region of murine skeletal muscle.","book_chapter_title":null,"publisher":null,"publication_location":null,"journal":"Nature","journal_abbreviation":"Nature","issue":"7562","preprint":false}],"dataset_size":"1.5 GB","experiment_type":"FIB-SEM","scale":"cell","entry_doi":"10.6019/EMPIAR-10070"}}