Electron Microscopy Data Bank

EMD-31940

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Core region of nuclear ring asymmetric unit of Xenopus laevis nuclear pore complex

Release date: July 13, 2022
Resolution: 6.8 Å
EM Method: Single-particle

Tai L, Zhu Y, Sun F

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-31941

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Unknown density region of nuclear ring of Xenopus laevis nuclear pore complex

Release date: July 13, 2022
Resolution: 10.6 Å
EM Method: Single-particle

Tai L, Zhu Y, Sun F

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-31942

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Cytoplasmic ring asymmetric unit of Xenopus laevis nuclear pore complex

Release date: July 13, 2022
Resolution: 7.6 Å
EM Method: Single-particle

Tai L, Zhu Y, Sun F

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-31943

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Inner ring asymmetric unit of Xenopus laevis nuclear pore complex

Release date: July 13, 2022
Resolution: 9.8 Å
EM Method: Single-particle

Tai L, Zhu Y, Sun F

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-25818

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CryoEM map of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis

Release date: June 29, 2022
Resolution: 6.9 Å
EM Method: Single-particle

Fontana P, Wu H

Science (2022) 376 pp. eabm9326- [ ]

Sample:

Cytoplasmic ring of nuclear pore complex (Complex from Xenopus laevis)

EMD-31601

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The cryo-EM map of the Nup358 region from the X. laevis NPC CR subunit

Release date: June 29, 2022
Resolution: 4.9 Å
EM Method: Single-particle

Zhu X, Huang G, Zeng C, Zhan X, Liang K, Xu Q, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y

Science (2022) 376 pp. eabl8280-eabl8280 [ DOI: doi:10.1126/science.abl8280 Pubmed: 35679404 ]

Sample:

Structure of the npc cytoplasmic ring (Complex from Xenopus laevis)

EMD-14322

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Human nuclear pore complex (constricted)

Release date: June 22, 2022
Resolution: 12.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7r5k

Mosalaganti S, Obarska-Kosinska A, Siggel M, Taniguchi R, Turonova B, Zimmerli CE, Buczak K, Schmidt FH, Margiotta E, Mackmull MT, Hagen WJH, Hummer G, Kosinski J, Beck M

Science (2022) 376 pp. eabm9506-eabm9506 [ DOI: doi:10.1126/science.abm9506 Pubmed: 35679397 ]

Sample:

Nucleoporin nup37 (36 kDa, Protein from human)
Nuclear pore complex protein nup107 (106 kDa, Protein from human)
Nuclear pore complex protein nup98 (91 kDa, Protein from human)
Nuclear pore complex protein nup155 (155 kDa, Protein from human)
Nuclear pore complex protein nup88 (83 kDa, Protein from human)
Nuclear pore complex protein nup93 (93 kDa, Protein from human)
Nucleoporin seh1 (39 kDa, Protein from human)
Nuclear pore complex protein nup214 (213 kDa, Protein from human)
Nuclear pore glycoprotein p62 (53 kDa, Protein from human)
Nuclear pore complex (120 MDa, Cellular component from Homo sapiens)
Aladin (59 kDa, Protein from human)
Protein elys (252 kDa, Protein from human)
Nuclear pore complex protein nup205 (228 kDa, Protein from human)
Nucleoporin ndc1 (76 kDa, Protein from human)
Nucleoporin nup188 homolog (196 kDa, Protein from human)
Nucleoporin nup43 (42 kDa, Protein from human)
Nucleoporin nup35 (34 kDa, Protein from human)
E3 sumo-protein ligase ranbp2 (358 kDa, Protein from human)
Nuclear pore complex protein nup160 (162 kDa, Protein from human)
Nucleoporin p58/p45 (60 kDa, Protein from human)
Nucleoporin p54 (55 kDa, Protein from human)
Protein sec13 homolog (35 kDa, Protein from human)
Nuclear pore complex protein nup133 (129 kDa, Protein from human)
Nuclear pore complex protein nup85 (75 kDa, Protein from human)
Nuclear pore complex protein nup96 (106 kDa, Protein from human)
Nuclear pore membrane glycoprotein 210 (205 kDa, Protein from human)

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EMD-25817

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Cryo-EM map of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis

Release date: June 22, 2022
Resolution: 6.9 Å
EM Method: Single-particle

Fontana P, Dong Y, Pi X, Tong AB, Hecksel CW, Wang L, Fu TM, Bustamante C, Wu H

Science (2022) 376 pp. eabm9326-eabm9326 [ DOI: doi:10.1126/science.abm9326 Pubmed: 35679401 ]

Sample:

Cytoplasmic ring of nuclear pore complex (Complex from Xenopus laevis)

EMD-24056

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Single particle cryo-EM structure of the Chaetomium thermophilum Nup192-Nic96 complex (Nup192 residues 1-1756; Nic96 residues 240-301)

Release date: June 15, 2022
Resolution: 3.77 Å
EM Method: Single-particle
Fitted PDBs: 7mvu

Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

Science (2022) 376 pp. eabm9798-eabm9798 [ Pubmed: 35679425 DOI: doi:10.1126/science.abm9798 ]

Sample:

Nucleoporin nup192 (200 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Nup192-nic96 heterodimer (204 kDa, Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
Nucleoporin nic96 (7 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))

EMD-24057

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Single particle cryo-EM structure of the Chaetomium thermophilum Nup192-Nic96-Nup53-Nup145N complex (Nup192 residues 1-1756; Nic96 residues 240-301; Nup53 31-67; Nup145N 616-683)

Release date: June 15, 2022
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 7mvv

Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

Science (2022) 376 pp. eabm9798-eabm9798 [ Pubmed: 35679425 DOI: doi:10.1126/science.abm9798 ]

Sample:

Nup192-nic96-nup53-nup145n heterotetramer (215 kDa, Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
Nucleoporin nup145n (7 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Nucleoporin nup192 (200 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Nucleoporin nup53 (4 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Nucleoporin nic96 (7 kDa, Protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))

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