Electron Microscopy Data Bank

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Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7208 and BA7125 fab

Release date: March 15, 2023
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7xdl
Q-score: 0.5

Wang Y, Yan A, Song D, Dong C, Rao M, Gao Y, Qi R, Ma X, Wang Q, Xu H, Liu H, Han J, Duan M, Liu S, Yu X, Zong M, Feng J, Jiao J, Zhang H, Li M, Yu B, Wang Y, Meng F, Ni X, Li Y, Shen Z, Sun B, Shao X, Zhao H, Zhao Y, Li R, Zhang Y, Du G, Lu J, You C, Jiang H, Zhang L, Wang L, Dou C, Liu Z, Zhao J

Cell Discov (2023) 9 pp. 3-3 [ Pubmed: 36609558 DOI: doi:10.1038/s41421-022-00509-9 ]

EMD-33130

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Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with BA7054 and BA7125 fab (local refinement)

Release date: March 1, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xcz
Q-score: 0.528

Wang Y, Yan A, Song D, Dong C, Rao M, Gao Y, Qi R, Ma X, Wang Q, Xu H, Liu H, Han J, Duan M, Liu S, Yu X, Zong M, Feng J, Jiao J, Zhang H, Li M, Yu B, Wang Y, Meng F, Ni X, Li Y, Shen Z, Sun B, Shao X, Zhao H, Zhao Y, Li R, Zhang Y, Du G, Lu J, You C, Jiang H, Zhang L, Wang L, Dou C, Liu Z, Zhao J

Cell Discov (2023) 9 pp. 3-3 [ DOI: doi:10.1038/s41421-022-00509-9 Pubmed: 36609558 ]

EMD-33140

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Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with BA7208 and BA7125 fab (local refinement)

Release date: March 1, 2023
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7xda
Q-score: 0.526

Wang Y, Yan A, Song D, Dong C, Rao M, Gao Y, Qi R, Ma X, Wang Q, Xu H, Liu H, Han J, Duan M, Liu S, Yu X, Zong M, Feng J, Jiao J, Zhang H, Li M, Yu B, Wang Y, Meng F, Ni X, Li Y, Shen Z, Sun B, Shao X, Zhao H, Zhao Y, Li R, Zhang Y, Du G, Lu J, You C, Jiang H, Zhang L, Wang L, Dou C, Liu Z, Zhao J

Cell Discov (2023) 9 pp. 3-3 [ DOI: doi:10.1038/s41421-022-00509-9 Pubmed: 36609558 ]

EMD-33142

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Cryo-EM structure of SARS-CoV-2 Omicron Spike protein in complex with BA7208 fab

Release date: March 1, 2023
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 7xdb
Q-score: 0.502

Wang Y, Yan A, Song D, Dong C, Rao M, Gao Y, Qi R, Ma X, Wang Q, Xu H, Liu H, Han J, Duan M, Liu S, Yu X, Zong M, Feng J, Jiao J, Zhang H, Li M, Yu B, Wang Y, Meng F, Ni X, Li Y, Shen Z, Sun B, Shao X, Zhao H, Zhao Y, Li R, Zhang Y, Du G, Lu J, You C, Jiang H, Zhang L, Wang L, Dou C, Liu Z, Zhao J

Cell Discov (2023) 9 pp. 3-3 [ DOI: doi:10.1038/s41421-022-00509-9 Pubmed: 36609558 ]

EMD-33150

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Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7054 and BA7125 fab

Release date: March 1, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xdk
Q-score: 0.496

Wang Y, Yan A, Song D, Dong C, Rao M, Gao Y, Qi R, Ma X, Wang Q, Xu H, Liu H, Han J, Duan M, Liu S, Yu X, Zong M, Feng J, Jiao J, Zhang H, Li M, Yu B, Wang Y, Meng F, Ni X, Li Y, Shen Z, Sun B, Shao X, Zhao H, Zhao Y, Li R, Zhang Y, Du G, Lu J, You C, Jiang H, Zhang L, Wang L, Dou C, Liu Z, Zhao J

Cell Discov (2023) 9 pp. 3-3 [ DOI: doi:10.1038/s41421-022-00509-9 Pubmed: 36609558 ]

EMD-32264

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Deactive state CI from Rotenone-NADH dataset, Subclass 2

Release date: Feb. 1, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7w2l
Q-score: 0.57

Gu J, Liu T, Guo R, Zhang L, Yang M

Nat Struct Mol Biol (2022) 29 pp. 172-182 [ Pubmed: 35145322 DOI: doi:10.1038/s41594-022-00722-w ]

EMD-32265

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Active state CI from DQ-NADH dataset, Subclass 1

Release date: Feb. 1, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7w2r
Q-score: 0.597

Gu J, Liu T, Guo R, Zhang L, Yang M

Nat Struct Mol Biol (2022) 29 pp. 172-182 [ Pubmed: 35145322 DOI: doi:10.1038/s41594-022-00722-w ]

EMD-32266

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Active state CI from DQ-NADH dataset, Subclass 2

Release date: Feb. 1, 2023
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7w2u
Q-score: 0.638

Gu J, Liu T, Guo R, Zhang L, Yang M

Nat Struct Mol Biol (2022) 29 pp. 172-182 [ Pubmed: 35145322 DOI: doi:10.1038/s41594-022-00722-w ]

EMD-32267

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Active state CI from DQ-NADH dataset, Subclass 3

Release date: Feb. 1, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7w2y
Q-score: 0.626

Gu J, Liu T, Guo R, Zhang L, Yang M

Nat Struct Mol Biol (2022) 29 pp. 172-182 [ Pubmed: 35145322 DOI: doi:10.1038/s41594-022-00722-w ]

EMD-32269

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Deactive state CI from DQ-NADH dataset, Subclass 1

Release date: Feb. 1, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7w31
Q-score: 0.509

Gu J, Liu T, Guo R, Zhang L, Yang M

Nat Struct Mol Biol (2022) 29 pp. 172-182 [ Pubmed: 35145322 DOI: doi:10.1038/s41594-022-00722-w ]

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