Electron Microscopy Data Bank

Edit your search query here and hit Return to execute it:

sample_name:"Nucleosome"

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Current Database

Current status

Sample type

Organism

Homo sapiens [861]
Synthetic construct [484]
Xenopus laevis [417]
Saccharomyces cerevisiae [102]
Saccharomyces cerevisiae [63]
Mus musculus [61]
Sus scrofa [49]
Escherichia coli [34]
Arabidopsis thaliana [30]
Drosophila melanogaster [29]
Komagataella phaffii [22]
Unidentified adenovirus [19]
Komagataella phaffii [17]
Escherichia coli [14]
Xenopus borealis [12]
Gallus gallus [11]
Komagataella phaffii [7]
Schizosaccharomyces pombe [5]
Chaetomium thermophilum [5]
Xenopus calcaratus [4]
Komagataella pastoris [4]
(no species) [4]
(no species) [4]
Escherichia coli [4]
Escherichia coli [4]
Trypanosoma brucei [3]
Chaetomium thermophilum [3]
Kluyveromyces lactis [3]
Melbournevirus [2]
Homo sapiens environmental sample [2]
(no species) [2]
Xenopus laevis [2]
(no species) [2]
(no species) [2]
Marseillevirus marseillevirus [2]
Xenopus tropicalis [2]
Ramazzottius varieornatus [2]
Rattus norvegicus [1]
Human immunodeficiency virus 1 [1]
Simian foamy virus [1]
Streptococcus pyogenes [1]
Pyrobaculum filamentous virus 1 [1]
Saccharomyces killer virus m2-4 [1]
Synthetic rna [1]
(no species) [1]
Ectocarpus siliculosus [1]
Medusavirus medusae [1]
Escherichia coli [1]
Schizosaccharomyces pombe [1]
Candida norvegensis [1]
Giardia intestinalis [1]
Saccharomyces cerevisiae [1]
Linanthus concinnus [1]
Trichoplusia ni [1]
(no species) [1]
Petromyzon marinus [1]
Xenopus lenduensis [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Kurumizaka H [122]
Cramer P [94]
Takizawa Y [77]
Dienemann C [76]
Halic M [74]
Bilokapic S [60]
Kujirai T [59]
Farnung L [54]
Ehara H [53]
Sekine SI [53]
Armache JP [46]
Weaver TM [46]
Chen Z [45]
Cavadini S [44]
Thoma NH [44]
Engeholm M [43]
Arimura Y [38]
Bai Y [37]
Kempf G [37]
Sekine S [36]
Chen K [35]
Shirouzu M [35]
Freudenthal BD [34]
Kater L [34]
Wang H [34]
Wu C [34]
Zhang Y [34]
Zhou BR [34]
Liu M [32]
Louder RK [32]
Park G [32]
Zhou XE [32]
Abril-garrido J [31]
Armache J-P [31]
Armache KJ [31]
Funabiki H [31]
Ogasawara M [31]
Sia Y [31]
Worden EJ [31]
Weiss J [30]
Du Y [29]
Liu L [29]
Ai HS [27]
Cheng Y [27]
Hatazawa S [27]
Li W [27]
Narlikar GJ [27]
Wang Y [27]
Xie X [27]
De Ioannes P [26]
Deng Z [26]
Malik D [26]
Pan H [26]
Shih RM [26]
Vecchia L [26]
Huang J [25]
Tong Z [25]
Botuyan MV [24]
Cui G [24]
Hu Q [24]
Mer G [24]
Negishi L [24]
Strauss M [24]
Sun M [24]
Zhao D [24]
Ai H [23]
Jones PA [23]
Kim TH [23]
Lee R [23]
Li JB [23]
Lidschreiber M [23]
Patel AB [23]
Wang M [23]
Alegrio Louro J [22]
Dodonova S [22]
Dombrowski M [22]
Grabbe F [22]
Nogales E [22]
Nudler E [22]
Wolberger C [22]
Yu Z [22]
Armache K-J [21]
Bhandari J [21]
Fierz B [21]
Grand RS [21]
Ito T [21]
Schubeler D [21]
Thompson JR [21]
Valencia-sanchez MI [21]
Zhan Y [21]
Zhang J [21]
Adelman K [20]
Angelov D [20]
Bednar J [20]
Boopathi R [20]
Dimitrov S [20]
Fukagawa T [20]
Hamiche A [20]
Liu T [20]
Roth S [20]

Author by ORCID

Kurumizaka H [94]
Halic M [73]
Sekine SI [53]
Ehara H [51]
Farnung L [41]
Arimura Y [38]
Kujirai T [37]
Chen Z [37]
Armache JP [35]
Weaver TM [34]
Takizawa Y [33]
Louder RK [32]
Shirouzu M [32]
Bilokapic S [32]
Sia Y [31]
Wang H [30]
Wu C [29]
Freudenthal BD [28]
Cheng Y [27]
Park G [27]
Narlikar GJ [27]
Hatazawa S [27]
Shih RM [26]
Chen K [26]
Cramer P [25]
Strauss M [24]
Mer G [24]
Botuyan MV [24]
Patel AB [23]
Dombrowski M [22]
Dodonova S [22]
Bhandari J [21]
Thoma NH [21]
Angelov D [20]
Syau D [20]
Boopathi R [20]
Wolberger C [19]
Ai H [19]
Ali-ahmad A [19]
Zychlinsky A [18]
Prumbaum D [18]
Kale S [18]
Thee S [18]
Raunser S [18]
Gimber N [18]
Nogales E [18]
Huang J [18]
Armache KJ [18]
Tacke S [18]
Raisch T [18]
Worden EJ [18]
Lee R [18]
Boesch DJ [18]
Winkler M [18]
Xu Y [17]
Zhang YZ [17]
Froom R [17]
Abini-agbomson S [17]
De Ioannes P [17]
Yu Y [17]
Wu H [16]
Rahman S [15]
Fukagawa T [15]
Hopfner KP [15]
Valencia-sanchez MI [15]
Sun M [15]
Liu L [14]
Cruz-becerra G [14]
Weiss J [14]
Isbel L [14]
Michael AK [14]
Leschziner AE [14]
Liu T [13]
Roske JJ [13]
Wilson MD [13]
Ng CT [13]
Ruan W [13]
Chen JK [13]
Surana U [13]
Poepsel S [13]
Cai S [13]
Gan L [13]
Nudler E [13]
Shi J [13]
Funabiki H [13]
Kassavetis GA [12]
Ryan BJ [12]
Kadonaga JT [12]
Alegrio-louro J [12]
Louro JA [12]
Zhou BR [12]
Zhu P [12]
Wang Y [11]
Andersch F [11]
Becker PB [11]
Sauer P [11]
Zuber J [11]
Mcginty RK [11]
Eggers N [11]
Makasheva K [11]

Journal

TO BE PUBLISHED [195]
MOL CELL [135]
NAT STRUCT MOL BIOL [127]
NATURE [118]
NAT COMMUN [105]
SCIENCE [94]
NUCLEIC ACIDS RES [85]
ELIFE [38]
STRUCTURE [38]
EMBO J [31]
SCI ADV [26]
BIORXIV [22]
CELL RES [22]
PNAS [20]
CELL REP [17]
J MOL BIOL [16]
EMBO REP [15]
GENES DEV [14]
CELL [13]
CELL DISCOV [12]
SCI REP [12]
NAT CHEM BIOL [10]
J BIOL CHEM [9]
GENES CELLS [8]
J MOL CELL BIOL [8]
PNAS NEXUS [8]
NAT PLANTS [7]
BIOMOLECULES [6]
CHEM [6]
ISCIENCE [5]
ACTA CRYSTALLOGR D STRUCT BIOL [4]
J STRUCT BIOL [4]
FRONT MOL BIOSCI [3]
ANGEW CHEM INT ED ENGL [2]
BIOCHEMISTRY [2]
COMMUN BIOL [2]
IUCRJ [2]
J.BIOCHEM. [2]
LIFE SCI ALLIANCE [2]
OPEN BIOL [2]
PROTEIN SCI [2]
EPIGENOMES [1]
FASEB J [1]
J AM CHEM SOC [1]
NAT CELL BIOL [1]
NAT METHODS [1]

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 1231. Page 1 of 124

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EMD-77248

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3D View

canonical nucleosome in complex with scFv antibodies

CryoEM

Release date: Aug. 5, 2026
Resolution: 3.9 Å
EM Method: Single-particle

Tan D

To Be Published

EMD-63262

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3D View

Cryo-EM structure of the chromatin remodeler Rad26 bound to the nucleosome at SHL6

CryoEM

Release date: July 29, 2026
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9lox

Q-score: 0.356
Similar entry percentile: 19%

Fukushima Y, Takizawa Y, Ogasawara M, Kinoshita C, Haruhiko E, Sekine S, Kagawa W, Kurumizaka H

To Be Published

EMD-57364

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3D View

RNA polymerase II elongation complex with the 1 nucleosome

Composite map

CryoEM

Release date: July 22, 2026
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 29tk

Q-score: 0.33
Similar entry percentile: 28%

Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.06.042 Pubmed: 42480520 ]

EMD-57365

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3D View

Consensus map for RNA Polymerase II elongation complex with the 1 nucleosome

CryoEM

Release date: July 22, 2026
Resolution: 3.9 Å
EM Method: Single-particle

Zhan Y, Abril-Garrido J

To Be Published

EMD-57390

Download Map

3D View

RNA polymerase II initially transcribing complex with a 2-nt RNA and the 1 nucleosome

CryoEM

Release date: July 22, 2026
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 29vf

Q-score: 0.12
Similar entry percentile: 38%

Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.06.042 Pubmed: 42480520 ]

EMD-57391

Download Map

3D View

Focused refinement map of core Pol II

CryoEM

Release date: July 22, 2026
Resolution: 3.27 Å
EM Method: Single-particle

Zhan Y, Abril-Garrido J

To Be Published

EMD-57392

Download Map

3D View

Focused refinement map of nucleosome in RNA polymerase II elongation complex with the 1 nucleosome

CryoEM

Release date: July 22, 2026
Resolution: 3.71 Å
EM Method: Single-particle

Zhan Y, Abril-Garrido J

To Be Published

EMD-57394

Download Map

3D View

Focused refinement map of nucleosome of RNA polymerase II initially transcribing complex with a 2-nt RNA and the 1 nucleosome

CryoEM

Release date: July 22, 2026
Resolution: 7.2 Å
EM Method: Single-particle

Zhan Y, Abril-Garrido J

To Be Published

EMD-57395

Download Map

3D View

Focused refinement map of cPIC of RNA polymerase II initially transcribing complex with a 2-nt RNA and the 1 nucleosome

CryoEM

Release date: July 22, 2026
Resolution: 4.26 Å
EM Method: Single-particle

Zhan Y, Abril-Garrido J

To Be Published

EMD-57401

Download Map

3D View

RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the 1 nucleosome

CryoEM

Release date: July 22, 2026
Resolution: 4.2 Å
EM Method: Single-particle

Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

Mol Cell (2026) [ DOI: doi:10.1016/j.molcel.2026.06.042 Pubmed: 42480520 ]

Sort by: Download

Showing 1 - 10 of 1231. Page 1 of 124

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [861]
Synthetic construct [484]
Xenopus laevis [417]
Saccharomyces cerevisiae [102]
Saccharomyces cerevisiae [63]
Mus musculus [61]
Sus scrofa [49]
Escherichia coli [34]
Arabidopsis thaliana [30]
Drosophila melanogaster [29]
Komagataella phaffii [22]
Unidentified adenovirus [19]
Komagataella phaffii [17]
Escherichia coli [14]
Xenopus borealis [12]
Gallus gallus [11]
Komagataella phaffii [7]
Schizosaccharomyces pombe [5]
Chaetomium thermophilum [5]
Xenopus calcaratus [4]
Komagataella pastoris [4]
(no species) [4]
(no species) [4]
Escherichia coli [4]
Escherichia coli [4]
Trypanosoma brucei [3]
Chaetomium thermophilum [3]
Kluyveromyces lactis [3]
Melbournevirus [2]
Homo sapiens environmental sample [2]
(no species) [2]
Xenopus laevis [2]
(no species) [2]
(no species) [2]
Marseillevirus marseillevirus [2]
Xenopus tropicalis [2]
Ramazzottius varieornatus [2]
Rattus norvegicus [1]
Human immunodeficiency virus 1 [1]
Simian foamy virus [1]
Streptococcus pyogenes [1]
Pyrobaculum filamentous virus 1 [1]
Saccharomyces killer virus m2-4 [1]
Synthetic rna [1]
(no species) [1]
Ectocarpus siliculosus [1]
Medusavirus medusae [1]
Escherichia coli [1]
Schizosaccharomyces pombe [1]
Candida norvegensis [1]
Giardia intestinalis [1]
Saccharomyces cerevisiae [1]
Linanthus concinnus [1]
Trichoplusia ni [1]
(no species) [1]
Petromyzon marinus [1]
Xenopus lenduensis [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Kurumizaka H [122]
Cramer P [94]
Takizawa Y [77]
Dienemann C [76]
Halic M [74]
Bilokapic S [60]
Kujirai T [59]
Farnung L [54]
Ehara H [53]
Sekine SI [53]
Armache JP [46]
Weaver TM [46]
Chen Z [45]
Cavadini S [44]
Thoma NH [44]
Engeholm M [43]
Arimura Y [38]
Bai Y [37]
Kempf G [37]
Sekine S [36]
Chen K [35]
Shirouzu M [35]
Freudenthal BD [34]
Kater L [34]
Wang H [34]
Wu C [34]
Zhang Y [34]
Zhou BR [34]
Liu M [32]
Louder RK [32]
Park G [32]
Zhou XE [32]
Abril-garrido J [31]
Armache J-P [31]
Armache KJ [31]
Funabiki H [31]
Ogasawara M [31]
Sia Y [31]
Worden EJ [31]
Weiss J [30]
Du Y [29]
Liu L [29]
Ai HS [27]
Cheng Y [27]
Hatazawa S [27]
Li W [27]
Narlikar GJ [27]
Wang Y [27]
Xie X [27]
De Ioannes P [26]
Deng Z [26]
Malik D [26]
Pan H [26]
Shih RM [26]
Vecchia L [26]
Huang J [25]
Tong Z [25]
Botuyan MV [24]
Cui G [24]
Hu Q [24]
Mer G [24]
Negishi L [24]
Strauss M [24]
Sun M [24]
Zhao D [24]
Ai H [23]
Jones PA [23]
Kim TH [23]
Lee R [23]
Li JB [23]
Lidschreiber M [23]
Patel AB [23]
Wang M [23]
Alegrio Louro J [22]
Dodonova S [22]
Dombrowski M [22]
Grabbe F [22]
Nogales E [22]
Nudler E [22]
Wolberger C [22]
Yu Z [22]
Armache K-J [21]
Bhandari J [21]
Fierz B [21]
Grand RS [21]
Ito T [21]
Schubeler D [21]
Thompson JR [21]
Valencia-sanchez MI [21]
Zhan Y [21]
Zhang J [21]
Adelman K [20]
Angelov D [20]
Bednar J [20]
Boopathi R [20]
Dimitrov S [20]
Fukagawa T [20]
Hamiche A [20]
Liu T [20]
Roth S [20]

Author by ORCID

Kurumizaka H [94]
Halic M [73]
Sekine SI [53]
Ehara H [51]
Farnung L [41]
Arimura Y [38]
Kujirai T [37]
Chen Z [37]
Armache JP [35]
Weaver TM [34]
Takizawa Y [33]
Louder RK [32]
Shirouzu M [32]
Bilokapic S [32]
Sia Y [31]
Wang H [30]
Wu C [29]
Freudenthal BD [28]
Cheng Y [27]
Park G [27]
Narlikar GJ [27]
Hatazawa S [27]
Shih RM [26]
Chen K [26]
Cramer P [25]
Strauss M [24]
Mer G [24]
Botuyan MV [24]
Patel AB [23]
Dombrowski M [22]
Dodonova S [22]
Bhandari J [21]
Thoma NH [21]
Angelov D [20]
Syau D [20]
Boopathi R [20]
Wolberger C [19]
Ai H [19]
Ali-ahmad A [19]
Zychlinsky A [18]
Prumbaum D [18]
Kale S [18]
Thee S [18]
Raunser S [18]
Gimber N [18]
Nogales E [18]
Huang J [18]
Armache KJ [18]
Tacke S [18]
Raisch T [18]
Worden EJ [18]
Lee R [18]
Boesch DJ [18]
Winkler M [18]
Xu Y [17]
Zhang YZ [17]
Froom R [17]
Abini-agbomson S [17]
De Ioannes P [17]
Yu Y [17]
Wu H [16]
Rahman S [15]
Fukagawa T [15]
Hopfner KP [15]
Valencia-sanchez MI [15]
Sun M [15]
Liu L [14]
Cruz-becerra G [14]
Weiss J [14]
Isbel L [14]
Michael AK [14]
Leschziner AE [14]
Liu T [13]
Roske JJ [13]
Wilson MD [13]
Ng CT [13]
Ruan W [13]
Chen JK [13]
Surana U [13]
Poepsel S [13]
Cai S [13]
Gan L [13]
Nudler E [13]
Shi J [13]
Funabiki H [13]
Kassavetis GA [12]
Ryan BJ [12]
Kadonaga JT [12]
Alegrio-louro J [12]
Louro JA [12]
Zhou BR [12]
Zhu P [12]
Wang Y [11]
Andersch F [11]
Becker PB [11]
Sauer P [11]
Zuber J [11]
Mcginty RK [11]
Eggers N [11]
Makasheva K [11]

Journal

TO BE PUBLISHED [195]
MOL CELL [135]
NAT STRUCT MOL BIOL [127]
NATURE [118]
NAT COMMUN [105]
SCIENCE [94]
NUCLEIC ACIDS RES [85]
ELIFE [38]
STRUCTURE [38]
EMBO J [31]
SCI ADV [26]
BIORXIV [22]
CELL RES [22]
PNAS [20]
CELL REP [17]
J MOL BIOL [16]
EMBO REP [15]
GENES DEV [14]
CELL [13]
CELL DISCOV [12]
SCI REP [12]
NAT CHEM BIOL [10]
J BIOL CHEM [9]
GENES CELLS [8]
J MOL CELL BIOL [8]
PNAS NEXUS [8]
NAT PLANTS [7]
BIOMOLECULES [6]
CHEM [6]
ISCIENCE [5]
ACTA CRYSTALLOGR D STRUCT BIOL [4]
J STRUCT BIOL [4]
FRONT MOL BIOSCI [3]
ANGEW CHEM INT ED ENGL [2]
BIOCHEMISTRY [2]
COMMUN BIOL [2]
IUCRJ [2]
J.BIOCHEM. [2]
LIFE SCI ALLIANCE [2]
OPEN BIOL [2]
PROTEIN SCI [2]
EPIGENOMES [1]
FASEB J [1]
J AM CHEM SOC [1]
NAT CELL BIOL [1]
NAT METHODS [1]

Software

Microscope

Electron Source

Film or detector model

External links