Electron Microscopy Data Bank

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sample_name:"Microtubule"

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Current Database

Current status

Sample type

Organism

Homo sapiens [503]
Sus scrofa [159]
Bos taurus [125]
Mus musculus [93]
Tetrahymena thermophila [57]
Leishmania tarentolae [39]
Chlamydomonas reinhardtii [31]
Drosophila melanogaster [24]
Xenopus laevis [16]
Sus scrofa [15]
Rattus norvegicus [11]
Danio rerio [11]
Schizosaccharomyces pombe [9]
Toxoplasma gondii [8]
Caenorhabditis elegans [7]
Candidatus lokiarchaeum ossiferum [6]
Candida albicans [6]
Paramecium tetraurelia [6]
Bordetella bronchiseptica [5]
Synthetic construct [5]
Saccharomyces cerevisiae [5]
Saccharomyces cerevisiae [5]
Cricetulus griseus [3]
Schizosaccharomyces pombe [3]
(no species) [3]
Plasmodium falciparum [3]
Trypanosoma brucei [3]
(no species) [3]
Aquareovirus c [2]
Tetrahymena thermophila [2]
Toxoplasma gondii [2]
Naegleria gruberi [2]
Strongylocentrotus purpuratus [2]
(no species) [1]
Candidatus heimdallarchaeota archaeon [1]
Saccharomyces uvarum [1]
Severe acute respiratory syndrome coronavirus [1]
Trichomonas vaginalis [1]
Dictyostelium discoideum [1]
Prosthecobacter dejongeii [1]
Prosthecobacter vanneervenii [1]
Escherichia coli [1]
Leishmania mexicana [1]
Recombinant vesicular stomatitis indiana virus rvsv-g/gfp [1]
Plasmodium falciparum [1]
Schistosoma japonicum [1]
(no species) [1]
(no species) [1]
Canis lupus [1]
Giraffa camelopardalis [1]
Capra hircus [1]

EM Method

Resolution

Release Date

Author by name

Goedert M [154]
Scheres SHW [153]
Zhang R [134]
Murzin AG [126]
Brown A [112]
Lovestam S [98]
Kotecha A [88]
Zeng J [81]
Agard DA [68]
Lishko PV [64]
Moores CA [57]
Nogales E [56]
Li D [55]
Ghetti B [52]
Dutcher SK [51]
Freund SMV [48]
Wagstaff JL [48]
Huang W [47]
Kimanius D [45]
Mclaughlin SH [45]
Sosa H [45]
Asenjo AB [44]
Steinmetz MO [44]
Leung MR [43]
Wang X [43]
Zeev-ben-mordehai T [43]
Benoit MPMH [42]
Xu H [42]
Niu Q [41]
Changolkar L [40]
Heck AJR [40]
Hevler JF [40]
Lee EB [40]
Lee VM [40]
Roelofs MC [40]
Zenezini Chiozzi R [40]
Beneke T [39]
Doran MH [39]
Fochler S [39]
Gluenz E [39]
Smith J [39]
Wheeler RJ [39]
Baltazar A [38]
Burslem GM [38]
Chang YW [38]
Creekmore BC [38]
Darwich NF [38]
Hoog JL [38]
Hoxha K [38]
O Rourke Cm [38]
Salphati S [38]
Smith CL [38]
Watanabe R [38]
Zhang B [38]
Meleppattu S [36]
Vale RD [36]
Coscia A [34]
Garringer HJ [34]
Li S [34]
Ren P [34]
Shi Y [34]
Yu Z [34]
Vidal R [33]
Rosenfeld SS [32]
Chretien D [31]
Koh FA [31]
Van Knippenberg B [31]
Chen Z [30]
Greenan GA [30]
Guo C [30]
Shiozak M [30]
Shiozaki M [30]
Skinner W [30]
Skinner WM [30]
Zhao S [30]
Falcon B [29]
Hasegawa M [29]
Liu Y [29]
Bui KH [28]
Duchesne L [28]
Heichette C [28]
Winey M [27]
Atherton J [26]
Fernandez JJ [26]
Qi C [26]
Greenan AG [25]
Yan R [25]
Zhao X [25]
Fabritius A [23]
Alushin GM [22]
Major J [22]
Bousquet C [21]
Gaillard N [21]
Gibeaux R [21]
Guilloux G [21]
Guyomar C [21]
Heumann JM [21]
Ku S [21]
Kwok BH [21]
Surrey T [21]

Journal

NAT STRUCT MOL BIOL [118]
NAT COMMUN [111]
ELIFE [101]
NATURE [87]
CELL [86]
BIORXIV [84]
PNAS [74]
SCIENCE [47]
TO BE PUBLISHED [34]
ACTA NEUROPATHOL [33]
EMBO J [26]
J CELL BIOL [26]
J MOL BIOL [18]
NAT CELL BIOL [18]
LIFE SCI ALLIANCE [16]
MOL BIOL CELL [16]
SCI ADV [15]
J BIOL CHEM [14]
STRUCTURE [14]
J STRUCT BIOL [9]
NAT METHODS [9]
CURR BIOL [8]
DEV CELL [7]
NAT CHEM [7]
NAT CHEM BIOL [7]
CELL DISCOV [6]
SCI REP [5]
ACTA CRYSTALLOGR D STRUCT BIOL [4]
ISCIENCE [4]
J MICROSC [4]
ACTA BIOCHIM.BIOPHYS.SIN. [3]
EMBO REP [3]
FEBS OPEN BIO [3]
PLOS GENET [3]
FEBS LETT [2]
OPEN BIOL [2]
PROTEIN CELL [2]
ACS CENT SCI [1]
CELL REP [1]
CELL RES [1]
CYTOSKELETON [1]
J AM CHEM SOC [1]
J CELL SCI [1]
J VIS EXP [1]
MICROSC MICROANAL [1]
NEURON [1]
SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]

Software

RELION [454]
CRYOSPARC [58]
FREALIGN [56]
IMOD [47]
CTFFIND [45]
PEET [32]
SPIDER [31]
SPIDER, FREALIGN [27]
EMAN [16]
EMAN2 [16]
GCTF [16]
CHIMERA [15]
EMAN1, FREALIGN [9]
DYNAMO [8]
MATLAB [8]
CHIMERA, FLEX-EM [7]
CRYOLO [7]
UCSF CHIMERA [6]
APPION [5]
ETOMO [5]
PHENIX [5]
XMIPP [5]
CHIMERA, FLEXEM [4]
EMAN2/SPARX [4]
ETOMO, IMOD [4]
SPIDER,FREALIGN [4]
WARP [4]
COOT [3]
ETOMO, FROM, IMOD, SOFTWARE [3]
FREALIX [3]
PHOELIX [3]
PHOELIX, SUPRIM [3]
ROSETTA [3]
RUBY-HELIX [3]
SPIDER, EMAN, IHRSR, BSOFT [3]
TOMOALIGN [3]
AMIRA, IMOD [2]
CTFFIND4 [2]
EMAN2, FREALIGN, IHRSR [2]
EMCLARITY [2]
MDFF [2]
NOVACTF [2]
PHOELIX, SUPREME [2]
SITUS [2]
AV3 [1]
BSOFT [1]
CHIMERA, MODELLER [1]
COLORES [1]
CTFFIND3 [1]
CTFPHASEFLIP [1]
DIREX [1]
EMAN2, FREALIGN [1]
EMAN2/SPARX, FREALIGN [1]
IMOD, PEET [1]
ISOLDE [1]
MATLAB, IMAGEV [1]
MATLAB, IMAGICV [1]
MRC, SUPRIM, PHOELIX, OTHER [1]
PHASER [1]
PRIISM [1]
PYTOM [1]
SPIDER, IHRSR, CTFFIND3, CUSTOM [1]
STOPGAP [1]
SUPRIM, PHOELIX, IHRSR, SPIDER, CTFFIND3, CUSTOM, EMGLUE.PY [1]
UCSF CHIMERAX [1]
XDS [1]
XSCALE [1]

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 969. Page 1 of 97

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EMD-79047

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Microtubule bundles in metaphase RPE1 spindles

CryoEM

Release date: Sept. 30, 2026
EM Method: Tomography

Conway W, Bobe D, Zimyanin V, Fabig G, de Marco A, Redemann S

bioRxiv (2026) [ DOI: doi:10.64898/2026.01.16.699769 Pubmed: 41648357 ]

EMD-76188

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In situ subtomogram average of the transition zone doublet microtubule in human airway cilia composite map

Composite map

CryoEM

Release date: Sept. 9, 2026
Resolution: 7.3 Å
EM Method: Subtomogram averaging
Fitted PDBs: 11yj

Q-score: 0.122
Similar entry percentile: 33%

Zhou H, Terbeck L, Berical A, Brunet M, Lange SM, Anderson JR, Olbrich H, Bracht DC, Wohlgemuth K, Rieck C, Raidt J, Klingauf J, Sutharsan S, Mussaffi H, Prais D, Dunphy V, Homma ST, Guichard P, Hamel V, Hawkins FJ, Omran H, Brown A

Science (2026) pp. eaei5957-eaei5957 [ Pubmed: 42721274 DOI: doi:10.1126/science.aei5957 ]

EMD-58507

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Discodermolide stabilised 14-protofilament microtubule C1 reconstruction

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.73 Å
EM Method: Single-particle

Meiring JCM, Mahapatra V, Liu RR, Gravett MSC, Morren D, Saunders HAJ, Choi SR, Pelster Jose A, Karhanova A, Metallidou I, Moore A, Spoelstra MFM, Grigoriev IS, Giono M, Iyer SS, Stehbens SJ, Diaz JF, Lansky Z, Stecker KE, Steinmetz MO, Howes SC, Kapitein LC, Akhmanova A

bioRxiv (2025) [ DOI: doi:10.64898/2025.12.20.695343 ]

EMD-58509

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Discodermolide stabilised 13-protofilament microtubule C1 reconstruction

CryoEM

Release date: Sept. 2, 2026
Resolution: 3.47 Å
EM Method: Single-particle

bioRxiv (2025) [ DOI: doi:10.64898/2025.12.20.695343 ]

EMD-66009

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Cryo-EM structure of recombinant mutant tau filaments

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 9wit

Q-score: 0.632
Similar entry percentile: 96%

Sato Y, Suzukake MM, Kawasaki M, Moriya T, Senda M, Senda T, Hisanaga S, Hasegawa M, Nonaka T

To Be Published

EMD-73621

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u-VT Ie tau filament from VT Case 3

CryoEM

Release date: Sept. 2, 2026
Resolution: 3.98 Å
EM Method: Helical reconstruction

Watanabe R, Creekmore BC, Darwich NF, Smith CL, Xu H, Baltazar A, Salphati S, Changolkar L, Hoxha K, Zhang B, O'Rourke CM, Burslem GM, Lee VM, Chang YW, Lee EB

Nat Struct Mol Biol (2026) [ Pubmed: 42675211 DOI: doi:10.1038/s41594-026-01879-4 ]

EMD-73624

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u-VT II tau filament from VT Case 3

CryoEM

Release date: Sept. 2, 2026
Resolution: 3.8 Å
EM Method: Helical reconstruction

Watanabe R, Creekmore BC, Darwich NF, Smith CL, Xu H, Baltazar A, Salphati S, Changolkar L, Hoxha K, Zhang B, O'Rourke CM, Burslem GM, Lee VM, Chang YW, Lee EB

Nat Struct Mol Biol (2026) [ Pubmed: 42675211 DOI: doi:10.1038/s41594-026-01879-4 ]

EMD-73626

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u-VT IV tau filament from VT Case 3

CryoEM

Release date: Sept. 2, 2026
Resolution: 3.69 Å
EM Method: Helical reconstruction

Watanabe R, Creekmore BC, Darwich NF, Smith CL, Xu H, Baltazar A, Salphati S, Changolkar L, Hoxha K, Zhang B, O'Rourke CM, Burslem GM, Lee VM, Chang YW, Lee EB

Nat Struct Mol Biol (2026) [ Pubmed: 42675211 DOI: doi:10.1038/s41594-026-01879-4 ]

EMD-75271

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VT Ia tau filament from VT Case 1

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.92 Å
EM Method: Helical reconstruction
Fitted PDBs: 10ln

Q-score: 0.599
Similar entry percentile: 93%

Watanabe R, Creekmore BC, Darwich NF, Smith CL, Xu H, Baltazar A, Salphati S, Changolkar L, Hoxha K, Zhang B, O'Rourke CM, Burslem GM, Lee VM, Chang YW, Lee EB

Nat Struct Mol Biol (2026) [ Pubmed: 42675211 DOI: doi:10.1038/s41594-026-01879-4 ]

EMD-75292

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VT II tau filament from VT Case 1

CryoEM

Release date: Sept. 2, 2026
Resolution: 3.14 Å
EM Method: Helical reconstruction
Fitted PDBs: 10mr

Q-score: 0.571
Similar entry percentile: 91%

Watanabe R, Creekmore BC, Darwich NF, Smith CL, Xu H, Baltazar A, Salphati S, Changolkar L, Hoxha K, Zhang B, O'Rourke CM, Burslem GM, Lee VM, Chang YW, Lee EB

Nat Struct Mol Biol (2026) [ Pubmed: 42675211 DOI: doi:10.1038/s41594-026-01879-4 ]

Sort by: Download

Showing 1 - 10 of 969. Page 1 of 97

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [503]
Sus scrofa [159]
Bos taurus [125]
Mus musculus [93]
Tetrahymena thermophila [57]
Leishmania tarentolae [39]
Chlamydomonas reinhardtii [31]
Drosophila melanogaster [24]
Xenopus laevis [16]
Sus scrofa [15]
Rattus norvegicus [11]
Danio rerio [11]
Schizosaccharomyces pombe [9]
Toxoplasma gondii [8]
Caenorhabditis elegans [7]
Candidatus lokiarchaeum ossiferum [6]
Candida albicans [6]
Paramecium tetraurelia [6]
Bordetella bronchiseptica [5]
Synthetic construct [5]
Saccharomyces cerevisiae [5]
Saccharomyces cerevisiae [5]
Cricetulus griseus [3]
Schizosaccharomyces pombe [3]
(no species) [3]
Plasmodium falciparum [3]
Trypanosoma brucei [3]
(no species) [3]
Aquareovirus c [2]
Tetrahymena thermophila [2]
Toxoplasma gondii [2]
Naegleria gruberi [2]
Strongylocentrotus purpuratus [2]
(no species) [1]
Candidatus heimdallarchaeota archaeon [1]
Saccharomyces uvarum [1]
Severe acute respiratory syndrome coronavirus [1]
Trichomonas vaginalis [1]
Dictyostelium discoideum [1]
Prosthecobacter dejongeii [1]
Prosthecobacter vanneervenii [1]
Escherichia coli [1]
Leishmania mexicana [1]
Recombinant vesicular stomatitis indiana virus rvsv-g/gfp [1]
Plasmodium falciparum [1]
Schistosoma japonicum [1]
(no species) [1]
(no species) [1]
Canis lupus [1]
Giraffa camelopardalis [1]
Capra hircus [1]

EM Method

Resolution

Release Date

Author by name

Goedert M [154]
Scheres SHW [153]
Zhang R [134]
Murzin AG [126]
Brown A [112]
Lovestam S [98]
Kotecha A [88]
Zeng J [81]
Agard DA [68]
Lishko PV [64]
Moores CA [57]
Nogales E [56]
Li D [55]
Ghetti B [52]
Dutcher SK [51]
Freund SMV [48]
Wagstaff JL [48]
Huang W [47]
Kimanius D [45]
Mclaughlin SH [45]
Sosa H [45]
Asenjo AB [44]
Steinmetz MO [44]
Leung MR [43]
Wang X [43]
Zeev-ben-mordehai T [43]
Benoit MPMH [42]
Xu H [42]
Niu Q [41]
Changolkar L [40]
Heck AJR [40]
Hevler JF [40]
Lee EB [40]
Lee VM [40]
Roelofs MC [40]
Zenezini Chiozzi R [40]
Beneke T [39]
Doran MH [39]
Fochler S [39]
Gluenz E [39]
Smith J [39]
Wheeler RJ [39]
Baltazar A [38]
Burslem GM [38]
Chang YW [38]
Creekmore BC [38]
Darwich NF [38]
Hoog JL [38]
Hoxha K [38]
O Rourke Cm [38]
Salphati S [38]
Smith CL [38]
Watanabe R [38]
Zhang B [38]
Meleppattu S [36]
Vale RD [36]
Coscia A [34]
Garringer HJ [34]
Li S [34]
Ren P [34]
Shi Y [34]
Yu Z [34]
Vidal R [33]
Rosenfeld SS [32]
Chretien D [31]
Koh FA [31]
Van Knippenberg B [31]
Chen Z [30]
Greenan GA [30]
Guo C [30]
Shiozak M [30]
Shiozaki M [30]
Skinner W [30]
Skinner WM [30]
Zhao S [30]
Falcon B [29]
Hasegawa M [29]
Liu Y [29]
Bui KH [28]
Duchesne L [28]
Heichette C [28]
Winey M [27]
Atherton J [26]
Fernandez JJ [26]
Qi C [26]
Greenan AG [25]
Yan R [25]
Zhao X [25]
Fabritius A [23]
Alushin GM [22]
Major J [22]
Bousquet C [21]
Gaillard N [21]
Gibeaux R [21]
Guilloux G [21]
Guyomar C [21]
Heumann JM [21]
Ku S [21]
Kwok BH [21]
Surrey T [21]

Journal

NAT STRUCT MOL BIOL [118]
NAT COMMUN [111]
ELIFE [101]
NATURE [87]
CELL [86]
BIORXIV [84]
PNAS [74]
SCIENCE [47]
TO BE PUBLISHED [34]
ACTA NEUROPATHOL [33]
EMBO J [26]
J CELL BIOL [26]
J MOL BIOL [18]
NAT CELL BIOL [18]
LIFE SCI ALLIANCE [16]
MOL BIOL CELL [16]
SCI ADV [15]
J BIOL CHEM [14]
STRUCTURE [14]
J STRUCT BIOL [9]
NAT METHODS [9]
CURR BIOL [8]
DEV CELL [7]
NAT CHEM [7]
NAT CHEM BIOL [7]
CELL DISCOV [6]
SCI REP [5]
ACTA CRYSTALLOGR D STRUCT BIOL [4]
ISCIENCE [4]
J MICROSC [4]
ACTA BIOCHIM.BIOPHYS.SIN. [3]
EMBO REP [3]
FEBS OPEN BIO [3]
PLOS GENET [3]
FEBS LETT [2]
OPEN BIOL [2]
PROTEIN CELL [2]
ACS CENT SCI [1]
CELL REP [1]
CELL RES [1]
CYTOSKELETON [1]
J AM CHEM SOC [1]
J CELL SCI [1]
J VIS EXP [1]
MICROSC MICROANAL [1]
NEURON [1]
SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]

Software

RELION [454]
CRYOSPARC [58]
FREALIGN [56]
IMOD [47]
CTFFIND [45]
PEET [32]
SPIDER [31]
SPIDER, FREALIGN [27]
EMAN [16]
EMAN2 [16]
GCTF [16]
CHIMERA [15]
EMAN1, FREALIGN [9]
DYNAMO [8]
MATLAB [8]
CHIMERA, FLEX-EM [7]
CRYOLO [7]
UCSF CHIMERA [6]
APPION [5]
ETOMO [5]
PHENIX [5]
XMIPP [5]
CHIMERA, FLEXEM [4]
EMAN2/SPARX [4]
ETOMO, IMOD [4]
SPIDER,FREALIGN [4]
WARP [4]
COOT [3]
ETOMO, FROM, IMOD, SOFTWARE [3]
FREALIX [3]
PHOELIX [3]
PHOELIX, SUPRIM [3]
ROSETTA [3]
RUBY-HELIX [3]
SPIDER, EMAN, IHRSR, BSOFT [3]
TOMOALIGN [3]
AMIRA, IMOD [2]
CTFFIND4 [2]
EMAN2, FREALIGN, IHRSR [2]
EMCLARITY [2]
MDFF [2]
NOVACTF [2]
PHOELIX, SUPREME [2]
SITUS [2]
AV3 [1]
BSOFT [1]
CHIMERA, MODELLER [1]
COLORES [1]
CTFFIND3 [1]
CTFPHASEFLIP [1]
DIREX [1]
EMAN2, FREALIGN [1]
EMAN2/SPARX, FREALIGN [1]
IMOD, PEET [1]
ISOLDE [1]
MATLAB, IMAGEV [1]
MATLAB, IMAGICV [1]
MRC, SUPRIM, PHOELIX, OTHER [1]
PHASER [1]
PRIISM [1]
PYTOM [1]
SPIDER, IHRSR, CTFFIND3, CUSTOM [1]
STOPGAP [1]
SUPRIM, PHOELIX, IHRSR, SPIDER, CTFFIND3, CUSTOM, EMGLUE.PY [1]
UCSF CHIMERAX [1]
XDS [1]
XSCALE [1]

Microscope

Electron Source

Film or detector model

External links