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sample_name:"Human papillomavirus 16"

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Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Virus [17]
  • Protein [12]
  • Sample [11]
  • Ligand [1]

Organism

  • Alphapapillomavirus 9 [11]
  • Mus musculus [6]
  • Alphapapillomavirus 9 [6]

EM Method

  • Single-particle [17]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [2]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [7]

Model molecular weight

  • 250-500 kDa [1]
  • > 10 MDa [6]

Release Date

  • 2026 [5]
  • 2025 [1]
  • 2017 [2]
  • 2015 [3]
  • 2014 [6]

Author by name

  • Ashley RE [11]
  • Brendle SA [11]
  • Bywaters SM [11]
  • Christensen ND [11]
  • Conway JF [11]
  • Guan J [11]
  • Hafenstein S [11]
  • Makhov AM [11]
  • Lee H [9]
  • Yoder JD [6]
  • Hafenstein SL [5]
  • Langley CH [5]
  • Ashley R [1]
  • Brendle S [1]
  • Bywaters S [1]
  • Christensen N [1]
  • Mosalaganti S [1]
  • Rana J [1]
  • Sutanto R [1]
  • Tsai B [1]

Author by ORCID

  • Ashley RE [11]
  • Conway JF [11]
  • Bywaters SM [11]
  • Lee H [9]
  • Hafenstein SL [5]
  • Langley CH [5]
  • Mosalaganti S [1]

Journal

  • J VIROL [6]
  • TO BE PUBLISHED [5]
  • VIROLOGY [3]
  • STRUCTURE [2]
  • BIORXIV [1]

Software

  • AUTO3DEM [11]
  • CHIMERA, SITUS [4]
  • CRYOSPARC [1]
  • CTFFIND [1]
  • PHENIX, SITUS, NAMD [1]

Microscope

  • JEOL 2100 [6]
  • TFS KRIOS [6]
  • FEI TECNAI F20 [3]
  • FEI POLARA 300 [2]

Electron Source

  • FIELD EMISSION GUN [11]
  • LAB6 [6]

Film or detector model

  • GATAN ULTRASCAN 4000 4K X 4K [6]
  • FEI FALCON IV 4K X 4K [5]
  • KODAK SO-163 FILM [3]
  • FEI FALCON II 4K X 4K [2]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [17]
  • PDBe-Kb [5]
  • UniProt [5]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • Pfam [1]
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Showing 1 - 10 of 17. Page 1 of 2
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EMD-70163
Download Map
3D View
Subparticle map of HPV16 pentavalent capsomer
Focused map
CryoEM
Release date: May 6, 2026
Resolution: 1.9 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-70164
Download Map
3D View
Subparticle map of HPV16 hexavalent capsomer
CryoEM
Focused map
Release date: May 6, 2026
Resolution: 1.92 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-70167
Download Map
3D View
Subparticle map of HPV16 hexavalent capsomer
Consensus map
CryoEM
Release date: May 6, 2026
Resolution: 2.42 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-70186
Download Map
3D View
HPV16 capsid bound to heparin
CryoEM
Release date: May 6, 2026
Resolution: 2.76 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-49960
Download Map
3D View
Atomic resolution cryoEM structure of HPV16 bound to heparin
Composite map
CryoEM
Release date: April 29, 2026
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9nzu
Q-score: 0.785

Langley CH, Hafenstein SL

To Be Published

EMD-72538
Download Map
3D View
Human papillomavirus purified from lysosomes
CryoEM
Release date: Dec. 10, 2025
Resolution: 6.3 Å
EM Method: Single-particle

Sutanto R, Rana J, Tsai B, Mosalaganti S

bioRxiv (2025) [ Pubmed: 40949969 DOI: doi:10.1101/2025.09.06.674660 ]

EMD-6619
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3D View
Electron cryo-microscopy of Human Papillomavirus
CryoEM
Release date: Jan. 25, 2017
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 5keq
Q-score: 0.287

Guan J, Bywaters SM, Brendle SA, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

Structure (2017) 25 pp. 253-263 [ DOI: doi:10.1016/j.str.2016.12.001 Pubmed: 28065506 ]

EMD-6620
Download Map
3D View
Electron cryo-microscopy of Human Papillomavirus
CryoEM
Release date: Jan. 25, 2017
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 5kep
Q-score: 0.333

Guan J, Bywaters SM, Brendle SA, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

Structure (2017) 25 pp. 253-263 [ DOI: doi:10.1016/j.str.2016.12.001 Pubmed: 28065506 ]

EMD-5990
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3D View
Electron cryo-microscopy of quasi-human papillomavirus 16 complexed with Fab H16.1A
CryoEM
Release date: May 6, 2015
Resolution: 14.0 Å
EM Method: Single-particle
Fitted PDBs: 3j8z
Q-score: 0.021

Guan J, Bywaters SM, Brendle SA, Lee H, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

Virology (2015) 483 pp. 253-263 [ DOI: doi:10.1016/j.virol.2015.04.016 Pubmed: 25996608 ]

EMD-6121
Download Map
3D View
Cryo-EM reconstruction of quasi-HPV16 complexed with H16.14J Fab
CryoEM
Release date: May 6, 2015
Resolution: 13.9 Å
EM Method: Single-particle
Fitted PDBs: 3j8v
Q-score: 0.068

Guan J, Bywaters SM, Brendle SA, Lee H, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

Virology (2015) 483 pp. 253-263 [ DOI: doi:10.1016/j.virol.2015.04.016 Pubmed: 25996608 ]

Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Virus [17]
  • Protein [12]
  • Sample [11]
  • Ligand [1]

Organism

  • Alphapapillomavirus 9 [11]
  • Mus musculus [6]
  • Alphapapillomavirus 9 [6]

EM Method

  • Single-particle [17]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [2]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [7]

Model molecular weight

  • 250-500 kDa [1]
  • > 10 MDa [6]

Release Date

  • 2026 [5]
  • 2025 [1]
  • 2017 [2]
  • 2015 [3]
  • 2014 [6]

Author by name

  • Ashley RE [11]
  • Brendle SA [11]
  • Bywaters SM [11]
  • Christensen ND [11]
  • Conway JF [11]
  • Guan J [11]
  • Hafenstein S [11]
  • Makhov AM [11]
  • Lee H [9]
  • Yoder JD [6]
  • Hafenstein SL [5]
  • Langley CH [5]
  • Ashley R [1]
  • Brendle S [1]
  • Bywaters S [1]
  • Christensen N [1]
  • Mosalaganti S [1]
  • Rana J [1]
  • Sutanto R [1]
  • Tsai B [1]

Author by ORCID

  • Ashley RE [11]
  • Conway JF [11]
  • Bywaters SM [11]
  • Lee H [9]
  • Hafenstein SL [5]
  • Langley CH [5]
  • Mosalaganti S [1]

Journal

  • J VIROL [6]
  • TO BE PUBLISHED [5]
  • VIROLOGY [3]
  • STRUCTURE [2]
  • BIORXIV [1]

Software

  • AUTO3DEM [11]
  • CHIMERA, SITUS [4]
  • CRYOSPARC [1]
  • CTFFIND [1]
  • PHENIX, SITUS, NAMD [1]

Microscope

  • JEOL 2100 [6]
  • TFS KRIOS [6]
  • FEI TECNAI F20 [3]
  • FEI POLARA 300 [2]

Electron Source

  • FIELD EMISSION GUN [11]
  • LAB6 [6]

Film or detector model

  • GATAN ULTRASCAN 4000 4K X 4K [6]
  • FEI FALCON IV 4K X 4K [5]
  • KODAK SO-163 FILM [3]
  • FEI FALCON II 4K X 4K [2]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [17]
  • PDBe-Kb [5]
  • UniProt [5]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • Pfam [1]