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sample_name:"Human canonical histone and 601 DNA"

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Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • DNA [3]
  • Protein [3]

Organism

  • Synthetic construct [3]
  • Homo sapiens [3]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [3]

Model molecular weight

  • 100-250 kDa [3]

Release Date

  • 2026 [1]
  • 2024 [2]

Author by name

  • Deng M [2]
  • Ding D [2]
  • Ding DB [2]
  • Ishibashi T [2]
  • Liu Y [2]
  • Nguyen TT [2]
  • Pang MYH [2]
  • Sun X [2]
  • Xu Z [2]
  • Yan Y [2]
  • Zhai Y [2]
  • Zhang Y [2]
  • Ji G [1]
  • Ji GY [1]
  • Li H [1]
  • Li HT [1]
  • Li J [1]
  • Ma J [1]
  • Ren M [1]
  • Shan X [1]
  • Shan XJ [1]
  • Zhou C [1]
  • Zhou CZ [1]
  • Zhou Y [1]

Author by ORCID

  • Ishibashi T [2]
  • Yan Y [2]
  • Nguyen TT [2]
  • Zhai Y [2]
  • Ding D [2]
  • Pang MYH [2]
  • Li H [1]
  • Zhou C [1]

Journal

  • NUCLEIC ACIDS RES [2]
  • PROTEIN CELL [1]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 6K X 4K [3]

External links

  • AlphaFold DB [3]
  • Complex Portal [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
  • Gene Ontology [2]
  • InterPro [2]
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EMD-64640
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Cryo-EM structure of the nucleosome core particle with site-specific DNA-histone crosslinking
CryoEM
Release date: May 6, 2026
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 9uz7
Q-score: 0.464

Shan X, Ji G, Li J, Ren M, Ma J, Zhou Y, Li H, Zhou C

Protein Cell (2026) 17 pp. 476-482 [ Pubmed: 41206067 DOI: doi:10.1093/procel/pwaf094 ]

EMD-36148
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Human canonical 601 DNA nucleosome
CryoEM
Release date: May 15, 2024
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8jbx
Q-score: 0.43

Ding D, Pang MYH, Deng M, Nguyen TT, Liu Y, Sun X, Xu Z, Zhang Y, Zhai Y, Yan Y, Ishibashi T

Nucleic Acids Res (2024) 52 pp. 11612-11625 [ Pubmed: 39329259 DOI: doi:10.1093/nar/gkae825 ]

EMD-36158
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Human H2BFWTH100R nucleosome with 601 DNA
CryoEM
Release date: May 15, 2024
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8jcd
Q-score: 0.445

Ding D, Pang MYH, Deng M, Nguyen TT, Liu Y, Sun X, Xu Z, Zhang Y, Zhai Y, Yan Y, Ishibashi T

Nucleic Acids Res (2024) 52 pp. 11612-11625 [ Pubmed: 39329259 DOI: doi:10.1093/nar/gkae825 ]

Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • DNA [3]
  • Protein [3]

Organism

  • Synthetic construct [3]
  • Homo sapiens [3]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [3]

Model molecular weight

  • 100-250 kDa [3]

Release Date

  • 2026 [1]
  • 2024 [2]

Author by name

  • Deng M [2]
  • Ding D [2]
  • Ding DB [2]
  • Ishibashi T [2]
  • Liu Y [2]
  • Nguyen TT [2]
  • Pang MYH [2]
  • Sun X [2]
  • Xu Z [2]
  • Yan Y [2]
  • Zhai Y [2]
  • Zhang Y [2]
  • Ji G [1]
  • Ji GY [1]
  • Li H [1]
  • Li HT [1]
  • Li J [1]
  • Ma J [1]
  • Ren M [1]
  • Shan X [1]
  • Shan XJ [1]
  • Zhou C [1]
  • Zhou CZ [1]
  • Zhou Y [1]

Author by ORCID

  • Ishibashi T [2]
  • Yan Y [2]
  • Nguyen TT [2]
  • Zhai Y [2]
  • Ding D [2]
  • Pang MYH [2]
  • Li H [1]
  • Zhou C [1]

Journal

  • NUCLEIC ACIDS RES [2]
  • PROTEIN CELL [1]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 6K X 4K [3]

External links

  • AlphaFold DB [3]
  • Complex Portal [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
  • Gene Ontology [2]
  • InterPro [2]