Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Filter By

Current Database

  • EMDB [98]

Current status

  • REL [98]

Sample type

  • Cell [65]
  • Complex [23]
  • Protein [20]
  • Sample [10]
  • Cellular component [8]
  • DNA [5]
  • RNA [5]
  • Ligand [4]

Organism

  • Homo sapiens [93]
  • Mumps orthorubulavirus [4]
  • Synechococcus elongatus [2]

EM Method

  • Subtomogram averaging [45]
  • Tomography [37]
  • Single-particle [9]
  • Helical reconstruction [7]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [9]
  • ≥ 12Å and < 16Å [8]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [16]

Model molecular weight

  • 500-1000 kDa [4]
  • 2-5 MDa [1]

Release Date

  • 2025 [37]
  • 2024 [11]
  • 2023 [20]
  • 2022 [6]
  • 2021 [1]
  • 2020 [1]
  • 2019 [4]
  • 2018 [3]
  • 2017 [1]
  • 2016 [5]
  • 2015 [1]
  • 2014 [5]
  • 2006 [2]
  • 2004 [1]

Author by name

  • Guo Q [19]
  • Ji W [19]
  • Liao Z [18]
  • Lin J [18]
  • Meng L [18]
  • Wang X [18]
  • Wu Y [18]
  • Xing W [18]
  • Yichun W [18]
  • Zhang P [18]
  • Mahamid J [14]
  • Baumeister W [12]
  • Pfeffer S [12]
  • Borgeaud AC [10]
  • Foerster F [10]
  • Ganeva I [10]
  • Kukulski W [10]
  • Wilfling F [10]
  • Hyman AA [9]
  • Plitzko JM [9]
  • Fung HKH [8]
  • Muller CW [8]
  • Schulman BA [8]
  • Zagoriy I [8]
  • Alian A [7]
  • Dempsey N [7]
  • Frost A [7]
  • Glover J [7]
  • Iwasa J [7]
  • Lajoie D [7]
  • Lalonde MS [7]
  • Laughlin TG [7]
  • Martin-serrano J [7]
  • Mccullough J [7]
  • Nguyen HC [7]
  • Padilla-parra S [7]
  • Sadler JBA [7]
  • Starling T [7]
  • Sundquist WI [7]
  • Talledge N [7]
  • Ullman KS [7]
  • Ventimiglia LN [7]
  • Wenzel D [7]
  • Hoffmann PC [6]
  • Li M [6]
  • Meijing L [6]
  • Tripathi-giesgen I [6]
  • Zhang X [6]
  • Abdussalam A [5]
  • Antico O [5]
  • Becker T [5]
  • Beckmann R [5]
  • Cuellar LK [5]
  • Danev R [5]
  • Dudek J [5]
  • Ehses K [5]
  • Fernandez-busnadiego R [5]
  • Forster F [5]
  • Gogala M [5]
  • Hyman A [5]
  • Ji G [5]
  • Jia X [5]
  • Kuhn-cuellar L [5]
  • Lang S [5]
  • Li SG [5]
  • Linxweiler J [5]
  • Lopez-alonso JP [5]
  • Muqit MMK [5]
  • Niu TX [5]
  • Otsuka S [5]
  • Plitzko J [5]
  • Schaffer M [5]
  • Schorr S [5]
  • Sun F [5]
  • Ubarretxena-belandia I [5]
  • Villa E [5]
  • Wang ZY [5]
  • Yin GL [5]
  • Zhang JG [5]
  • Zhang XY [5]
  • Zhu Y [5]
  • Zimmermann R [5]
  • Ader NR [4]
  • Becher I [4]
  • Beck M [4]
  • Bragulat-teixidor H [4]
  • Ching C [4]
  • Eugster Oegema C [4]
  • Fujii T [4]
  • Gygi SP [4]
  • Harada A [4]
  • Harper JW [4]
  • He Y [4]
  • Hirai S [4]
  • Ishihara K [4]
  • Jiang Y [4]
  • Kato J [4]
  • Kaufmann T [4]
  • Klein C [4]
  • Kraus F [4]

Author by ORCID

  • Lin J [18]
  • Ji W [18]
  • Meng L [18]
  • Wu Y [18]
  • Wang X [18]
  • Zhang P [18]
  • Guo Q [18]
  • Liao Z [18]
  • Pfeffer S [12]
  • Kukulski W [10]
  • Wilfling F [10]
  • Borgeaud AC [10]
  • Plitzko JM [9]
  • Fung HKH [8]
  • Schulman BA [8]
  • Muller CW [8]
  • Zagoriy I [8]
  • Mccullough J [7]
  • Laughlin TG [7]
  • Sundquist WI [7]
  • Wenzel D [7]
  • Talledge N [7]
  • Iwasa J [7]
  • Nguyen HC [7]
  • Martin-serrano J [7]
  • Alian A [7]
  • Frost A [7]
  • Ullman KS [7]
  • Li M [6]
  • Tripathi-giesgen I [6]
  • Schaffer M [5]
  • Foerster F [5]
  • Forster F [5]
  • Hyman AA [5]
  • Otsuka S [5]
  • Villa E [5]
  • Kujirai T [4]
  • Lemmin T [4]
  • Wang C [4]
  • Ohkawa Y [4]
  • Wu L [4]
  • Mahamid J [4]
  • Kurumizaka H [4]
  • Gygi SP [4]
  • Tait SWG [4]
  • Ader NR [4]
  • Jiang Y [4]
  • Youle RJ [4]
  • Riley JS [4]
  • Kaufmann T [4]
  • Yamaguchi Y [4]
  • Klein C [4]
  • Maehara K [4]
  • Kraus F [4]
  • Paulo JA [4]
  • He Y [4]
  • Takizawa Y [4]
  • Harper JW [4]
  • Negishi L [4]
  • Beck M [4]
  • Ishihara K [4]
  • Ross-kaschitza D [4]
  • Ganeva I [4]
  • Hoffmann PC [4]
  • Bragulat-teixidor H [4]
  • Szucs GM [4]
  • Harada A [4]
  • Ellenberg J [3]
  • Hagen WJH [3]
  • Pilhofer M [3]
  • Cai S [3]
  • Gan L [3]
  • Bieber A [2]
  • Jen A [2]
  • Llorca O [2]
  • Filbeck S [2]
  • Anderson BJ [2]
  • Gasparoli FM [2]
  • Hampoelz B [2]
  • Baymukhametov TN [2]
  • Farese R [2]
  • Chesnokov YM [2]
  • Babenko A [2]
  • Coon JJ [2]
  • Spagnolo L [2]
  • Cuylen-haering S [2]
  • Overmyer KA [2]
  • Gruss OJ [2]
  • Schiebel E [2]
  • Wurtz M [2]
  • Smith IR [2]
  • Capitanio C [2]
  • Lee C [2]
  • Hofer FW [2]
  • Pearl LH [2]
  • Salo VT [2]
  • Klumpe S [2]
  • Vermeulen BJA [2]
  • Goetz SK [2]
  • Swarup S [2]

Journal

  • SCI ADV [20]
  • NAT COMMUN [15]
  • TO BE PUBLISHED [14]
  • NAT METHODS [8]
  • ELIFE [6]
  • EMBO REP [6]
  • PNAS [6]
  • SCIENCE [6]
  • CELL [4]
  • MOL BIOL CELL [3]
  • BIORXIV [2]
  • CELL REP [2]
  • NAT STRUCT MOL BIOL [2]
  • NATURE [2]
  • NUCLEIC ACIDS RES [2]
  • NAT CELL BIOL [1]
  • STRUCTURE [1]

Software

  • RELION [20]
  • IMOD [17]
  • WARP [9]
  • CRYOSPARC [8]
  • DYNAMO [6]
  • AV3, TOM, PYTOM [5]
  • MATLAB [5]
  • ETOMO [4]
  • PYTOM [3]
  • EMAN [2]
  • PEET [2]
  • SITUS [2]
  • CHIMERA, COOT [1]
  • ETOMO, IMOD [1]
  • RELION, EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [53]
  • TFS KRIOS [32]
  • FEI TECNAI F20 [7]
  • JEOL 1230 [2]
  • FEI TECNAI 12 [1]
  • FEI TECNAI 20 [1]
  • FEI TECNAI F30 [1]
  • FEI/PHILIPS CM200FEG [1]

Electron Source

  • FIELD EMISSION GUN [94]
  • LAB6 [2]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K3 6K X 4K [25]
  • GATAN K2 SUMMIT 4K X 4K [24]
  • FEI FALCON IV 4K X 4K [10]
  • GATAN K2 QUANTUM 4K X 4K [9]
  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • FEI EAGLE 4K X 4K [5]
  • FEI FALCON I 4K X 4K [5]
  • OTHER [4]
  • FEI FALCON II 4K X 4K [3]
  • KODAK 4489 FILM [2]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • EMPIAR [13]
  • AlphaFold DB [12]
  • PDBe-Kb [12]
  • UniProt [12]
  • Complex Portal [10]
  • PDB [5]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • Gene Ontology [4]
  • InterPro [4]
  • Pfam [4]
Sort by: Download
Showing 1 - 10 of 98. Page 1 of 10
Display:
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Preview first 10
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EMD-55203
Download Map
3D View
Subtomogram average of the 39S mitochondrial ribosome from HeLa
Release date: Dec. 3, 2025
Resolution: 15.92 Å
EM Method: Subtomogram averaging

Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R

To Be Published

EMD-55204
Download Map
3D View
Subtomogram average of the 55S mitochondrial ribosome from HeLa
Release date: Dec. 3, 2025
Resolution: 22.89 Å
EM Method: Subtomogram averaging

Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R

To Be Published

EMD-55205
Download Map
3D View
Subtomogram average of the mtHsp60 singlering complex from HeLa
Release date: Dec. 3, 2025
Resolution: 13.67 Å
EM Method: Subtomogram averaging

Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R

To Be Published

EMD-55206
Download Map
3D View
Subtomogram average of the mtHsp60:mtHsp10 half-football complex from HeLa
Release date: Dec. 3, 2025
Resolution: 14.3 Å
EM Method: Subtomogram averaging

Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R

To Be Published

EMD-55207
Download Map
3D View
Subtomogram average of the mtHsp60:mtHsp10 Football complex from HeLa
Release date: Dec. 3, 2025
Resolution: 7.76 Å
EM Method: Subtomogram averaging

Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R

To Be Published

EMD-55210
Download Map
3D View
In situ cryo-ET tomogram of HeLa TMEM192-3xHA Control cell showcasing an endolysosomal structure.
Release date: Dec. 3, 2025
EM Method: Tomography

Kraus F, He Y, Jiang Y, Li D, Ambaw YA, Gasparoli FM, Paulo JA, Walther TC, Farese R, Gygi SP, Wilfling F, Harper JW

bioRxiv (2025) [ Pubmed: 41279717 DOI: doi:10.1101/2025.10.08.681047 ]

EMD-55211
Download Map
3D View
In situ cryo-ET tomogram of HeLa TMEM192-3xHA ASAH1-/- cell showcasing an endolysosomal structure
Release date: Dec. 3, 2025
EM Method: Tomography

Kraus F, He Y, Jiang Y, Li D, Ambaw YA, Gasparoli FM, Paulo JA, Walther TC, Farese R, Gygi SP, Wilfling F, Harper JW

bioRxiv (2025) [ Pubmed: 41279717 DOI: doi:10.1101/2025.10.08.681047 ]

EMD-54278
Download Map
3D View
Electron tomogram of resin-embedded, apoptosis-induced HeLa cell expressing Apaf1-GFP
Release date: Sept. 10, 2025
EM Method: Tomography

Borgeaud AC, Ganeva I, Klein C, Stooss A, Ross-Kaschitza D, Wu L, Riley JS, Tait SWG, Lemmin T, Kaufmann T, Kukulski W

Nat Commun (2025) 16 pp. 9429-9429 [ DOI: doi:10.1038/s41467-025-64478-9 Pubmed: 41136486 ]

EMD-54279
Download Map
3D View
Cryo-electron tomogram of apoptosis-induced HeLa cell expressing Apaf1-GFP
Release date: Sept. 10, 2025
EM Method: Tomography

Borgeaud AC, Ganeva I, Klein C, Stooss A, Ross-Kaschitza D, Wu L, Riley JS, Tait SWG, Lemmin T, Kaufmann T, Kukulski W

Nat Commun (2025) 16 pp. 9429-9429 [ DOI: doi:10.1038/s41467-025-64478-9 Pubmed: 41136486 ]

EMD-54280
Download Map
3D View
Cryo-electron tomogram of apoptosis-induced HeLa cell expressing Apaf1-SNAP
Release date: Sept. 10, 2025
EM Method: Tomography

Borgeaud AC, Ganeva I, Klein C, Stooss A, Ross-Kaschitza D, Wu L, Riley JS, Tait SWG, Lemmin T, Kaufmann T, Kukulski W

Nat Commun (2025) 16 pp. 9429-9429 [ DOI: doi:10.1038/s41467-025-64478-9 Pubmed: 41136486 ]

Sort by: Download
Showing 1 - 10 of 98. Page 1 of 10
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [98]

Current status

  • REL [98]

Sample type

  • Cell [65]
  • Complex [23]
  • Protein [20]
  • Sample [10]
  • Cellular component [8]
  • DNA [5]
  • RNA [5]
  • Ligand [4]

Organism

  • Homo sapiens [93]
  • Mumps orthorubulavirus [4]
  • Synechococcus elongatus [2]

EM Method

  • Subtomogram averaging [45]
  • Tomography [37]
  • Single-particle [9]
  • Helical reconstruction [7]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [9]
  • ≥ 12Å and < 16Å [8]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [16]

Model molecular weight

  • 500-1000 kDa [4]
  • 2-5 MDa [1]

Release Date

  • 2025 [37]
  • 2024 [11]
  • 2023 [20]
  • 2022 [6]
  • 2021 [1]
  • 2020 [1]
  • 2019 [4]
  • 2018 [3]
  • 2017 [1]
  • 2016 [5]
  • 2015 [1]
  • 2014 [5]
  • 2006 [2]
  • 2004 [1]

Author by name

  • Guo Q [19]
  • Ji W [19]
  • Liao Z [18]
  • Lin J [18]
  • Meng L [18]
  • Wang X [18]
  • Wu Y [18]
  • Xing W [18]
  • Yichun W [18]
  • Zhang P [18]
  • Mahamid J [14]
  • Baumeister W [12]
  • Pfeffer S [12]
  • Borgeaud AC [10]
  • Foerster F [10]
  • Ganeva I [10]
  • Kukulski W [10]
  • Wilfling F [10]
  • Hyman AA [9]
  • Plitzko JM [9]
  • Fung HKH [8]
  • Muller CW [8]
  • Schulman BA [8]
  • Zagoriy I [8]
  • Alian A [7]
  • Dempsey N [7]
  • Frost A [7]
  • Glover J [7]
  • Iwasa J [7]
  • Lajoie D [7]
  • Lalonde MS [7]
  • Laughlin TG [7]
  • Martin-serrano J [7]
  • Mccullough J [7]
  • Nguyen HC [7]
  • Padilla-parra S [7]
  • Sadler JBA [7]
  • Starling T [7]
  • Sundquist WI [7]
  • Talledge N [7]
  • Ullman KS [7]
  • Ventimiglia LN [7]
  • Wenzel D [7]
  • Hoffmann PC [6]
  • Li M [6]
  • Meijing L [6]
  • Tripathi-giesgen I [6]
  • Zhang X [6]
  • Abdussalam A [5]
  • Antico O [5]
  • Becker T [5]
  • Beckmann R [5]
  • Cuellar LK [5]
  • Danev R [5]
  • Dudek J [5]
  • Ehses K [5]
  • Fernandez-busnadiego R [5]
  • Forster F [5]
  • Gogala M [5]
  • Hyman A [5]
  • Ji G [5]
  • Jia X [5]
  • Kuhn-cuellar L [5]
  • Lang S [5]
  • Li SG [5]
  • Linxweiler J [5]
  • Lopez-alonso JP [5]
  • Muqit MMK [5]
  • Niu TX [5]
  • Otsuka S [5]
  • Plitzko J [5]
  • Schaffer M [5]
  • Schorr S [5]
  • Sun F [5]
  • Ubarretxena-belandia I [5]
  • Villa E [5]
  • Wang ZY [5]
  • Yin GL [5]
  • Zhang JG [5]
  • Zhang XY [5]
  • Zhu Y [5]
  • Zimmermann R [5]
  • Ader NR [4]
  • Becher I [4]
  • Beck M [4]
  • Bragulat-teixidor H [4]
  • Ching C [4]
  • Eugster Oegema C [4]
  • Fujii T [4]
  • Gygi SP [4]
  • Harada A [4]
  • Harper JW [4]
  • He Y [4]
  • Hirai S [4]
  • Ishihara K [4]
  • Jiang Y [4]
  • Kato J [4]
  • Kaufmann T [4]
  • Klein C [4]
  • Kraus F [4]

Author by ORCID

  • Lin J [18]
  • Ji W [18]
  • Meng L [18]
  • Wu Y [18]
  • Wang X [18]
  • Zhang P [18]
  • Guo Q [18]
  • Liao Z [18]
  • Pfeffer S [12]
  • Kukulski W [10]
  • Wilfling F [10]
  • Borgeaud AC [10]
  • Plitzko JM [9]
  • Fung HKH [8]
  • Schulman BA [8]
  • Muller CW [8]
  • Zagoriy I [8]
  • Mccullough J [7]
  • Laughlin TG [7]
  • Sundquist WI [7]
  • Wenzel D [7]
  • Talledge N [7]
  • Iwasa J [7]
  • Nguyen HC [7]
  • Martin-serrano J [7]
  • Alian A [7]
  • Frost A [7]
  • Ullman KS [7]
  • Li M [6]
  • Tripathi-giesgen I [6]
  • Schaffer M [5]
  • Foerster F [5]
  • Forster F [5]
  • Hyman AA [5]
  • Otsuka S [5]
  • Villa E [5]
  • Kujirai T [4]
  • Lemmin T [4]
  • Wang C [4]
  • Ohkawa Y [4]
  • Wu L [4]
  • Mahamid J [4]
  • Kurumizaka H [4]
  • Gygi SP [4]
  • Tait SWG [4]
  • Ader NR [4]
  • Jiang Y [4]
  • Youle RJ [4]
  • Riley JS [4]
  • Kaufmann T [4]
  • Yamaguchi Y [4]
  • Klein C [4]
  • Maehara K [4]
  • Kraus F [4]
  • Paulo JA [4]
  • He Y [4]
  • Takizawa Y [4]
  • Harper JW [4]
  • Negishi L [4]
  • Beck M [4]
  • Ishihara K [4]
  • Ross-kaschitza D [4]
  • Ganeva I [4]
  • Hoffmann PC [4]
  • Bragulat-teixidor H [4]
  • Szucs GM [4]
  • Harada A [4]
  • Ellenberg J [3]
  • Hagen WJH [3]
  • Pilhofer M [3]
  • Cai S [3]
  • Gan L [3]
  • Bieber A [2]
  • Jen A [2]
  • Llorca O [2]
  • Filbeck S [2]
  • Anderson BJ [2]
  • Gasparoli FM [2]
  • Hampoelz B [2]
  • Baymukhametov TN [2]
  • Farese R [2]
  • Chesnokov YM [2]
  • Babenko A [2]
  • Coon JJ [2]
  • Spagnolo L [2]
  • Cuylen-haering S [2]
  • Overmyer KA [2]
  • Gruss OJ [2]
  • Schiebel E [2]
  • Wurtz M [2]
  • Smith IR [2]
  • Capitanio C [2]
  • Lee C [2]
  • Hofer FW [2]
  • Pearl LH [2]
  • Salo VT [2]
  • Klumpe S [2]
  • Vermeulen BJA [2]
  • Goetz SK [2]
  • Swarup S [2]

Journal

  • SCI ADV [20]
  • NAT COMMUN [15]
  • TO BE PUBLISHED [14]
  • NAT METHODS [8]
  • ELIFE [6]
  • EMBO REP [6]
  • PNAS [6]
  • SCIENCE [6]
  • CELL [4]
  • MOL BIOL CELL [3]
  • BIORXIV [2]
  • CELL REP [2]
  • NAT STRUCT MOL BIOL [2]
  • NATURE [2]
  • NUCLEIC ACIDS RES [2]
  • NAT CELL BIOL [1]
  • STRUCTURE [1]

Software

  • RELION [20]
  • IMOD [17]
  • WARP [9]
  • CRYOSPARC [8]
  • DYNAMO [6]
  • AV3, TOM, PYTOM [5]
  • MATLAB [5]
  • ETOMO [4]
  • PYTOM [3]
  • EMAN [2]
  • PEET [2]
  • SITUS [2]
  • CHIMERA, COOT [1]
  • ETOMO, IMOD [1]
  • RELION, EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [53]
  • TFS KRIOS [32]
  • FEI TECNAI F20 [7]
  • JEOL 1230 [2]
  • FEI TECNAI 12 [1]
  • FEI TECNAI 20 [1]
  • FEI TECNAI F30 [1]
  • FEI/PHILIPS CM200FEG [1]

Electron Source

  • FIELD EMISSION GUN [94]
  • LAB6 [2]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K3 6K X 4K [25]
  • GATAN K2 SUMMIT 4K X 4K [24]
  • FEI FALCON IV 4K X 4K [10]
  • GATAN K2 QUANTUM 4K X 4K [9]
  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • FEI EAGLE 4K X 4K [5]
  • FEI FALCON I 4K X 4K [5]
  • OTHER [4]
  • FEI FALCON II 4K X 4K [3]
  • KODAK 4489 FILM [2]
  • GATAN ULTRASCAN 4000 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • EMPIAR [13]
  • AlphaFold DB [12]
  • PDBe-Kb [12]
  • UniProt [12]
  • Complex Portal [10]
  • PDB [5]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • Gene Ontology [4]
  • InterPro [4]
  • Pfam [4]