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sample_name:"Contractile injection system in marine bacterium Algoriphagus machipongonensis"

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Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Complex [19]
  • Protein [8]

Organism

  • Algoriphagus machipongonensis [19]

EM Method

  • Single-particle [13]
  • Subtomogram averaging [3]
  • Helical reconstruction [2]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 30Å [3]

Model molecular weight

  • 500-1000 kDa [2]
  • 1-2 MDa [4]
  • 2-5 MDa [2]

Release Date

  • 2026 [10]
  • 2022 [9]

Author by name

  • Ericson CF [19]
  • Pilhofer M [19]
  • Xu J [19]
  • Toenshoff ER [10]
  • Eisenstein F [9]
  • Ericson C [9]
  • Feldmuller M [9]
  • King N [9]
  • Lien YW [9]
  • Rutaganira FUN [9]
  • Feldmueller M [4]

Author by ORCID

  • Ericson CF [18]
  • Pilhofer M [18]
  • Xu J [18]
  • Rutaganira FUN [9]
  • Eisenstein F [9]
  • Feldmuller M [9]
  • Toenshoff ER [9]
  • Lien YW [9]

Journal

  • NAT COMMUN [9]
  • NAT MICROBIOL [9]
  • TO BE PUBLISHED [1]

Software

  • RELION [9]
  • DYNAMO [2]
  • IMOD [1]

Microscope

  • TFS KRIOS [10]
  • FEI TITAN KRIOS [9]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K3 6K X 4K [19]

External links

  • PDB [19]
  • AlphaFold DB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Pfam [6]
  • InterPro [5]
  • Gene Ontology [4]
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Showing 1 - 10 of 19. Page 1 of 2
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EMD-66211
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3D View
CryoEM structure of baseplate iris structure in the contracted AlgoCIS
CryoEM
Release date: May 6, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9wsz
Q-score: 0.352

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-66212
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3D View
CryoEM structure of one tail-fiber connected to the baseplate wedge in the contracted AlgoCIS
CryoEM
Release date: May 6, 2026
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9wt0
Q-score: 0.377

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-66213
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3D View
CryoEM structure of cap module in the contracted AlgoCIS
CryoEM
Release date: May 6, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9wt1
Q-score: 0.399

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-66214
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CryoEM structure of the proximal sheath layer connected to the baseplate wedge in the contracted AlgoCIS
CryoEM
Release date: May 6, 2026
Resolution: 3.4 Å
EM Method: Single-particle

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-69920
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3D View
CryoEM structure of the baseplate iris in the post-firing AlgoCIS upon low-pH treatment
CryoEM
Release date: May 6, 2026
Resolution: 3.7 Å
EM Method: Single-particle

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-69921
Download Map
3D View
CryoEM structure of the baseplate iris in the pre-firing non-contractile AlgoCIS upon low-pH treatment
CryoEM
Release date: May 6, 2026
Resolution: 5.4 Å
EM Method: Single-particle

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-69922
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3D View
CryoEM structure of the baseplate iris with partial open cage in the non-contractile AlgoCIS upon low-pH treatment
CryoEM
Release date: May 6, 2026
Resolution: 6.6 Å
EM Method: Single-particle

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-69923
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3D View
Sub-tomogram average of pre-firing AlgoCIS on the E. pacifica surface.
CryoEM
Release date: May 6, 2026
Resolution: 60.0 Å
EM Method: Subtomogram averaging

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

EMD-69924
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3D View
Sub-tomogram average of post-firing AlgoCIS on the E. pacifica surface.
CryoEM
Release date: May 6, 2026
Resolution: 60.0 Å
EM Method: Subtomogram averaging

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

To Be Published

EMD-69925
Download Map
3D View
Cryo-tomogram of purified AlgoCIS incubated with E. pacifica.
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Xu J, Ericson CF, Toenshoff ER, Pilhofer M

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72240-y Pubmed: 42031783 ]

Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Complex [19]
  • Protein [8]

Organism

  • Algoriphagus machipongonensis [19]

EM Method

  • Single-particle [13]
  • Subtomogram averaging [3]
  • Helical reconstruction [2]
  • Tomography [1]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 30Å [3]

Model molecular weight

  • 500-1000 kDa [2]
  • 1-2 MDa [4]
  • 2-5 MDa [2]

Release Date

  • 2026 [10]
  • 2022 [9]

Author by name

  • Ericson CF [19]
  • Pilhofer M [19]
  • Xu J [19]
  • Toenshoff ER [10]
  • Eisenstein F [9]
  • Ericson C [9]
  • Feldmuller M [9]
  • King N [9]
  • Lien YW [9]
  • Rutaganira FUN [9]
  • Feldmueller M [4]

Author by ORCID

  • Ericson CF [18]
  • Pilhofer M [18]
  • Xu J [18]
  • Rutaganira FUN [9]
  • Eisenstein F [9]
  • Feldmuller M [9]
  • Toenshoff ER [9]
  • Lien YW [9]

Journal

  • NAT COMMUN [9]
  • NAT MICROBIOL [9]
  • TO BE PUBLISHED [1]

Software

  • RELION [9]
  • DYNAMO [2]
  • IMOD [1]

Microscope

  • TFS KRIOS [10]
  • FEI TITAN KRIOS [9]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K3 6K X 4K [19]

External links

  • PDB [19]
  • AlphaFold DB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Pfam [6]
  • InterPro [5]
  • Gene Ontology [4]