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sample_name:"50S E. coli ribosome"

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Current Database

  • EMDB [28]

Current status

  • REL [28]

Sample type

  • Complex [28]
  • Ligand [27]
  • Protein [27]
  • RNA [27]

Organism

  • Escherichia coli [28]
  • Streptomyces virginiae [3]
  • Escherichia coli [1]

EM Method

  • Single-particle [28]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [26]

Model molecular weight

  • 1-2 MDa [27]

Release Date

  • 2023 [17]
  • 2022 [1]
  • 2020 [10]

Author by name

  • Fraser JS [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Biel JT [10]
  • Borrelli K [10]
  • Brilot AF [10]
  • Chaires HA [10]
  • Chesneau O [10]
  • Chow D [10]
  • Jacobson MP [10]
  • Ji K [10]
  • Muhle E [10]
  • Murray B [10]
  • Park JE [10]
  • Shinabarger D [10]
  • Tran AA [10]
  • Wang R [10]
  • Wolfe C [10]
  • Zhang N [10]
  • Van Zundert G [10]
  • Yeon SK [6]
  • Boyce JH [3]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Edmonson Q [2]

Author by ORCID

  • Fraser JS [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Jacobson MP [10]
  • Chaires HA [10]
  • Muhle E [10]
  • Wang R [10]
  • Yeon SK [6]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Boyce JH [3]

Journal

  • TO BE PUBLISHED [18]
  • NATURE [10]

Microscope

  • FEI TITAN KRIOS [27]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [28]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [18]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • GATAN K3 6K X 4K [1]

External links

  • EMPIAR [28]
  • PDB [28]
  • AlphaFold DB [27]
  • Gene Ontology [27]
  • InterPro [27]
  • PDBe-Kb [27]
  • Pfam [27]
  • UniProt [27]
  • ChEMBL [7]
  • ChEBI [6]
  • DrugBank [6]
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Showing 1 - 10 of 28. Page 1 of 3
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EMD-27852
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3D View
Raw data
EMPIAR-11150
E. coli 50S ribosome bound to compound streptogramin A analog 3142
CryoEM
Release date: June 28, 2023
Resolution: 1.91 Å
EM Method: Single-particle
Fitted PDBs: 8e30
Q-score: 0.629

Li Q, Pellegrino J, Lee DJ, Fraser JS, Seiple IB

To Be Published

EMD-27854
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3D View
Raw data
EMPIAR-11146
E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1
CryoEM
Release date: June 28, 2023
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8e32
Q-score: 0.609

Takahashi Y, Pellegrino J, Lee DJ, Fraser JS, Seiple IB

To Be Published

EMD-27855
Download Map
3D View
Raw data
EMPIAR-11147
E. coli 50S ribosome bound to compound streptogramin analog SAB001
CryoEM
Release date: June 28, 2023
Resolution: 2.23 Å
EM Method: Single-particle
Fitted PDBs: 8e33
Q-score: 0.602

Takahashi Y, Pellegrino J, Lee DJ, Fraser JS, Seiple IB

To Be Published

EMD-27857
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Raw data
EMPIAR-11148
E. coli 50S ribosome bound to compound SAB002
CryoEM
Release date: June 28, 2023
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 8e35
Q-score: 0.569

Takahashi Y, Pellegrino J, Lee DJ, Fraser JS, Seiple IB

To Be Published

EMD-27858
Download Map
3D View
Raw data
EMPIAR-11151
E. coli 50S ribosome bound to compound streptogramin A analog 3146
CryoEM
Release date: June 28, 2023
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 8e36
Q-score: 0.57

Li Q, Pellegrino J, Lee DJ, Seiple IB, Fraser JS

To Be Published

EMD-27867
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3D View
Raw data
EMPIAR-11152
E. coli 50S ribosome bound to D-linker solithromycin conjugate
CryoEM
Release date: June 28, 2023
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8e3l
Q-score: 0.601

Boyce JH, Pellegrino J, Lee DJ, Ecker AK, Seiple IB, Fraser JS

To Be Published

EMD-27868
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3D View
Raw data
EMPIAR-11153
E. coli 50S ribosome bound to L-linker solithromycin conjugate
CryoEM
Release date: June 28, 2023
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 8e3m
Q-score: 0.604

Boyce JH, Pellegrino J, Lee DJ, Ecker AK, Seiple IB, Fraser JS

To Be Published

EMD-27869
Download Map
3D View
Raw data
EMPIAR-11154
E. coli 50S ribosome bound to solithromycin and VM1
CryoEM
Release date: June 28, 2023
Resolution: 1.99 Å
EM Method: Single-particle
Fitted PDBs: 8e3o
Q-score: 0.618

Boyce JH, Pellegrino J, Lee DJ, Ecker AK, Seiple IB, Fraser JS

To Be Published

EMD-27876
Download Map
3D View
Raw data
EMPIAR-11164
E. coli 50S ribosome bound to tiamulin and VS1
CryoEM
Release date: June 28, 2023
Resolution: 2.13 Å
EM Method: Single-particle
Fitted PDBs: 8e41
Q-score: 0.611

Edmonson Q, Pellegrino J, Lee DJ, Seiple IB, Fraser JS

To Be Published

EMD-27877
Download Map
3D View
Raw data
EMPIAR-11165
E. coli 50S ribosome bound to tiamulin and azithromycin
CryoEM
Release date: June 28, 2023
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 8e42
Q-score: 0.604

Edmonson Q, Pellegrino J, Lee DJ, Seiple IB, Fraser JS

To Be Published

Sort by: Download
Showing 1 - 10 of 28. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [28]

Current status

  • REL [28]

Sample type

  • Complex [28]
  • Ligand [27]
  • Protein [27]
  • RNA [27]

Organism

  • Escherichia coli [28]
  • Streptomyces virginiae [3]
  • Escherichia coli [1]

EM Method

  • Single-particle [28]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [26]

Model molecular weight

  • 1-2 MDa [27]

Release Date

  • 2023 [17]
  • 2022 [1]
  • 2020 [10]

Author by name

  • Fraser JS [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Biel JT [10]
  • Borrelli K [10]
  • Brilot AF [10]
  • Chaires HA [10]
  • Chesneau O [10]
  • Chow D [10]
  • Jacobson MP [10]
  • Ji K [10]
  • Muhle E [10]
  • Murray B [10]
  • Park JE [10]
  • Shinabarger D [10]
  • Tran AA [10]
  • Wang R [10]
  • Wolfe C [10]
  • Zhang N [10]
  • Van Zundert G [10]
  • Yeon SK [6]
  • Boyce JH [3]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Edmonson Q [2]

Author by ORCID

  • Fraser JS [28]
  • Lee DJ [28]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Jacobson MP [10]
  • Chaires HA [10]
  • Muhle E [10]
  • Wang R [10]
  • Yeon SK [6]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Boyce JH [3]

Journal

  • TO BE PUBLISHED [18]
  • NATURE [10]

Microscope

  • FEI TITAN KRIOS [27]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [28]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [18]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • GATAN K3 6K X 4K [1]

External links

  • EMPIAR [28]
  • PDB [28]
  • AlphaFold DB [27]
  • Gene Ontology [27]
  • InterPro [27]
  • PDBe-Kb [27]
  • Pfam [27]
  • UniProt [27]
  • ChEMBL [7]
  • ChEBI [6]
  • DrugBank [6]