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sample_name:"SPARTA complex with gRNA/tDNA"

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Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Complex [5]
  • Protein [5]
  • DNA [1]
  • Ligand [1]
  • RNA [1]

Organism

  • Thermoflavifilum thermophilum [5]
  • Synthetic construct [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 3Å and < 4Å [5]

Model molecular weight

  • 500-1000 kDa [1]

Release Date

  • 2024 [5]

Author by name

  • Aggarwal AK [5]
  • Kottur J [5]
  • Malik R [5]

Author by ORCID

  • Malik R [5]
  • Kottur J [5]
  • Aggarwal AK [5]

Journal

  • NAT COMMUN [5]

Microscope

  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [5]

External links

  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDB [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]
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EMD-41945
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Locally refined symmetry based cryo-EM map of the dimer of the SPARTA oligomer with guide RNA and target DNA
Release date: June 12, 2024
Resolution: 3.15 Å
EM Method: Single-particle

Kottur J, Malik R, Aggarwal AK

Nat Commun (2024) 15 pp. 4852-4852 [ DOI: doi:10.1038/s41467-024-49271-4 Pubmed: 38844755 ]

EMD-41947
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Locally refined symmetry based cryo-EM map of the second dimer of the SPARTA oligomer with guide RNA and target DNA
Release date: June 12, 2024
Resolution: 3.17 Å
EM Method: Single-particle

Kottur J, Malik R, Aggarwal AK

Nat Commun (2024) 15 pp. 4852-4852 [ DOI: doi:10.1038/s41467-024-49271-4 Pubmed: 38844755 ]

EMD-41948
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Focused refined cryo-EM map of the TIR domains of the SPARTA oligomer
Release date: June 12, 2024
Resolution: 3.37 Å
EM Method: Single-particle

Kottur J, Malik R, Aggarwal AK

Nat Commun (2024) 15 pp. 4852-4852 [ DOI: doi:10.1038/s41467-024-49271-4 Pubmed: 38844755 ]

EMD-41959
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3D View
Original Cryo-EM map of the SPARTA oligomer with guide RNA and target DNA
Release date: June 12, 2024
Resolution: 3.35 Å
EM Method: Single-particle

Kottur J, Malik R, Aggarwal AK

Nat Commun (2024) 15 pp. 4852-4852 [ DOI: doi:10.1038/s41467-024-49271-4 Pubmed: 38844755 ]

EMD-41966
Composite map
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3D View
Cryo-EM structure of the SPARTA oligomer with guide RNA and target DNA
Release date: June 12, 2024
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8u72
Q-score: 0.533

Kottur J, Malik R, Aggarwal AK

Nat Commun (2024) 15 pp. 4852-4852 [ DOI: doi:10.1038/s41467-024-49271-4 Pubmed: 38844755 ]

Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Complex [5]
  • Protein [5]
  • DNA [1]
  • Ligand [1]
  • RNA [1]

Organism

  • Thermoflavifilum thermophilum [5]
  • Synthetic construct [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 3Å and < 4Å [5]

Model molecular weight

  • 500-1000 kDa [1]

Release Date

  • 2024 [5]

Author by name

  • Aggarwal AK [5]
  • Kottur J [5]
  • Malik R [5]

Author by ORCID

  • Malik R [5]
  • Kottur J [5]
  • Aggarwal AK [5]

Journal

  • NAT COMMUN [5]

Microscope

  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [5]

External links

  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDB [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]