Electron Microscopy Data Bank

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primary_citation_author:"Zhang D"

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Current Database

Current status

Sample type

Organism

Homo sapiens [49]
Mus musculus [34]
Rattus norvegicus [31]
Enterovirus b [28]
Severe acute respiratory syndrome coronavirus [13]
Synthetic construct [11]
Saccharomyces cerevisiae [11]
Caenorhabditis elegans [10]
Escherichia coli [9]
(no species) [8]
Arabidopsis thaliana [7]
Saccharomyces cerevisiae [7]
(no species) [6]
Enterovirus a [5]
Influenza a virus [4]
Enterovirus a [4]
(no species) [4]
Odocoileus virginianus [4]
Streptococcus agalactiae [3]
Wuhan asiatic toad influenza virus [3]
Oryza sativa [3]
Bos taurus [3]
Streptomyces coelicolor [2]
Enterococcus faecalis [2]
Streptomyces coelicolor [2]
Wuhan spiny eel influenza virus [2]
Severe acute respiratory syndrome coronavirus [2]
Tetrahymena thermophila [2]
Spinacia oleracea [2]
Bacillus cereus [2]
Enterococcus faecalis [2]
Acyrthosiphon pisum [2]
Escherichia coli [2]
Fusobacterium nucleatum [2]
Canis lupus [2]
Sus scrofa [2]
Lama glama [2]
Odocoileus virginianus [2]
Unidentified influenza virus [1]
Synechococcus elongatus [1]
Human immunodeficiency virus 1 [1]
Ligilactobacillus salivarius [1]
Coronavirus hku15 [1]
Aquifex aeolicus [1]
Ribosome display vector prdv [1]
Synechococcus elongatus [1]
Gossypium hirsutum [1]
Alphacoronavirus 1 [1]
Clostridium botulinum [1]
Recovirus a [1]
Aquifex aeolicus [1]
(no species) [1]
Lutzomyia longipalpis [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang D [218]
Zhang J [51]
Li S [47]
Chen Z [39]
Wu Y [39]
Yu H [39]
Xu L [38]
Cheng T [37]
He M [37]
Huang Y [37]
Jiang Y [37]
Luo W [37]
Que Y [37]
Sun H [37]
Xia N [37]
Yang H [37]
Yin Z [37]
Zheng Q [37]
Zhu R [37]
Zhou Z [32]
Greger IH [31]
Zhao H [31]
Zhou L [31]
Gu Y [30]
Wang Q [29]
Huang Q [28]
Yin P [27]
Guan Z [26]
Cais O [25]
Gao GF [24]
Liu L [24]
Guan ZY [23]
Li T [23]
Han J [22]
Ho H [22]
Kong Z [22]
Krieger JM [22]
Liu K [20]
Liu Y [19]
Zhang W [19]
Liu C [18]
Liu Z [17]
Qi J [17]
Wang L [17]
Wang Y [17]
Baradaran R [16]
Guo Y [16]
Ivica J [16]
Stockwell I [16]
Yamashita K [16]
Fang M [15]
Li H [15]
Watson JF [15]
Ye X [15]
Li L [14]
Liu J [14]
Yang X [14]
Zhang C [14]
Han P [13]
Xu Z [13]
Zhou X [13]
Cheng Y [12]
Li X [12]
Li Z [12]
Shi Y [12]
Tu Y [12]
Zhang R [12]
Zhu Y [12]
Chen X [11]
Greger I [11]
Li Y [11]
Sun F [11]
Wang X [11]
Xie Y [11]
Buzzard E [10]
Collinson I [10]
Daum B [10]
Deng W [10]
Gold VAM [10]
Gong T [10]
Huang D [10]
Huang Z [10]
Jia X [10]
Knapp-wilson A [10]
Kohegyi B [10]
Kohegyi BK [10]
Kuwabara PE [10]
Lai Y [10]
Lape R [10]
Luo Y [10]
Ma H [10]
Ma L [10]
Mclaren M [10]
Niu T [10]
Peng X [10]
Shaikh SA [10]
Shang S [10]
Shao B [10]
Su Z [10]
Sun J [10]

Author by ORCID

He M [37]
Zhu R [37]
Zheng Q [37]
Greger IH [31]
Yin Z [28]
Yin P [27]
Zhang D [24]
Ho H [22]
Gao GF [19]
Ivica J [16]
Yamashita K [16]
Baradaran R [16]
Zhang D [16]
Watson JF [15]
Wang Q [14]
Liu Z [14]
Guan Z [12]
Sun S [10]
Gong T [10]
Ying B [10]
Wu H [10]
Shao B [10]
Huang D [10]
White R [10]
Jia X [10]
Kuwabara PE [10]
Han P [10]
Knapp-wilson A [10]
Buzzard E [10]
Daum B [10]
Collinson I [10]
Zheng X [10]
Liu J [10]
Xie J [10]
Xu S [10]
Mclaren M [10]
Gold VAM [10]
Cheng Y [10]
Su Z [10]
Zhou X [10]
Qi J [10]
Wang L [10]
Ma H [10]
Luo Y [10]
Zhang C [10]
Peng X [10]
Zhang D [10]
Liu Y [10]
Shang S [10]
Tu Y [10]
Zou J [10]
Huang Z [10]
Wei Y [10]
Xu L [9]
Luo W [9]
Cheng T [9]
Li S [9]
Zhang J [9]
Xia N [9]
Jiang Y [9]
Huang Y [9]
Ma L [8]
Guan Z [8]
Li H [7]
Yan J [7]
Bai L [7]
Yin H [6]
Krieger JM [6]
Li Z [6]
Li K [6]
Li S [6]
Liu K [6]
Huang H [6]
Shaikh SA [6]
Song Q [6]
Xia C [6]
Niu S [6]
Cui F [6]
Zhang D [6]
Ding Z [6]
Peng L [6]
Xiao P [6]
Munoz-hernandez H [6]
Herguedas B [6]
Wieczorek M [6]
Gao N [6]
Yuan Z [6]
O'donnell ME [5]
Sun F [5]
Gao F [5]
Su C [5]
Zou T [5]
Matthews PM [5]
Zhang H [5]
Li X [5]
Zhang Y [4]
Lin H [4]
Nakagawa T [4]
Zhang D [4]
Yi F [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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EMDB [216]
EMPIAR [5]

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EMD-52224

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3D View

ROCK2 bound with TDI01

CryoEM

Release date: June 17, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9hjq
Q-score: 0.329

Hu Y, Yang B, Xiao C, Yang X, Zhang H, Yang P, Du X, Zhang G, Liang B, Bai N, Zhang D, Wu D, Luo Q, Teng Y, Chen Y, Guo Z, Zhao C, Ye T, Chai D, Qi X, Zhong W, Chen J, Dong H, Gao J, He H, Chang J, Li X, Peng L, Rafii S, Friedman SL, Yi C, Cai Y, Zhao Y, Wang H, Wang C, Cao Z, Ding BS

Cell (2026) 189 pp. 2663-2683.e26 [ DOI: doi:10.1016/j.cell.2026.02.001 Pubmed: 41794026 ]

EMPIAR-13367

Release date: May 27, 2026
Dataset size: 530.9 GB
Experiment type: EMDB

Zhang D, Muñoz-Hernández H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

bioRxiv (2026) [ DOI: 10.64898/2026.02.24.703950 ]

Image sets:

Aligned micrographs

EMPIAR-13372

Release date: May 27, 2026
Dataset size: 88.9 GB
Experiment type: EMDB

Zhang D, Muñoz-Hernández H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

bioRxiv (2026) [ DOI: 10.64898/2026.02.24.703950 ]

Image sets:

Aligned micrographs

EMD-55425

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3D View

Cryo-EM reconstruction of the Kinesin KIF5A motor domain decorated GMPCPP microtubule

CryoEM

Release date: May 6, 2026
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9t17
Q-score: 0.568

Zhang D, Munoz-Hernandez H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

Acta Crystallogr D Struct Biol (2026) 82 pp. 411-420 [ DOI: doi:10.1107/S2059798326003062 Pubmed: 42044018 ]

EMD-55431

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Cryo-EM reconstruction of undecorated GDP microtubule

CryoEM

Release date: May 6, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9t1d
Q-score: 0.464

Zhang D, Munoz-Hernandez H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

Acta Crystallogr D Struct Biol (2026) 82 pp. 411-420 [ DOI: doi:10.1107/S2059798326003062 Pubmed: 42044018 ]

EMD-55440

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Raw data

Cryo-EM reconstruction of undecorated GDP microtubule 13-3

CryoEM

Release date: May 6, 2026
Resolution: 3.62 Å
EM Method: Single-particle

Zhang D, Munoz-Hernandez H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

Acta Crystallogr D Struct Biol (2026) 82 pp. 411-420 [ DOI: doi:10.1107/S2059798326003062 Pubmed: 42044018 ]

EMD-55444

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3D View

Raw data

Cryo-EM reconstruction of the Kinesin KIF5A motor domain decorated GMPCPP microtubule 14-3

CryoEM

Release date: May 6, 2026
Resolution: 4.16 Å
EM Method: Single-particle

Zhang D, Munoz-Hernandez H, Filipcik P, Sejwal K, Xu Y, Choi SR, Steinmetz MO, Wieczorek M

Acta Crystallogr D Struct Biol (2026) 82 pp. 411-420 [ DOI: doi:10.1107/S2059798326003062 Pubmed: 42044018 ]

EMD-67153

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LolCDE in complex with SMT-738_3

Composite map

CryoEM

Release date: March 18, 2026
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9xro
Q-score: 0.522

Li H, Zhu X, Zhang D, Duan X, Li J, Qu Y, Li D, Zhang Z, Dong H, Guo FB, Dong C

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-69411-2 Pubmed: 41663437 ]

EMD-65103

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Structure of a membrane-bound inositol phosphorylceramide synthase and ceramide complex

CryoEM

Release date: March 11, 2026
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9vj4
Q-score: 0.43

Chen J, Ke Y, Zhang M, Lin X, Hua Z, Zhang D, Hu X, Ding X, Li J, Yang P, Yu H

Nat Commun (2026) 17 [ Pubmed: 41708645 DOI: doi:10.1038/s41467-026-69777-3 ]

EMD-66750

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Structure of a membrane-bound inositol phosphorylceramide synthase and Aureobasidin A complex

CryoEM

Release date: March 11, 2026
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9xd0
Q-score: 0.437

Chen J, Ke Y, Zhang M, Lin X, Hua Z, Zhang D, Hu X, Ding X, Li J, Yang P, Yu H

Nat Commun (2026) 17 [ Pubmed: 41708645 DOI: doi:10.1038/s41467-026-69777-3 ]

Sort by: Download

Showing 1 - 10 of 221. Page 1 of 23

Display:

Statistics

Download

Select database:

EMDB [216]
EMPIAR [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [49]
Mus musculus [34]
Rattus norvegicus [31]
Enterovirus b [28]
Severe acute respiratory syndrome coronavirus [13]
Synthetic construct [11]
Saccharomyces cerevisiae [11]
Caenorhabditis elegans [10]
Escherichia coli [9]
(no species) [8]
Arabidopsis thaliana [7]
Saccharomyces cerevisiae [7]
(no species) [6]
Enterovirus a [5]
Influenza a virus [4]
Enterovirus a [4]
(no species) [4]
Odocoileus virginianus [4]
Streptococcus agalactiae [3]
Wuhan asiatic toad influenza virus [3]
Oryza sativa [3]
Bos taurus [3]
Streptomyces coelicolor [2]
Enterococcus faecalis [2]
Streptomyces coelicolor [2]
Wuhan spiny eel influenza virus [2]
Severe acute respiratory syndrome coronavirus [2]
Tetrahymena thermophila [2]
Spinacia oleracea [2]
Bacillus cereus [2]
Enterococcus faecalis [2]
Acyrthosiphon pisum [2]
Escherichia coli [2]
Fusobacterium nucleatum [2]
Canis lupus [2]
Sus scrofa [2]
Lama glama [2]
Odocoileus virginianus [2]
Unidentified influenza virus [1]
Synechococcus elongatus [1]
Human immunodeficiency virus 1 [1]
Ligilactobacillus salivarius [1]
Coronavirus hku15 [1]
Aquifex aeolicus [1]
Ribosome display vector prdv [1]
Synechococcus elongatus [1]
Gossypium hirsutum [1]
Alphacoronavirus 1 [1]
Clostridium botulinum [1]
Recovirus a [1]
Aquifex aeolicus [1]
(no species) [1]
Lutzomyia longipalpis [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang D [218]
Zhang J [51]
Li S [47]
Chen Z [39]
Wu Y [39]
Yu H [39]
Xu L [38]
Cheng T [37]
He M [37]
Huang Y [37]
Jiang Y [37]
Luo W [37]
Que Y [37]
Sun H [37]
Xia N [37]
Yang H [37]
Yin Z [37]
Zheng Q [37]
Zhu R [37]
Zhou Z [32]
Greger IH [31]
Zhao H [31]
Zhou L [31]
Gu Y [30]
Wang Q [29]
Huang Q [28]
Yin P [27]
Guan Z [26]
Cais O [25]
Gao GF [24]
Liu L [24]
Guan ZY [23]
Li T [23]
Han J [22]
Ho H [22]
Kong Z [22]
Krieger JM [22]
Liu K [20]
Liu Y [19]
Zhang W [19]
Liu C [18]
Liu Z [17]
Qi J [17]
Wang L [17]
Wang Y [17]
Baradaran R [16]
Guo Y [16]
Ivica J [16]
Stockwell I [16]
Yamashita K [16]
Fang M [15]
Li H [15]
Watson JF [15]
Ye X [15]
Li L [14]
Liu J [14]
Yang X [14]
Zhang C [14]
Han P [13]
Xu Z [13]
Zhou X [13]
Cheng Y [12]
Li X [12]
Li Z [12]
Shi Y [12]
Tu Y [12]
Zhang R [12]
Zhu Y [12]
Chen X [11]
Greger I [11]
Li Y [11]
Sun F [11]
Wang X [11]
Xie Y [11]
Buzzard E [10]
Collinson I [10]
Daum B [10]
Deng W [10]
Gold VAM [10]
Gong T [10]
Huang D [10]
Huang Z [10]
Jia X [10]
Knapp-wilson A [10]
Kohegyi B [10]
Kohegyi BK [10]
Kuwabara PE [10]
Lai Y [10]
Lape R [10]
Luo Y [10]
Ma H [10]
Ma L [10]
Mclaren M [10]
Niu T [10]
Peng X [10]
Shaikh SA [10]
Shang S [10]
Shao B [10]
Su Z [10]
Sun J [10]

Author by ORCID

He M [37]
Zhu R [37]
Zheng Q [37]
Greger IH [31]
Yin Z [28]
Yin P [27]
Zhang D [24]
Ho H [22]
Gao GF [19]
Ivica J [16]
Yamashita K [16]
Baradaran R [16]
Zhang D [16]
Watson JF [15]
Wang Q [14]
Liu Z [14]
Guan Z [12]
Sun S [10]
Gong T [10]
Ying B [10]
Wu H [10]
Shao B [10]
Huang D [10]
White R [10]
Jia X [10]
Kuwabara PE [10]
Han P [10]
Knapp-wilson A [10]
Buzzard E [10]
Daum B [10]
Collinson I [10]
Zheng X [10]
Liu J [10]
Xie J [10]
Xu S [10]
Mclaren M [10]
Gold VAM [10]
Cheng Y [10]
Su Z [10]
Zhou X [10]
Qi J [10]
Wang L [10]
Ma H [10]
Luo Y [10]
Zhang C [10]
Peng X [10]
Zhang D [10]
Liu Y [10]
Shang S [10]
Tu Y [10]
Zou J [10]
Huang Z [10]
Wei Y [10]
Xu L [9]
Luo W [9]
Cheng T [9]
Li S [9]
Zhang J [9]
Xia N [9]
Jiang Y [9]
Huang Y [9]
Ma L [8]
Guan Z [8]
Li H [7]
Yan J [7]
Bai L [7]
Yin H [6]
Krieger JM [6]
Li Z [6]
Li K [6]
Li S [6]
Liu K [6]
Huang H [6]
Shaikh SA [6]
Song Q [6]
Xia C [6]
Niu S [6]
Cui F [6]
Zhang D [6]
Ding Z [6]
Peng L [6]
Xiao P [6]
Munoz-hernandez H [6]
Herguedas B [6]
Wieczorek M [6]
Gao N [6]
Yuan Z [6]
O'donnell ME [5]
Sun F [5]
Gao F [5]
Su C [5]
Zou T [5]
Matthews PM [5]
Zhang H [5]
Li X [5]
Zhang Y [4]
Lin H [4]
Nakagawa T [4]
Zhang D [4]
Yi F [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links