Electron Microscopy Data Bank

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primary_citation_author:"Yu Z"

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Current Database

Current status

Sample type

Organism

Homo sapiens [205]
Mus musculus [43]
Synthetic construct [34]
Simplexvirus humanalpha1 [13]
Escherichia coli [11]
Saccharomyces cerevisiae [9]
Salmonella enterica [8]
Xenopus laevis [8]
Salmonella enterica [8]
Human herpesvirus 1 [7]
Acinetobacter phage ap205 [7]
Sus scrofa [7]
Rattus norvegicus [6]
Thermoplasma acidophilum [6]
Severe acute respiratory syndrome coronavirus [6]
Listeria monocytogenes [5]
Pseudomonas aeruginosa [5]
Chlamydomonas reinhardtii [5]
Oryza sativa [5]
Escherichia coli [5]
Staphylococcus aureus [4]
Bacillus subtilis [4]
Oryza sativa [4]
Epstein-barr virus (strain gd1) [3]
Plasmodium vivax [3]
(no species) [3]
Caulobacter vibrioides [3]
Severe acute respiratory syndrome coronavirus [3]
Escherichia coli [3]
Escherichia coli [3]
Candida albicans [3]
Trypanosoma brucei [3]
Acinetobacter genomosp. 16bj [3]
Listeria monocytogenes [2]
Pseudomonas aeruginosa [2]
Okubovirus spo1 [2]
Desulfovirgula thermocuniculi [2]
Arabidopsis thaliana [2]
Xenopus calcaratus [2]
Saccharomyces cerevisiae [2]
Escherichia coli [2]
Drosophila melanogaster [2]
Cebevirus halophobicum [2]
Lama glama [2]
Escherichia phage lambda [1]
Pseudomonas phage pp7 [1]
Bacillus subtilis [1]
Enterobacteria phage sfi [1]
Streptococcus pyogenes [1]
Pandoravirus salinus [1]
Invertebrate iridescent virus 6 [1]
Nipah virus [1]
Plasmodium falciparum [1]
Mycetohabitans rhizoxinica [1]
Conus marmoreus [1]
Komagataella pastoris [1]
Plasmodium falciparum [1]
Escherichia coli [1]
Bacteria abnormis [1]
Conus magus [1]
Escherichia coli [1]
Bos taurus [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yu Z [403]
Xu Y [56]
Li Y [50]
Yan R [50]
Li Z [48]
Li J [47]
Wang Y [47]
Agard DA [46]
Shiozaki M [46]
Wang M [45]
Chen X [43]
Wang X [41]
Liu Y [40]
Wu Z [40]
Zhang J [39]
Wang F [38]
Cheng Y [36]
Ren Y [36]
Zhao X [36]
Zhao Y [36]
Vale RD [35]
Chen Z [34]
Hong C [34]
Qi Y [34]
Guo C [33]
Hou H [33]
Lishko PV [33]
Skinner WM [33]
Yang H [33]
Zhao D [33]
Zhao S [33]
Shiozak M [32]
Skinner W [32]
Hu J [29]
Liu W [29]
Worrall LJ [27]
Greenan GA [26]
Greenan AG [25]
Strynadka NCJ [24]
Yu J [24]
Zhang X [24]
Zhang Y [24]
Zhao J [24]
Ludtke SJ [23]
Vuckovic M [23]
Li N [22]
Abraham J [21]
Liu CP [20]
Matthies D [20]
Xu RM [20]
Yu C [20]
Chen Q [19]
Dong Y [18]
He S [18]
Huang RK [18]
Li G [18]
Li W [18]
Wang L [18]
Yang S [18]
Zhang Z [18]
Zhu B [18]
Yang Y [17]
Atkinson CE [16]
Lu J [16]
Su J [16]
Wang Z [16]
Wu Y [16]
Yang B [16]
Zeng L [16]
Huang B [15]
Yu H [15]
Abskharon R [14]
Boyer DR [14]
Cheng X [14]
Chou HT [14]
Dolinsky JL [14]
Eisenberg DS [14]
Feigon J [14]
Ge P [14]
Hou K [14]
Jiang D [14]
Jiang YX [14]
Lutter L [14]
Pi J [14]
Sawaya MR [14]
Bai Q [13]
Chio US [13]
Deng W [13]
Huang Z [13]
Li L [13]
Thongchol J [13]
Chen M [12]
Ding D [12]
Hou P [12]
Huo T [12]
Jin M [12]
Li H [12]
Liu Z [12]
Song A [12]
Xiong J [12]

Author by ORCID

Xu Y [54]
Yu Z [54]
Agard DA [43]
Yu Z [42]
Shiozaki M [42]
Zhao Y [36]
Yu Z [34]
Hou H [33]
Skinner WM [32]
Chen Z [32]
Lishko PV [32]
Liu Y [30]
Wang X [29]
Li J [29]
Qi Y [29]
Liu W [29]
Zhao D [29]
Chen X [29]
Yang H [29]
Li Y [29]
Li Z [29]
Vale RD [27]
Cheng Y [23]
Zhang X [18]
Dong Y [18]
Zhu B [18]
Zhao J [17]
Wang F [16]
Ludtke SJ [16]
Zhang J [16]
Zeng L [16]
Wang Z [16]
Huang B [15]
Strynadka NCJ [14]
Jiang D [14]
Thongchol J [13]
Zhang Z [12]
Hu J [12]
Liu CP [12]
Li W [12]
Hou P [12]
Chio US [12]
Xu RM [12]
Yang N [12]
Zhang Z [12]
Xiong J [12]
Wang M [12]
Li G [12]
Ding D [12]
Yu J [12]
Song A [12]
Gao Y [11]
Matthies D [11]
Wang Y [11]
Xing Z [11]
Villa E [11]
Jin M [11]
Meng Y [10]
Yan R [10]
Wu D [10]
Huang Z [9]
Chen M [9]
Yu Z [8]
Young R [8]
Haas KM [8]
Zeytuni N [8]
Chamakura K [8]
Abraham J [8]
Yu H [8]
Theodore M [8]
Wang F [8]
Meng R [8]
Ouch C [8]
Lin J [7]
Lou J [7]
Zhang XC [7]
Zhou R [7]
Wang Y [7]
Armache JP [7]
Mukherjee P [7]
Narlikar GJ [7]
Yu Z [7]
Ge P [7]
Liu Z [7]
Chan KC [7]
Boyer DR [7]
Lu J [7]
Gao H [7]
Shen EZ [7]
Dolinsky JL [7]
Yang Y [7]
Xue C [7]
Yang S [7]
Huang A [7]
Sawaya MR [7]
Jiang YX [7]
Cheng X [7]
Eisenberg DS [7]
Baron JL [7]
Feigon J [7]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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EMD-65044

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Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-5.

CryoEM

Release date: June 3, 2026
Resolution: 3.24 Å
EM Method: Single-particle

Zhou L, Yu Z, Lin S, Jiang Y, Gao J, Ma Y, Jiang W, Liang S, Chen Y, Zhang Y, Lin Y, Liang M, Dai J, Zhang L, Xiao Y, Li T, Kong Z, Liu Q, He S, Wu Y, Yuan Q, Liu F, Zhang J, Zheng Q, Yu H, Gu Y, Li S, Xia N

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-65049

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Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-1

CryoEM

Release date: June 3, 2026
Resolution: 2.97 Å
EM Method: Single-particle

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-66051

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Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies CT1-5.

CryoEM

Release date: June 3, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9wla
Q-score: 0.5

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-66052

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3D View

Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies S309 and CT1-1.

CryoEM

Release date: June 3, 2026
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9wlb
Q-score: 0.494

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-70081

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Phosphonull T175A of stress-activating residues

CryoEM

Release date: May 6, 2026
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 9o3o
Q-score: 0.35

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-70087

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Phosphonull T209A of stress-activating residues

CryoEM

Release date: May 6, 2026
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 9o3z
Q-score: 0.412

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-70101

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Phosphomimetic T209E of stress-activating residues

CryoEM

Release date: May 6, 2026
Resolution: 4.02 Å
EM Method: Single-particle
Fitted PDBs: 9o4h
Q-score: 0.37

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-70112

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Phosphonull S56A of stress-activating residues

CryoEM

Release date: May 6, 2026
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 9o4r
Q-score: 0.417

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-70144

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3D View

Phosphonull T175A of stress-activating residues

CryoEM

Release date: May 6, 2026
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 9o5l
Q-score: 0.318

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-70743

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Nucleosome subtomogram average from chromatin droplets reconstituted with 30 bp linker DNA

CryoEM

Release date: May 6, 2026
Resolution: 5.8 Å
EM Method: Subtomogram averaging

Zhou H, Huertas J, Maristany MJ, Russell K, Hwang JH, Yao RW, Samanta N, Hutchings J, Billur R, Shiozaki M, Zhao X, Doolittle LK, Gibson BA, Soranno A, Riggi M, Espinosa JR, Yu Z, Villa E, Collepardo-Guevara R, Rosen MK

Science (2025) 390 pp. eadv6588-eadv6588 [ DOI: doi:10.1126/science.adv6588 Pubmed: 41343645 ]

Sort by: Download

Showing 1 - 10 of 408. Page 1 of 41

Display:

Statistics

Download

Select database:

EMDB [388]
EMPIAR [20]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [205]
Mus musculus [43]
Synthetic construct [34]
Simplexvirus humanalpha1 [13]
Escherichia coli [11]
Saccharomyces cerevisiae [9]
Salmonella enterica [8]
Xenopus laevis [8]
Salmonella enterica [8]
Human herpesvirus 1 [7]
Acinetobacter phage ap205 [7]
Sus scrofa [7]
Rattus norvegicus [6]
Thermoplasma acidophilum [6]
Severe acute respiratory syndrome coronavirus [6]
Listeria monocytogenes [5]
Pseudomonas aeruginosa [5]
Chlamydomonas reinhardtii [5]
Oryza sativa [5]
Escherichia coli [5]
Staphylococcus aureus [4]
Bacillus subtilis [4]
Oryza sativa [4]
Epstein-barr virus (strain gd1) [3]
Plasmodium vivax [3]
(no species) [3]
Caulobacter vibrioides [3]
Severe acute respiratory syndrome coronavirus [3]
Escherichia coli [3]
Escherichia coli [3]
Candida albicans [3]
Trypanosoma brucei [3]
Acinetobacter genomosp. 16bj [3]
Listeria monocytogenes [2]
Pseudomonas aeruginosa [2]
Okubovirus spo1 [2]
Desulfovirgula thermocuniculi [2]
Arabidopsis thaliana [2]
Xenopus calcaratus [2]
Saccharomyces cerevisiae [2]
Escherichia coli [2]
Drosophila melanogaster [2]
Cebevirus halophobicum [2]
Lama glama [2]
Escherichia phage lambda [1]
Pseudomonas phage pp7 [1]
Bacillus subtilis [1]
Enterobacteria phage sfi [1]
Streptococcus pyogenes [1]
Pandoravirus salinus [1]
Invertebrate iridescent virus 6 [1]
Nipah virus [1]
Plasmodium falciparum [1]
Mycetohabitans rhizoxinica [1]
Conus marmoreus [1]
Komagataella pastoris [1]
Plasmodium falciparum [1]
Escherichia coli [1]
Bacteria abnormis [1]
Conus magus [1]
Escherichia coli [1]
Bos taurus [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yu Z [403]
Xu Y [56]
Li Y [50]
Yan R [50]
Li Z [48]
Li J [47]
Wang Y [47]
Agard DA [46]
Shiozaki M [46]
Wang M [45]
Chen X [43]
Wang X [41]
Liu Y [40]
Wu Z [40]
Zhang J [39]
Wang F [38]
Cheng Y [36]
Ren Y [36]
Zhao X [36]
Zhao Y [36]
Vale RD [35]
Chen Z [34]
Hong C [34]
Qi Y [34]
Guo C [33]
Hou H [33]
Lishko PV [33]
Skinner WM [33]
Yang H [33]
Zhao D [33]
Zhao S [33]
Shiozak M [32]
Skinner W [32]
Hu J [29]
Liu W [29]
Worrall LJ [27]
Greenan GA [26]
Greenan AG [25]
Strynadka NCJ [24]
Yu J [24]
Zhang X [24]
Zhang Y [24]
Zhao J [24]
Ludtke SJ [23]
Vuckovic M [23]
Li N [22]
Abraham J [21]
Liu CP [20]
Matthies D [20]
Xu RM [20]
Yu C [20]
Chen Q [19]
Dong Y [18]
He S [18]
Huang RK [18]
Li G [18]
Li W [18]
Wang L [18]
Yang S [18]
Zhang Z [18]
Zhu B [18]
Yang Y [17]
Atkinson CE [16]
Lu J [16]
Su J [16]
Wang Z [16]
Wu Y [16]
Yang B [16]
Zeng L [16]
Huang B [15]
Yu H [15]
Abskharon R [14]
Boyer DR [14]
Cheng X [14]
Chou HT [14]
Dolinsky JL [14]
Eisenberg DS [14]
Feigon J [14]
Ge P [14]
Hou K [14]
Jiang D [14]
Jiang YX [14]
Lutter L [14]
Pi J [14]
Sawaya MR [14]
Bai Q [13]
Chio US [13]
Deng W [13]
Huang Z [13]
Li L [13]
Thongchol J [13]
Chen M [12]
Ding D [12]
Hou P [12]
Huo T [12]
Jin M [12]
Li H [12]
Liu Z [12]
Song A [12]
Xiong J [12]

Author by ORCID

Xu Y [54]
Yu Z [54]
Agard DA [43]
Yu Z [42]
Shiozaki M [42]
Zhao Y [36]
Yu Z [34]
Hou H [33]
Skinner WM [32]
Chen Z [32]
Lishko PV [32]
Liu Y [30]
Wang X [29]
Li J [29]
Qi Y [29]
Liu W [29]
Zhao D [29]
Chen X [29]
Yang H [29]
Li Y [29]
Li Z [29]
Vale RD [27]
Cheng Y [23]
Zhang X [18]
Dong Y [18]
Zhu B [18]
Zhao J [17]
Wang F [16]
Ludtke SJ [16]
Zhang J [16]
Zeng L [16]
Wang Z [16]
Huang B [15]
Strynadka NCJ [14]
Jiang D [14]
Thongchol J [13]
Zhang Z [12]
Hu J [12]
Liu CP [12]
Li W [12]
Hou P [12]
Chio US [12]
Xu RM [12]
Yang N [12]
Zhang Z [12]
Xiong J [12]
Wang M [12]
Li G [12]
Ding D [12]
Yu J [12]
Song A [12]
Gao Y [11]
Matthies D [11]
Wang Y [11]
Xing Z [11]
Villa E [11]
Jin M [11]
Meng Y [10]
Yan R [10]
Wu D [10]
Huang Z [9]
Chen M [9]
Yu Z [8]
Young R [8]
Haas KM [8]
Zeytuni N [8]
Chamakura K [8]
Abraham J [8]
Yu H [8]
Theodore M [8]
Wang F [8]
Meng R [8]
Ouch C [8]
Lin J [7]
Lou J [7]
Zhang XC [7]
Zhou R [7]
Wang Y [7]
Armache JP [7]
Mukherjee P [7]
Narlikar GJ [7]
Yu Z [7]
Ge P [7]
Liu Z [7]
Chan KC [7]
Boyer DR [7]
Lu J [7]
Gao H [7]
Shen EZ [7]
Dolinsky JL [7]
Yang Y [7]
Xue C [7]
Yang S [7]
Huang A [7]
Sawaya MR [7]
Jiang YX [7]
Cheng X [7]
Eisenberg DS [7]
Baron JL [7]
Feigon J [7]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links