Electron Microscopy Data Bank

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primary_citation_author:"Yang X"

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Current Database

Current status

Sample type

Organism

Homo sapiens [259]
Mus musculus [68]
Severe acute respiratory syndrome coronavirus [51]
Mycolicibacterium smegmatis [32]
Brome mosaic virus [24]
Synthetic construct [19]
Streptomyces coelicolor [18]
Mycobacterium tuberculosis [17]
Human coronavirus hku1 [15]
Saccharomyces cerevisiae [15]
Human coronavirus hku1 [12]
Bacillus subtilis [11]
Drosophila melanogaster [11]
Monkeypox virus [8]
Mycolicibacterium smegmatis [7]
Streptomyces sp. [6]
Escherichia fergusonii [5]
(no species) [5]
Gallus gallus [5]
Lama glama [5]
Foot-and-mouth disease virus [4]
Clostridioides difficile [4]
Mycolicibacterium smegmatis [4]
(no species) [4]
Drosophila bipectinata [4]
Saccharomyces cerevisiae [4]
Danio rerio [4]
Rattus norvegicus [3]
Bacillus phage spr [3]
Pseudoxanthomonas wuyuanensis [3]
Pseudomonas aeruginosa [3]
Oryza sativa [3]
Bacillus subtilis [3]
Escherichia coli [3]
Xenopus laevis [3]
Macaca fascicularis [3]
Human cytomegalovirus [2]
Pseudomonas aeruginosa [2]
Francisella tularensis [2]
Novilysobacter luteus [2]
Spbetavirus spbeta [2]
Dianlovirus menglaense [2]
Plasmodium falciparum [2]
Francisella tularensis [2]
Human coronavirus hku1 [2]
Escherichia coli [2]
Escherichia coli [2]
Pipistrellus nathusii [2]
Oplophorus gracilirostris [2]
Dabie bandavirus [1]
Human herpesvirus 3 [1]
Human immunodeficiency virus 1 [1]
Alphainfluenzavirus influenzae [1]
Middle east respiratory syndrome-related coronavirus [1]
Nitrospirae bacterium rbg_13_39_12 [1]
Streptomyces albus [1]
Campylobacter jejuni [1]
Metamycoplasma arthritidis [1]
(no species) [1]
Stenotrophomonas sp. cw117 [1]
Eptesicus fuscus [1]
Pseudomonas sp. '6.5 mw-19' [1]
Nitrosomonas halophila [1]
Neisseria meningitidis [1]
Simonsiella muelleri [1]
Conus magus [1]
Haemophilus parainfluenzae [1]
Pteronotus davyi [1]
Camelus dromedarius [1]
Bos taurus [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yang X [542]
Zhang X [131]
Rao Z [125]
Gao Y [116]
Wu J [97]
Liu H [95]
Wang Y [95]
Yang H [94]
Zhu Y [91]
Liu S [88]
Pan Y [77]
Dong Y [76]
Lu Y [76]
Zhou L [76]
Huang P [75]
Sun Y [75]
Feng S [74]
Gui M [74]
Hu J [74]
Liu M [74]
Sun R [74]
Wu JP [74]
Xiao Z [74]
Zheng B [74]
Zhou LN [74]
Guddat LW [73]
Zhang Y [66]
Wang W [61]
Liu F [59]
Chen X [57]
Wang H [50]
Guo H [44]
Shen YQ [43]
Zhang B [43]
Wang X [40]
Li J [39]
Xu J [38]
Zhang L [38]
Liang J [36]
Zhang H [36]
Shi Y [35]
Li X [34]
Yang Q [33]
Zhao Z [33]
Zheng J [33]
Chang S [32]
Wu C [32]
Cui Y [31]
Liu X [31]
Hu T [30]
Gong H [28]
Liu L [28]
Tang Y [28]
Zhou ZH [28]
Wang Q [27]
Zhao Y [27]
Chen J [25]
Lai Y [25]
Li Z [25]
Liu Y [25]
Lu X [25]
Zhou S [25]
Beren C [24]
Chakravarty A [24]
Cui YX [24]
Gelbart WM [24]
Knobler CM [24]
Li M [24]
Rao ALN [24]
Wang J [24]
Zhou Y [23]
Dong X [21]
Duan Y [21]
Feng Z [21]
Li Y [21]
Shen Y [21]
Xu H [21]
Zhang S [21]
Li S [20]
Lou Z [20]
Sun L [20]
Wen TL [20]
Yu L [20]
Zhang Z [20]
Zhou J [20]
Zhou X [20]
Deng Z [19]
Guo Y [19]
Sun Z [19]
Xie X [19]
Xie Y [19]
Yang W [19]
Zhu C [19]
Ji X [18]
Li T [18]
Qi J [18]
Wen T [18]
Xu W [18]
Yu F [18]
Du Z [17]

Author by ORCID

Zhou L [74]
Gui M [74]
Rao Z [60]
Gao Y [50]
Liu F [50]
Yang H [47]
Yang X [37]
Guddat LW [36]
Lu Y [27]
Guo H [27]
Gong H [26]
Zhang B [25]
Lai Y [25]
Zhou ZH [25]
Chakravarty A [24]
Beren C [24]
Rao ALN [24]
Cui Y [24]
Knobler CM [24]
Zheng J [23]
Zhao Y [20]
Yang X [19]
Shen Y [19]
Wang Y [19]
Yang X [17]
Xu W [16]
Yang X [16]
Zhang X [16]
Li J [16]
Lu X [16]
Wang Y [15]
Ma D [15]
Hu M [15]
Su N [15]
Lou Z [15]
Cao H [15]
Zhao Z [15]
Zhang Y [14]
Yang X [14]
Wen T [13]
Shao Z [13]
Zhou J [13]
Xia A [13]
Tang J [13]
Zhu P [13]
Wu J [13]
Xie Y [13]
Guo Y [13]
Zhou J [13]
Cheng T [13]
Qi J [13]
Yang Q [13]
Wang Q [12]
Ren Y [12]
Chang S [11]
Zhang H [11]
Chen X [10]
Pommier Y [10]
Yang W [10]
Yang X [10]
Hu T [10]
Lu Y [10]
Sui SF [9]
Yang X [9]
Tang Y [9]
Yang X [8]
He X [8]
Yan H [8]
Wu C [8]
Ye S [8]
Cai W [8]
Fan M [8]
Ye F [8]
Xu X [8]
Zhang L [8]
Xu HE [8]
Kixmoeller K [8]
Zhou X [8]
Liu Q [8]
Yuan Y [8]
Liang J [8]
Yang W [8]
Liu H [8]
Guo J [8]
Marmorstein R [8]
Wang R [8]
Xu H [8]
Li X [7]
Guo J [7]
Li Y [7]
Ding ZJ [7]
Mu A [7]
Wang X [7]
Xu H [7]
Wang J [7]
Xu J [7]
Wang Y [7]
Fan M [7]
Yang B [6]
Yin H [6]

Journal

CELL [105]
NAT COMMUN [88]
PNAS [57]
TO BE PUBLISHED [41]
NATURE [21]
NUCLEIC ACIDS RES [21]
CELL RES [20]
MOL CELL [20]
SCI ADV [18]
SCIENCE [18]
INT J BIOL MACROMOL [16]
CELL REP [12]
PROTEIN CELL [12]
CELL DISCOV [10]
NAT CHEM BIOL [10]
STRUCTURE [9]
BIORXIV [8]
SIGNAL TRANSDUCT TARGET THER [7]
J CELL BIOL [5]
NAT STRUCT MOL BIOL [5]
PLOS BIOL [5]
NAT MICROBIOL [4]
NEURON [4]
ELIFE [3]
J BIOL CHEM [3]
ACTA PHARM SIN B [2]
ACTA PHARMACOL.SIN. [2]
EBIOMEDICINE [2]
EMBO REP [2]
J NANOBIOTECHNOLOGY [2]
MBIO [2]
NAT BIOTECHNOL [2]
NAT IMMUNOL [2]
SCI TRANSL MED [2]
APPL BIOSCI [1]
BIOCHEM BIOPHYS RES COMMUN [1]
CELL DEATH DIS [1]
CELL METAB. [1]
COMMUN BIOL [1]
J BACTERIOL [1]
J EXP MED [1]
J MED CHEM [1]
J STRUCT BIOL [1]
NATURE BIOTECHNOLOGY [1]

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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EMD-65272

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The structure of DmOR67d-DmOrco in the cVA-bound state

CryoEM

Release date: July 8, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9vqp
Q-score: 0.512

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-65274

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The structure of DmOR67d-DmOrco in the VUAA1-bound state

CryoEM

Release date: July 8, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9vqr
Q-score: 0.503

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-65271

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The structure of DmOR67d-DmOrco in the apo state

CryoEM

Release date: July 1, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9vqo
Q-score: 0.555

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-65275

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The structure of DbOR67d-DbOrco in the apo-like state

CryoEM

Release date: July 1, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9vqs
Q-score: 0.612

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-65276

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The structure of DbOR67d-DbOrco in the cVA-bound state

CryoEM

Release date: July 1, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9vqt
Q-score: 0.527

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-65277

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The structure of DbOR67d-DbOrco in the Z11-bound state

CryoEM

Release date: July 1, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9vqu
Q-score: 0.592

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-65278

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The structure of DbOR67d-DbOrco in the VUAA1-bound state

CryoEM

Release date: July 1, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9vqv
Q-score: 0.583

Wang J, Yang C, Chang S, Jiao D, Lin J, Yang X, Cai W, Ma D, Ding ZJ, Huang J, Huang J, Fan M, Hu M, Wang Y, Xu H, Su N, Guo J

Cell Res (2026) [ DOI: doi:10.1038/s41422-026-01264-2 Pubmed: 42270979 ]

EMD-64397

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Cryo-EM structure of macaque red cone pigment with Q114N mutation

CryoEM

Release date: June 24, 2026
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 9upm
Q-score: 0.461

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64398

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Cryo-EM structure of macaque green cone pigment with Q114N mutation

CryoEM

Release date: June 24, 2026
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9upn
Q-score: 0.373

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64399

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Cryo-EM structure of macaque green cone pigment wild type

CryoEM

Release date: June 24, 2026
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 9upo
Q-score: 0.349

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

Sort by: Download

Showing 1 - 10 of 542. Page 1 of 55

Display:

Statistics

Download

Select database:

EMDB [540]
EMPIAR [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [259]
Mus musculus [68]
Severe acute respiratory syndrome coronavirus [51]
Mycolicibacterium smegmatis [32]
Brome mosaic virus [24]
Synthetic construct [19]
Streptomyces coelicolor [18]
Mycobacterium tuberculosis [17]
Human coronavirus hku1 [15]
Saccharomyces cerevisiae [15]
Human coronavirus hku1 [12]
Bacillus subtilis [11]
Drosophila melanogaster [11]
Monkeypox virus [8]
Mycolicibacterium smegmatis [7]
Streptomyces sp. [6]
Escherichia fergusonii [5]
(no species) [5]
Gallus gallus [5]
Lama glama [5]
Foot-and-mouth disease virus [4]
Clostridioides difficile [4]
Mycolicibacterium smegmatis [4]
(no species) [4]
Drosophila bipectinata [4]
Saccharomyces cerevisiae [4]
Danio rerio [4]
Rattus norvegicus [3]
Bacillus phage spr [3]
Pseudoxanthomonas wuyuanensis [3]
Pseudomonas aeruginosa [3]
Oryza sativa [3]
Bacillus subtilis [3]
Escherichia coli [3]
Xenopus laevis [3]
Macaca fascicularis [3]
Human cytomegalovirus [2]
Pseudomonas aeruginosa [2]
Francisella tularensis [2]
Novilysobacter luteus [2]
Spbetavirus spbeta [2]
Dianlovirus menglaense [2]
Plasmodium falciparum [2]
Francisella tularensis [2]
Human coronavirus hku1 [2]
Escherichia coli [2]
Escherichia coli [2]
Pipistrellus nathusii [2]
Oplophorus gracilirostris [2]
Dabie bandavirus [1]
Human herpesvirus 3 [1]
Human immunodeficiency virus 1 [1]
Alphainfluenzavirus influenzae [1]
Middle east respiratory syndrome-related coronavirus [1]
Nitrospirae bacterium rbg_13_39_12 [1]
Streptomyces albus [1]
Campylobacter jejuni [1]
Metamycoplasma arthritidis [1]
(no species) [1]
Stenotrophomonas sp. cw117 [1]
Eptesicus fuscus [1]
Pseudomonas sp. '6.5 mw-19' [1]
Nitrosomonas halophila [1]
Neisseria meningitidis [1]
Simonsiella muelleri [1]
Conus magus [1]
Haemophilus parainfluenzae [1]
Pteronotus davyi [1]
Camelus dromedarius [1]
Bos taurus [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yang X [542]
Zhang X [131]
Rao Z [125]
Gao Y [116]
Wu J [97]
Liu H [95]
Wang Y [95]
Yang H [94]
Zhu Y [91]
Liu S [88]
Pan Y [77]
Dong Y [76]
Lu Y [76]
Zhou L [76]
Huang P [75]
Sun Y [75]
Feng S [74]
Gui M [74]
Hu J [74]
Liu M [74]
Sun R [74]
Wu JP [74]
Xiao Z [74]
Zheng B [74]
Zhou LN [74]
Guddat LW [73]
Zhang Y [66]
Wang W [61]
Liu F [59]
Chen X [57]
Wang H [50]
Guo H [44]
Shen YQ [43]
Zhang B [43]
Wang X [40]
Li J [39]
Xu J [38]
Zhang L [38]
Liang J [36]
Zhang H [36]
Shi Y [35]
Li X [34]
Yang Q [33]
Zhao Z [33]
Zheng J [33]
Chang S [32]
Wu C [32]
Cui Y [31]
Liu X [31]
Hu T [30]
Gong H [28]
Liu L [28]
Tang Y [28]
Zhou ZH [28]
Wang Q [27]
Zhao Y [27]
Chen J [25]
Lai Y [25]
Li Z [25]
Liu Y [25]
Lu X [25]
Zhou S [25]
Beren C [24]
Chakravarty A [24]
Cui YX [24]
Gelbart WM [24]
Knobler CM [24]
Li M [24]
Rao ALN [24]
Wang J [24]
Zhou Y [23]
Dong X [21]
Duan Y [21]
Feng Z [21]
Li Y [21]
Shen Y [21]
Xu H [21]
Zhang S [21]
Li S [20]
Lou Z [20]
Sun L [20]
Wen TL [20]
Yu L [20]
Zhang Z [20]
Zhou J [20]
Zhou X [20]
Deng Z [19]
Guo Y [19]
Sun Z [19]
Xie X [19]
Xie Y [19]
Yang W [19]
Zhu C [19]
Ji X [18]
Li T [18]
Qi J [18]
Wen T [18]
Xu W [18]
Yu F [18]
Du Z [17]

Author by ORCID

Zhou L [74]
Gui M [74]
Rao Z [60]
Gao Y [50]
Liu F [50]
Yang H [47]
Yang X [37]
Guddat LW [36]
Lu Y [27]
Guo H [27]
Gong H [26]
Zhang B [25]
Lai Y [25]
Zhou ZH [25]
Chakravarty A [24]
Beren C [24]
Rao ALN [24]
Cui Y [24]
Knobler CM [24]
Zheng J [23]
Zhao Y [20]
Yang X [19]
Shen Y [19]
Wang Y [19]
Yang X [17]
Xu W [16]
Yang X [16]
Zhang X [16]
Li J [16]
Lu X [16]
Wang Y [15]
Ma D [15]
Hu M [15]
Su N [15]
Lou Z [15]
Cao H [15]
Zhao Z [15]
Zhang Y [14]
Yang X [14]
Wen T [13]
Shao Z [13]
Zhou J [13]
Xia A [13]
Tang J [13]
Zhu P [13]
Wu J [13]
Xie Y [13]
Guo Y [13]
Zhou J [13]
Cheng T [13]
Qi J [13]
Yang Q [13]
Wang Q [12]
Ren Y [12]
Chang S [11]
Zhang H [11]
Chen X [10]
Pommier Y [10]
Yang W [10]
Yang X [10]
Hu T [10]
Lu Y [10]
Sui SF [9]
Yang X [9]
Tang Y [9]
Yang X [8]
He X [8]
Yan H [8]
Wu C [8]
Ye S [8]
Cai W [8]
Fan M [8]
Ye F [8]
Xu X [8]
Zhang L [8]
Xu HE [8]
Kixmoeller K [8]
Zhou X [8]
Liu Q [8]
Yuan Y [8]
Liang J [8]
Yang W [8]
Liu H [8]
Guo J [8]
Marmorstein R [8]
Wang R [8]
Xu H [8]
Li X [7]
Guo J [7]
Li Y [7]
Ding ZJ [7]
Mu A [7]
Wang X [7]
Xu H [7]
Wang J [7]
Xu J [7]
Wang Y [7]
Fan M [7]
Yang B [6]
Yin H [6]

Journal

CELL [105]
NAT COMMUN [88]
PNAS [57]
TO BE PUBLISHED [41]
NATURE [21]
NUCLEIC ACIDS RES [21]
CELL RES [20]
MOL CELL [20]
SCI ADV [18]
SCIENCE [18]
INT J BIOL MACROMOL [16]
CELL REP [12]
PROTEIN CELL [12]
CELL DISCOV [10]
NAT CHEM BIOL [10]
STRUCTURE [9]
BIORXIV [8]
SIGNAL TRANSDUCT TARGET THER [7]
J CELL BIOL [5]
NAT STRUCT MOL BIOL [5]
PLOS BIOL [5]
NAT MICROBIOL [4]
NEURON [4]
ELIFE [3]
J BIOL CHEM [3]
ACTA PHARM SIN B [2]
ACTA PHARMACOL.SIN. [2]
EBIOMEDICINE [2]
EMBO REP [2]
J NANOBIOTECHNOLOGY [2]
MBIO [2]
NAT BIOTECHNOL [2]
NAT IMMUNOL [2]
SCI TRANSL MED [2]
APPL BIOSCI [1]
BIOCHEM BIOPHYS RES COMMUN [1]
CELL DEATH DIS [1]
CELL METAB. [1]
COMMUN BIOL [1]
J BACTERIOL [1]
J EXP MED [1]
J MED CHEM [1]
J STRUCT BIOL [1]
NATURE BIOTECHNOLOGY [1]

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links