Electron Microscopy Data Bank

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primary_citation_author:"Yang J"

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Current Database

Current status

Sample type

Organism

Homo sapiens [185]
Saccharomyces cerevisiae [34]
Synthetic construct [17]
Sus scrofa [14]
Mus musculus [13]
Severe acute respiratory syndrome coronavirus [13]
Influenza a virus [11]
Caenorhabditis elegans [11]
Metagenome [10]
Photorhabdus asymbiotica [8]
Drosophila melanogaster [8]
Saccharomyces cerevisiae [7]
Escherichia coli [7]
Rattus norvegicus [6]
Salicola phage cgphi29 [6]
Bos taurus [5]
Primate erythroparvovirus 1 [4]
Bacillus sp. dsm 5850 [4]
Bacillus subtilis [4]
Trichodesmium erythraeum [4]
Severe acute respiratory syndrome coronavirus [4]
Chlamydomonas reinhardtii [4]
Photorhabdus asymbiotica [4]
Xenopus laevis [4]
Lama glama [4]
Monkeypox virus [3]
Toxoplasma gondii [3]
Bacillus subtilis [3]
African swine fever virus [2]
Human mastadenovirus c [2]
Foot-and-mouth disease virus [2]
Vibrio phage icp1_2011_a [2]
Bacillus halotolerans [2]
Medicago truncatula [2]
Aequorea victoria [2]
Phage #d [2]
Mus sp. [1]
(no species) [1]
Foot-and-mouth disease virus [1]
Lactococcus lactis subsp. cremoris [1]
(no species) [1]
Thermosynechococcus elongatus [1]
Planctomycetes bacterium [1]
(no species) [1]
Siphoviridae sp. ct0106 [1]
Horseshoe bat sarbecovirus [1]
Alphainfluenzavirus influenzae [1]
Zika virus [1]
Trichoplusia ni [1]
Haemophilus parainfluenzae [1]
Escherichia coli [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yang J [358]
Zhang Z [90]
Zhang K [82]
Barford D [78]
Chai P [77]
Wang Y [76]
Geohring IC [51]
Markus SM [51]
Mclaughlin SH [49]
Zhang Y [41]
Li X [36]
Zhang H [36]
Chang L [32]
Wang X [31]
Zhang S [27]
Li Z [26]
Liu J [25]
Liu Y [24]
Muir KW [24]
Yin H [24]
Li H [23]
Dendooven T [22]
Gao GF [21]
Liu Z [21]
Shi Y [21]
Rao Q [20]
Xie Y [20]
Yatskevich S [20]
Li J [19]
Li S [19]
Li Y [19]
Liu W [19]
Gao Y [17]
Yang Y [17]
Jiang Y [16]
Wang T [16]
He Q [15]
Hu Z [15]
Mclaughlin S [15]
Qi J [15]
Zheng X [15]
Chen H [14]
Li L [14]
Liu H [14]
Markus S [14]
Sun H [14]
Xu HE [14]
Bi Y [13]
Chen Y [13]
Liu X [13]
Su D [13]
Fu G [12]
Jia M [12]
Lander GC [12]
Liu B [12]
Sun J [12]
Tian WX [12]
Tong Q [12]
Wang M [12]
Yang P [12]
Yildiz A [12]
Zhao Y [12]
Zheng T [12]
Zheng TY [12]
Boland A [11]
Li M [11]
Scheres S [11]
Schwabb J [11]
Wang J [11]
Zhang Q [11]
Chen W [10]
Cho E [10]
Day AG [10]
Gregory-lott ER [10]
Jayathilake C [10]
Jiang X [10]
Kim TH [10]
Mewhinney CE [10]
Nair R [10]
Scheres SHW [10]
Taylor DJ [10]
Virk RK [10]
Yan K [10]
Yang D [10]
Zhao H [10]
Dendooven TD [9]
Fu Y [9]
Gan J [9]
Gao J [9]
Huang Y [9]
Lee CH [9]
Schwab J [9]
Sun F [9]
Sun Y [9]
Tai L [9]
Yin G [9]
Yuan Z [9]
Zhang L [9]
Zhang W [9]
Zhao M [9]

Author by ORCID

Zhang K [81]
Yang J [81]
Chai P [77]
Barford D [71]
Zhang Z [61]
Yang J [56]
Markus SM [51]
Wang Y [51]
Mclaughlin SH [45]
Gao GF [20]
Dendooven T [19]
Shi Y [18]
Zhang H [17]
Yatskevich S [17]
Yang J [17]
Muir KW [16]
Yang J [15]
Hu Z [15]
Markus S [14]
Xu HE [14]
Rao Q [14]
Qi J [14]
Su D [13]
Tian WX [12]
Xie Y [12]
Liu J [12]
Bi Y [12]
Zhao Y [12]
Yildiz A [12]
Boland A [11]
Yang J [10]
Tai L [9]
Zhu Y [9]
Sun F [9]
Scheres SHW [9]
Yang J [9]
Yin G [9]
Zhang Z [9]
Schwab J [9]
Gan J [9]
Yan K [9]
Lander GC [9]
Zhang S [9]
Li N [8]
Cheng J [8]
Kim TH [8]
Chang L [8]
Tischer T [8]
Bellini D [8]
Gao N [8]
Yu J [7]
Garman EF [7]
Wang X [7]
Grime GW [7]
Deng Z [7]
Hofler A [7]
Yu F [7]
Predin M [7]
Alfieri C [7]
Liu Z [7]
Chan JF [6]
Li J [6]
Chan CC [6]
Yuan S [6]
Hou H [6]
Zhuang Y [6]
Morgan T [6]
Zhang AJ [6]
Cai B [6]
Yang Y [6]
Compton AA [6]
Poon VK [6]
Melcher K [6]
Lee CH [6]
Yin Y [6]
Jiang Y [6]
Chen H [6]
Zhang Y [6]
Xiao N [6]
Turner NN [6]
Zhan Y [6]
Liu X [5]
Yu G [5]
Li Z [5]
Tanokura M [4]
Mao C [4]
Miyakawa T [4]
Liu J [4]
Zhu C [4]
Moriya T [4]
Iyer BR [4]
Huang K [4]
Mclaughlin S [4]
Liu H [4]
Zhang H [4]
Jiang Y [4]
Heck AJR [4]
Li S [4]
Chou JJ [4]
Yang Y [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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Showing 1 - 10 of 358. Page 1 of 36

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EMDB [353]
EMPIAR [5]

Format:

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EMPIAR-13697

Release date: June 29, 2026
Dataset size: 2.2 TB
Experiment type: EMDB

Jayathilake C, Mewhinney CE, Gregory-Lott ER, Virk RK, Nair R, Yang J, Cho E, Day AG, Taylor DJ, Kim TH

J Mol Biol (2026) 438 [ DOI: 10.1016/j.jmb.2026.169753 Pubmed: 41819421 ]

Image sets:

Unaligned multi-frame micrographs of a Nucleosome Containing a Single-Strand Break at SHL −2.8 Bound to the Human PARP2 WGR Domain

EMPIAR-13698

Release date: June 29, 2026
Dataset size: 3.8 TB
Experiment type: EMDB

Jayathilake C, Mewhinney CE, Gregory-Lott ER, Virk RK, Nair R, Yang J, Cho E, Day AG, Taylor DJ, Kim TH

J Mol Biol (2026) 438 [ DOI: 10.1016/j.jmb.2026.169753 Pubmed: 41819421 ]

Image sets:

Unaligned multi-frame micrographs of a Nucleosome Containing a Single-Strand Break at SHL −2.8 Bound to the Human PARP2

EMD-55755

Download Map

3D View

Structure of the human inner kinetochore CCAN bound to a 3 CENP-A nucleosome

CryoEM

Focused map

Release date: May 20, 2026
Resolution: 9.5 Å
EM Method: Single-particle

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-55756

Download Map

3D View

Structure of the human inner kinetochore CCAN bound to a 5 CENP-A nucleosome

CryoEM

Focused map

Release date: May 20, 2026
Resolution: 15.5 Å
EM Method: Single-particle

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-55757

Download Map

3D View

Structure of the human inner kinetochore CCAN bound to DNA

CryoEM

Release date: May 20, 2026
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 9taw
Q-score: 0.349

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-55758

Download Map

3D View

Structure of the human inner kinetochore CCAN bound to a mono-CENP-A nucleosome

CryoEM

Release date: May 20, 2026
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 9tax
Q-score: 0.181

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-55759

Download Map

3D View

Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome

Composite map

CryoEM

Release date: May 20, 2026
Resolution: 15.5 Å
EM Method: Single-particle
Fitted PDBs: 9tay
Q-score: 0.077

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-56612

Download Map

3D View

Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome, consensus map

CryoEM

Consensus map

Release date: May 20, 2026
Resolution: 10.9 Å
EM Method: Single-particle

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-56683

Download Map

3D View

Structure of the human inner kinetochore CCAN and CENP-C bound to DNA

CryoEM

Release date: May 20, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 28op
Q-score: 0.455

Yu C, Muir KW, Yang J, Zhang Z, McLaughlin SH, Barford D

Nat Commun (2026) [ Pubmed: 42120391 DOI: doi:10.1038/s41467-026-72856-0 ]

EMD-66516

Download Map

3D View

AR234958 bound Mas1 Receptor Complex

CryoEM

Release date: May 20, 2026
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 9x40
Q-score: 0.478

Zhang Y, Wang Q, Liu H, Shan H, Gu Y, Yang J, Gao Y, Wu K, Yang D, Xu HE

EMBO J (2026) 45 pp. 3500-3513 [ DOI: doi:10.1038/s44318-026-00764-6 Pubmed: 41912627 ]

Sort by: Download

Showing 1 - 10 of 358. Page 1 of 36

Display:

Statistics

Download

Select database:

EMDB [353]
EMPIAR [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [185]
Saccharomyces cerevisiae [34]
Synthetic construct [17]
Sus scrofa [14]
Mus musculus [13]
Severe acute respiratory syndrome coronavirus [13]
Influenza a virus [11]
Caenorhabditis elegans [11]
Metagenome [10]
Photorhabdus asymbiotica [8]
Drosophila melanogaster [8]
Saccharomyces cerevisiae [7]
Escherichia coli [7]
Rattus norvegicus [6]
Salicola phage cgphi29 [6]
Bos taurus [5]
Primate erythroparvovirus 1 [4]
Bacillus sp. dsm 5850 [4]
Bacillus subtilis [4]
Trichodesmium erythraeum [4]
Severe acute respiratory syndrome coronavirus [4]
Chlamydomonas reinhardtii [4]
Photorhabdus asymbiotica [4]
Xenopus laevis [4]
Lama glama [4]
Monkeypox virus [3]
Toxoplasma gondii [3]
Bacillus subtilis [3]
African swine fever virus [2]
Human mastadenovirus c [2]
Foot-and-mouth disease virus [2]
Vibrio phage icp1_2011_a [2]
Bacillus halotolerans [2]
Medicago truncatula [2]
Aequorea victoria [2]
Phage #d [2]
Mus sp. [1]
(no species) [1]
Foot-and-mouth disease virus [1]
Lactococcus lactis subsp. cremoris [1]
(no species) [1]
Thermosynechococcus elongatus [1]
Planctomycetes bacterium [1]
(no species) [1]
Siphoviridae sp. ct0106 [1]
Horseshoe bat sarbecovirus [1]
Alphainfluenzavirus influenzae [1]
Zika virus [1]
Trichoplusia ni [1]
Haemophilus parainfluenzae [1]
Escherichia coli [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yang J [358]
Zhang Z [90]
Zhang K [82]
Barford D [78]
Chai P [77]
Wang Y [76]
Geohring IC [51]
Markus SM [51]
Mclaughlin SH [49]
Zhang Y [41]
Li X [36]
Zhang H [36]
Chang L [32]
Wang X [31]
Zhang S [27]
Li Z [26]
Liu J [25]
Liu Y [24]
Muir KW [24]
Yin H [24]
Li H [23]
Dendooven T [22]
Gao GF [21]
Liu Z [21]
Shi Y [21]
Rao Q [20]
Xie Y [20]
Yatskevich S [20]
Li J [19]
Li S [19]
Li Y [19]
Liu W [19]
Gao Y [17]
Yang Y [17]
Jiang Y [16]
Wang T [16]
He Q [15]
Hu Z [15]
Mclaughlin S [15]
Qi J [15]
Zheng X [15]
Chen H [14]
Li L [14]
Liu H [14]
Markus S [14]
Sun H [14]
Xu HE [14]
Bi Y [13]
Chen Y [13]
Liu X [13]
Su D [13]
Fu G [12]
Jia M [12]
Lander GC [12]
Liu B [12]
Sun J [12]
Tian WX [12]
Tong Q [12]
Wang M [12]
Yang P [12]
Yildiz A [12]
Zhao Y [12]
Zheng T [12]
Zheng TY [12]
Boland A [11]
Li M [11]
Scheres S [11]
Schwabb J [11]
Wang J [11]
Zhang Q [11]
Chen W [10]
Cho E [10]
Day AG [10]
Gregory-lott ER [10]
Jayathilake C [10]
Jiang X [10]
Kim TH [10]
Mewhinney CE [10]
Nair R [10]
Scheres SHW [10]
Taylor DJ [10]
Virk RK [10]
Yan K [10]
Yang D [10]
Zhao H [10]
Dendooven TD [9]
Fu Y [9]
Gan J [9]
Gao J [9]
Huang Y [9]
Lee CH [9]
Schwab J [9]
Sun F [9]
Sun Y [9]
Tai L [9]
Yin G [9]
Yuan Z [9]
Zhang L [9]
Zhang W [9]
Zhao M [9]

Author by ORCID

Zhang K [81]
Yang J [81]
Chai P [77]
Barford D [71]
Zhang Z [61]
Yang J [56]
Markus SM [51]
Wang Y [51]
Mclaughlin SH [45]
Gao GF [20]
Dendooven T [19]
Shi Y [18]
Zhang H [17]
Yatskevich S [17]
Yang J [17]
Muir KW [16]
Yang J [15]
Hu Z [15]
Markus S [14]
Xu HE [14]
Rao Q [14]
Qi J [14]
Su D [13]
Tian WX [12]
Xie Y [12]
Liu J [12]
Bi Y [12]
Zhao Y [12]
Yildiz A [12]
Boland A [11]
Yang J [10]
Tai L [9]
Zhu Y [9]
Sun F [9]
Scheres SHW [9]
Yang J [9]
Yin G [9]
Zhang Z [9]
Schwab J [9]
Gan J [9]
Yan K [9]
Lander GC [9]
Zhang S [9]
Li N [8]
Cheng J [8]
Kim TH [8]
Chang L [8]
Tischer T [8]
Bellini D [8]
Gao N [8]
Yu J [7]
Garman EF [7]
Wang X [7]
Grime GW [7]
Deng Z [7]
Hofler A [7]
Yu F [7]
Predin M [7]
Alfieri C [7]
Liu Z [7]
Chan JF [6]
Li J [6]
Chan CC [6]
Yuan S [6]
Hou H [6]
Zhuang Y [6]
Morgan T [6]
Zhang AJ [6]
Cai B [6]
Yang Y [6]
Compton AA [6]
Poon VK [6]
Melcher K [6]
Lee CH [6]
Yin Y [6]
Jiang Y [6]
Chen H [6]
Zhang Y [6]
Xiao N [6]
Turner NN [6]
Zhan Y [6]
Liu X [5]
Yu G [5]
Li Z [5]
Tanokura M [4]
Mao C [4]
Miyakawa T [4]
Liu J [4]
Zhu C [4]
Moriya T [4]
Iyer BR [4]
Huang K [4]
Mclaughlin S [4]
Liu H [4]
Zhang H [4]
Jiang Y [4]
Heck AJR [4]
Li S [4]
Chou JJ [4]
Yang Y [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links