Electron Microscopy Data Bank

Edit your search query here and hit Return to execute it:

primary_citation_author:"Yamashita K"

Filter By

Current Database

Current status

Sample type

Organism

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yamashita K [180]
Nureki O [72]
Nishizawa T [58]
Hiraizumi M [50]
Kobayashi K [47]
Nishimasu H [46]
Inoue A [39]
Kato HE [39]
Kusakizako T [39]
Fukuda M [38]
Okazaki S [38]
Kawakami K [34]
Matsui TE [32]
Ikeda H [30]
Kugawa M [27]
Koyanagi J [26]
Arai H [24]
Kato K [24]
Kobilka BK [24]
Mitsutake A [24]
Narita TJ [24]
Sumikama T [24]
Sumino A [24]
Tambo M [24]
Tatsumi M [24]
Yokoi S [24]
Tomita A [23]
Lee Y [22]
Isayama Y [18]
Shihoya W [18]
Abudayyeh OO [16]
Baradaran R [16]
Cais O [16]
Gootenberg JS [16]
Greger IH [16]
Ho H [16]
Ishikawa J [16]
Ivica J [16]
Krieger JM [16]
Stockwell I [16]
Zhang D [16]
Murata T [14]
Nagahata N [14]
Ogasawara S [14]
Soma T [14]
Murshudov G [13]
Cannone G [12]
Chen S [12]
Dalby J [12]
Dickerson JL [12]
El-gomati MM [12]
Gittins O [12]
Henderson R [12]
Hirano H [12]
Hutchings KA [12]
Mcmullan G [12]
Meffert M [12]
Mihaylov D [12]
Nakagawa R [12]
Naydenova K [12]
Peet MJ [12]
Russo CJ [12]
Schulze-briese C [12]
Sobhy MA [12]
Warshamanage R [12]
Wells T [12]
Wilson H [12]
Jin C [11]
Kanai Y [11]
Mitsuda Y [11]
Ohgaki R [11]
Sobhy M [11]
Xu M [11]
Arya B [10]
Fell CW [10]
Greger I [10]
Ishiguro S [10]
Kannan S [10]
Lequyer J [10]
Ramani H [10]
Sapkota S [10]
Schmitt-ulms C [10]
Tagliaferri D [10]
Yachie N [10]
Zhang F [10]
Kato T [9]
Miyauchi H [9]
Dror RO [8]
Kim YS [7]
Deisseroth K [6]
Demura K [6]
Gragera M [6]
Hiramoto T [6]
Horinaka K [6]
Jividen K [6]
Kajimoto S [6]
Kashiwakura Y [6]
Kikkawa M [6]
Kim S [6]
Kishi KE [6]

Author by ORCID

Yamashita K [144]
Nureki O [46]
Kato HE [37]
Hiraizumi M [36]
Kawakami K [32]
Nishizawa T [31]
Fukuda M [31]
Kusakizako T [30]
Nishimasu H [29]
Inoue A [27]
Kobayashi K [26]
Kobilka BK [24]
Mitsutake A [24]
Sumikama T [24]
Ivica J [16]
Baradaran R [16]
Greger IH [16]
Ho H [16]
Tomita A [15]
Ishikawa J [15]
Kato K [14]
Ogasawara S [13]
Murata T [13]
Dickerson JL [11]
Mcmullan G [11]
Naydenova K [11]
Meffert M [11]
Hutchings KA [11]
Kanai Y [11]
Wilson H [11]
Peet MJ [11]
Sobhy MA [11]
Gittins O [11]
Cannone G [11]
Russo CJ [11]
Ohgaki R [11]
El-gomati MM [11]
Lee Y [11]
Schulze-briese C [11]
Chen S [11]
Henderson R [11]
Dalby J [11]
Wells T [11]
Murshudov G [10]
Arya B [10]
Lee Y [10]
Nagahata N [8]
Dror RO [7]
Ohmori T [6]
Tsai SQ [6]
Ishiguro S [6]
Osawa T [6]
Kashiwakura Y [6]
Omura SN [6]
Hiramoto T [6]
Shihoya W [6]
Mori H [6]
Onishi K [6]
Demura K [5]
Nagata T [5]
Nomura K [5]
Kiga K [5]
Kato T [5]
Taruno A [5]
Chihara K [5]
Wang PY [5]
Kannan S [5]
Shimada H [5]
Suzuki T [5]
Yoneyama K [5]
Pai JJ [4]
Konermann S [4]
Perry NT [4]
Pawluk A [4]
Hsu PD [4]
Zhang F [4]
Koonin EV [4]
Yamada S [4]
Maturana AD [3]
Shikakura T [3]
Cai Y [3]
Sobajima T [3]
Tajima S [3]
Jo Y [3]
Homma K [3]
Hagino T [3]
Nomura N [3]
Takaramoto S [3]
Fujiwara Y [3]
Kasuya G [3]
Yang Y [3]
Takahashi S [3]
Shibata M [2]
Byrne EFX [2]
Saito K [2]
Suomivuori CM [2]
Kim S [2]
Nakagawa R [2]
Ishikita H [2]
Tsujimura M [2]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

Sort by: Download

Showing 1 - 10 of 185. Page 1 of 19

Display:

Statistics

Download

Select database:

EMDB [162]
EMPIAR [23]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

EMD-66346

Download Map

3D View

Raw data

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9wxh
Q-score: 0.61

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-66347

Download Map

3D View

Raw data

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9wxi
Q-score: 0.5

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-66348

Download Map

3D View

Raw data

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9wxj
Q-score: 0.59

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-69899

Download Map

3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.7 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-69900

Download Map

3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.9 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-69901

Download Map

3D View

Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state

CryoEM

Release date: June 24, 2026
Resolution: 2.8 Å
EM Method: Single-particle

Mitsuda Y, Sugaya M, Ishikawa J, Nagahata N, Okazaki S, Hiraizumi M, Kato K, Gootenberg JS, Abudayyeh OO, Osawa T, Yamashita K, Nishimasu H

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74422-0 Pubmed: 42342668 ]

EMD-64904

Download Map

3D View

Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Go complex in nucleotide-free C state

Release date: June 3, 2026
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9vat
Q-score: 0.447

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64905

Download Map

3D View

Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Go complex in nucleotide-free NC state 1

Release date: June 3, 2026
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 9vau
Q-score: 0.515

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64906

Download Map

3D View

Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Go complex in nucleotide-free NC state 2

Release date: June 3, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9vav
Q-score: 0.511

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64907

Download Map

3D View

Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Gq delipidated complex in nucleotide-free C state

Release date: June 3, 2026
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 9vaw
Q-score: -0.028

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

Sort by: Download

Showing 1 - 10 of 185. Page 1 of 19

Display:

Statistics

Download

Select database:

EMDB [162]
EMPIAR [23]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yamashita K [180]
Nureki O [72]
Nishizawa T [58]
Hiraizumi M [50]
Kobayashi K [47]
Nishimasu H [46]
Inoue A [39]
Kato HE [39]
Kusakizako T [39]
Fukuda M [38]
Okazaki S [38]
Kawakami K [34]
Matsui TE [32]
Ikeda H [30]
Kugawa M [27]
Koyanagi J [26]
Arai H [24]
Kato K [24]
Kobilka BK [24]
Mitsutake A [24]
Narita TJ [24]
Sumikama T [24]
Sumino A [24]
Tambo M [24]
Tatsumi M [24]
Yokoi S [24]
Tomita A [23]
Lee Y [22]
Isayama Y [18]
Shihoya W [18]
Abudayyeh OO [16]
Baradaran R [16]
Cais O [16]
Gootenberg JS [16]
Greger IH [16]
Ho H [16]
Ishikawa J [16]
Ivica J [16]
Krieger JM [16]
Stockwell I [16]
Zhang D [16]
Murata T [14]
Nagahata N [14]
Ogasawara S [14]
Soma T [14]
Murshudov G [13]
Cannone G [12]
Chen S [12]
Dalby J [12]
Dickerson JL [12]
El-gomati MM [12]
Gittins O [12]
Henderson R [12]
Hirano H [12]
Hutchings KA [12]
Mcmullan G [12]
Meffert M [12]
Mihaylov D [12]
Nakagawa R [12]
Naydenova K [12]
Peet MJ [12]
Russo CJ [12]
Schulze-briese C [12]
Sobhy MA [12]
Warshamanage R [12]
Wells T [12]
Wilson H [12]
Jin C [11]
Kanai Y [11]
Mitsuda Y [11]
Ohgaki R [11]
Sobhy M [11]
Xu M [11]
Arya B [10]
Fell CW [10]
Greger I [10]
Ishiguro S [10]
Kannan S [10]
Lequyer J [10]
Ramani H [10]
Sapkota S [10]
Schmitt-ulms C [10]
Tagliaferri D [10]
Yachie N [10]
Zhang F [10]
Kato T [9]
Miyauchi H [9]
Dror RO [8]
Kim YS [7]
Deisseroth K [6]
Demura K [6]
Gragera M [6]
Hiramoto T [6]
Horinaka K [6]
Jividen K [6]
Kajimoto S [6]
Kashiwakura Y [6]
Kikkawa M [6]
Kim S [6]
Kishi KE [6]

Author by ORCID

Yamashita K [144]
Nureki O [46]
Kato HE [37]
Hiraizumi M [36]
Kawakami K [32]
Nishizawa T [31]
Fukuda M [31]
Kusakizako T [30]
Nishimasu H [29]
Inoue A [27]
Kobayashi K [26]
Kobilka BK [24]
Mitsutake A [24]
Sumikama T [24]
Ivica J [16]
Baradaran R [16]
Greger IH [16]
Ho H [16]
Tomita A [15]
Ishikawa J [15]
Kato K [14]
Ogasawara S [13]
Murata T [13]
Dickerson JL [11]
Mcmullan G [11]
Naydenova K [11]
Meffert M [11]
Hutchings KA [11]
Kanai Y [11]
Wilson H [11]
Peet MJ [11]
Sobhy MA [11]
Gittins O [11]
Cannone G [11]
Russo CJ [11]
Ohgaki R [11]
El-gomati MM [11]
Lee Y [11]
Schulze-briese C [11]
Chen S [11]
Henderson R [11]
Dalby J [11]
Wells T [11]
Murshudov G [10]
Arya B [10]
Lee Y [10]
Nagahata N [8]
Dror RO [7]
Ohmori T [6]
Tsai SQ [6]
Ishiguro S [6]
Osawa T [6]
Kashiwakura Y [6]
Omura SN [6]
Hiramoto T [6]
Shihoya W [6]
Mori H [6]
Onishi K [6]
Demura K [5]
Nagata T [5]
Nomura K [5]
Kiga K [5]
Kato T [5]
Taruno A [5]
Chihara K [5]
Wang PY [5]
Kannan S [5]
Shimada H [5]
Suzuki T [5]
Yoneyama K [5]
Pai JJ [4]
Konermann S [4]
Perry NT [4]
Pawluk A [4]
Hsu PD [4]
Zhang F [4]
Koonin EV [4]
Yamada S [4]
Maturana AD [3]
Shikakura T [3]
Cai Y [3]
Sobajima T [3]
Tajima S [3]
Jo Y [3]
Homma K [3]
Hagino T [3]
Nomura N [3]
Takaramoto S [3]
Fujiwara Y [3]
Kasuya G [3]
Yang Y [3]
Takahashi S [3]
Shibata M [2]
Byrne EFX [2]
Saito K [2]
Suomivuori CM [2]
Kim S [2]
Nakagawa R [2]
Ishikita H [2]
Tsujimura M [2]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links