Electron Microscopy Data Bank

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primary_citation_author:"Xu J"

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Current Database

Current status

Sample type

Organism

Homo sapiens [173]
Synthetic construct [68]
Saccharomyces cerevisiae [53]
Mus musculus [52]
Severe acute respiratory syndrome coronavirus [36]
Saccharomyces cerevisiae [35]
Algoriphagus machipongonensis [27]
Tetrahymena thermophila [22]
Lama glama [16]
Aureispira sp. ccb-qb1 [15]
Mycobacterium tuberculosis [13]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [12]
Candidatus lokiarchaeum ossiferum [12]
Bacillus phage phi29 [11]
Xenopus laevis [11]
Streptomyces coelicolor [9]
Hepatitis b virus [8]
Escherichia coli [8]
Escherichia coli [8]
Sus scrofa [8]
Bos taurus [8]
Human immunodeficiency virus 1 [7]
Halogeometricum borinquense [7]
Human immunodeficiency virus 1 [7]
Monkeypox virus [6]
Streptomyces sp. [6]
Geobacillus thermodenitrificans [6]
Bacillus subtilis [5]
Severe acute respiratory syndrome coronavirus [5]
Saccharomyces cerevisiae [5]
Hepatitis b virus [4]
Shigella flexneri [4]
Mycobacterium tuberculosis [4]
Rattus norvegicus [3]
Mycolicibacterium smegmatis [3]
Aureispira sp. [3]
Bacteroides fragilis [3]
(no species) [3]
Salmonella enterica [3]
Filamentous phage [2]
Mycolicibacterium smegmatis [2]
Vicugna pacos [2]
Uncultured virus [2]
Spinacia oleracea [2]
Haloferax elongans [2]
Plasmodium falciparum [2]
Aequorea victoria [2]
(no species) [2]
Chaetomium thermophilum [2]
Enterovirus b [1]
Salmonella virus ike [1]
Rift valley fever phlebovirus [1]
Gammaretrovirus murleu [1]
Streptomyces avidinii [1]
Thermoplasma acidophilum [1]
Mycolicibacterium smegmatis [1]
Ribosome display vector prdv [1]
Haloarcula marismortui [1]
Candidatus amoebophilus asiaticus [1]
Pyrococcus abyssi [1]
Plasmodium falciparum [1]
Camelus ferus [1]
Pseudoalteromonas luteoviolacea [1]
Escherichia coli [1]
Komagataella pastoris [1]
(no species) [1]
(no species) [1]
Bacteroides thetaiotaomicron [1]
Canis lupus [1]
Equus caballus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu J [545]
Pilhofer M [143]
Zhang Y [71]
Wang D [47]
Gao Y [43]
Rao Z [43]
Chen L [40]
Chen H [39]
Wang W [39]
Li L [38]
Yang X [38]
Zhou S [38]
Gong H [37]
Guddat LW [37]
Lai Y [37]
Lien YW [37]
Wollweber F [37]
Yu L [37]
Feng Z [35]
Liu F [34]
Wieczorek M [34]
Zhao Z [33]
Eisenstein F [31]
Feldmuller M [31]
Wang J [30]
Weiss GL [30]
Beltrao P [29]
Ericson CF [29]
Wang HW [29]
Chen Y [28]
Liu Y [28]
Zhang J [28]
He X [27]
Xiang Y [27]
Wang H [26]
Zhu Y [25]
Li Z [24]
Zhu L [24]
Du Y [23]
Liu X [23]
Xu JW [23]
Xu Y [23]
Zhang C [23]
Aarts E [22]
Beltro P [22]
Cai B [22]
Collet EH [22]
Hu W [22]
Ishikawa T [22]
Kobilka BK [22]
Leitner A [22]
Li S [22]
Luo L [22]
Pearson CG [22]
Zhang P [22]
Li W [21]
Liu Z [21]
Malit JJL [21]
Tang Y [21]
Zhang Z [21]
Baker D [20]
Borst AJ [20]
Courbet A [20]
Gao X [20]
Li J [20]
Ran T [20]
Wu Y [20]
Zhang X [20]
Ammerman A [19]
Ericson C [19]
King N [19]
Liu B [19]
Ma C [19]
Ponce-toledo RI [19]
Rodrigues-oliveira T [19]
Rutaganira FUN [19]
Schleper C [19]
Shen J [19]
Wang X [19]
Wu C [19]
Amendola D [18]
Bartlau N [18]
Chen G [18]
Dickinson MS [18]
Du Z [18]
Furusawa G [18]
Gmeiner P [18]
Lee KS [18]
Lien Y-W [18]
Liu N [18]
Peng H [18]
Polz MF [18]
Stocker R [18]
Sun F [18]
Wang Y [18]
Wu K [18]
Bera AK [17]
Bethel N [17]
Bhabha G [17]
Brunette TJ [17]

Author by ORCID

Xu J [141]
Pilhofer M [104]
Xu J [38]
Gong H [37]
Lien YW [37]
Wollweber F [36]
Liu F [34]
Wieczorek M [34]
Xu J [33]
Eisenstein F [31]
Feldmuller M [31]
Weiss GL [30]
Xu J [30]
Chen L [24]
Xu J [24]
Du Y [23]
Gao Y [23]
Kobilka BK [22]
Aarts E [22]
Ishikawa T [22]
Beltrao P [22]
Wang D [22]
Cai B [22]
Pearson CG [22]
Leitner A [22]
Luo L [22]
Collet EH [22]
Lai Y [20]
Guddat LW [20]
Xiang Y [20]
Rutaganira FUN [19]
Wang HW [19]
Ran T [19]
Xu J [19]
Ericson CF [19]
Liu B [19]
Lee KS [18]
Stocker R [18]
Gmeiner P [18]
Polz MF [18]
Bartlau N [18]
Li W [18]
Chen H [18]
Zhang P [18]
Amendola D [18]
Wettstein R [17]
Matos J [17]
Xu HE [17]
Peng H [17]
Hugener J [17]
Henggeler A [17]
Chen L [16]
Baker D [16]
Gui M [16]
Li Z [16]
Shen Y [16]
Courbet A [16]
Xu J [16]
Ammerman A [15]
Lahiri I [14]
Xu J [14]
Kibler RD [13]
Hsia Y [13]
Bethel N [13]
Bera AK [13]
Kollman JM [13]
Yang EC [13]
Leung PJY [13]
Ekiert D [13]
Sankaran B [13]
Han HL [13]
Calise SJ [13]
Huddy TF [13]
Davila-hernandez FA [13]
Hubner H [13]
Mchugh R [13]
Bhabha G [13]
Brunette TJ [13]
Carr KD [13]
Xu Y [12]
Oh J [12]
Minas HA [12]
Forchhammer K [12]
Liu N [12]
Marxer F [12]
Fernandez-tornero C [11]
Yao H [11]
Marqusee S [11]
He X [11]
Song Y [11]
O'brien ES [11]
Sanz-murillo M [11]
Afanasyev P [11]
Latorraca NR [11]
Krishna Kumar K [11]
Gil-carton D [11]
Isacoff EY [11]
Velikov D [11]
Kang Y [10]
Rao Z [10]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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Showing 1 - 10 of 546. Page 1 of 55

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EMDB [535]
EMPIAR [11]

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EMD-65749

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Structure of yeast Pol II in complex with a short control scaffold lacking cisplatin-ICL lesion.

CryoEM

Release date: June 24, 2026
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 9w8r
Q-score: 0.489

Xu J, Zhu L

To Be Published

EMD-65750

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Structure of mammalian RNA polymerase II stalled by a cisplatin-induced inter-strand crosslink lesion at the 2 position.

CryoEM

Release date: June 24, 2026
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9w8s
Q-score: 0.448

Xu J, Zhu L

To Be Published

EMD-65751

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3D View

Structure of yeast Pol II in complex with a cisplatin-induced inter-strand crosslink lesion at the 7 position.

CryoEM

Release date: June 24, 2026
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 9w8t
Q-score: 0.493

Xu J, Zhu L

To Be Published

EMD-65752

Download Map

3D View

Structure of pre-translocation state of yeast Pol II complexed with a cisplatin-induced inter-strand crosslink at the 2 position.

CryoEM

Release date: June 24, 2026
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 9w8u
Q-score: 0.538

Xu J, Zhu L

To Be Published

EMD-65753

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3D View

Structure of post-translocation state of yeast Pol II complexed with a cisplatin-induced inter-strand crosslink at the 2 position.

CryoEM

Release date: June 24, 2026
Resolution: 2.23 Å
EM Method: Single-particle
Fitted PDBs: 9w8v
Q-score: 0.586

Xu J, Zhu L

To Be Published

EMD-65754

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3D View

Structure of backtracked yeast Pol II in complex with a cisplatin-induced inter-strand crosslink lesion at the 2 position.

CryoEM

Release date: June 24, 2026
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 9w8w
Q-score: 0.472

Xu J, Zhu L

To Be Published

EMD-65755

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3D View

Structure of yeast Pol II complexed with a longer scaffold containing a cisplatin-induced inter-strand crosslink lesion at the 5 position.

CryoEM

Release date: June 24, 2026
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 9w8x
Q-score: 0.48

Xu J, Zhu L

To Be Published

EMD-65756

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3D View

Structure of yeast Pol II complexed with a longer scaffold containing a cisplatin-induced inter-strand crosslink at the 3 position.

CryoEM

Release date: June 24, 2026
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 9w8y
Q-score: 0.449

Xu J, Zhu L

To Be Published

EMD-65757

Download Map

3D View

Structure of yeast Pol II complexed with a longer scaffold containing a cisplatin-induced inter-strand crosslink at the 2 position.

CryoEM

Release date: June 24, 2026
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9w8z
Q-score: 0.466

Xu J, Zhu L

To Be Published

EMD-66161

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3D View

Structure of yeast Pol II-Elf1 complex containing a cisplatin-ICL lesion at 7 position.

CryoEM

Release date: June 24, 2026
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 9wq7
Q-score: 0.514

Xu J, Zhu L

To Be Published

Sort by: Download

Showing 1 - 10 of 546. Page 1 of 55

Display:

Statistics

Download

Select database:

EMDB [535]
EMPIAR [11]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [173]
Synthetic construct [68]
Saccharomyces cerevisiae [53]
Mus musculus [52]
Severe acute respiratory syndrome coronavirus [36]
Saccharomyces cerevisiae [35]
Algoriphagus machipongonensis [27]
Tetrahymena thermophila [22]
Lama glama [16]
Aureispira sp. ccb-qb1 [15]
Mycobacterium tuberculosis [13]
Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [12]
Candidatus lokiarchaeum ossiferum [12]
Bacillus phage phi29 [11]
Xenopus laevis [11]
Streptomyces coelicolor [9]
Hepatitis b virus [8]
Escherichia coli [8]
Escherichia coli [8]
Sus scrofa [8]
Bos taurus [8]
Human immunodeficiency virus 1 [7]
Halogeometricum borinquense [7]
Human immunodeficiency virus 1 [7]
Monkeypox virus [6]
Streptomyces sp. [6]
Geobacillus thermodenitrificans [6]
Bacillus subtilis [5]
Severe acute respiratory syndrome coronavirus [5]
Saccharomyces cerevisiae [5]
Hepatitis b virus [4]
Shigella flexneri [4]
Mycobacterium tuberculosis [4]
Rattus norvegicus [3]
Mycolicibacterium smegmatis [3]
Aureispira sp. [3]
Bacteroides fragilis [3]
(no species) [3]
Salmonella enterica [3]
Filamentous phage [2]
Mycolicibacterium smegmatis [2]
Vicugna pacos [2]
Uncultured virus [2]
Spinacia oleracea [2]
Haloferax elongans [2]
Plasmodium falciparum [2]
Aequorea victoria [2]
(no species) [2]
Chaetomium thermophilum [2]
Enterovirus b [1]
Salmonella virus ike [1]
Rift valley fever phlebovirus [1]
Gammaretrovirus murleu [1]
Streptomyces avidinii [1]
Thermoplasma acidophilum [1]
Mycolicibacterium smegmatis [1]
Ribosome display vector prdv [1]
Haloarcula marismortui [1]
Candidatus amoebophilus asiaticus [1]
Pyrococcus abyssi [1]
Plasmodium falciparum [1]
Camelus ferus [1]
Pseudoalteromonas luteoviolacea [1]
Escherichia coli [1]
Komagataella pastoris [1]
(no species) [1]
(no species) [1]
Bacteroides thetaiotaomicron [1]
Canis lupus [1]
Equus caballus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu J [545]
Pilhofer M [143]
Zhang Y [71]
Wang D [47]
Gao Y [43]
Rao Z [43]
Chen L [40]
Chen H [39]
Wang W [39]
Li L [38]
Yang X [38]
Zhou S [38]
Gong H [37]
Guddat LW [37]
Lai Y [37]
Lien YW [37]
Wollweber F [37]
Yu L [37]
Feng Z [35]
Liu F [34]
Wieczorek M [34]
Zhao Z [33]
Eisenstein F [31]
Feldmuller M [31]
Wang J [30]
Weiss GL [30]
Beltrao P [29]
Ericson CF [29]
Wang HW [29]
Chen Y [28]
Liu Y [28]
Zhang J [28]
He X [27]
Xiang Y [27]
Wang H [26]
Zhu Y [25]
Li Z [24]
Zhu L [24]
Du Y [23]
Liu X [23]
Xu JW [23]
Xu Y [23]
Zhang C [23]
Aarts E [22]
Beltro P [22]
Cai B [22]
Collet EH [22]
Hu W [22]
Ishikawa T [22]
Kobilka BK [22]
Leitner A [22]
Li S [22]
Luo L [22]
Pearson CG [22]
Zhang P [22]
Li W [21]
Liu Z [21]
Malit JJL [21]
Tang Y [21]
Zhang Z [21]
Baker D [20]
Borst AJ [20]
Courbet A [20]
Gao X [20]
Li J [20]
Ran T [20]
Wu Y [20]
Zhang X [20]
Ammerman A [19]
Ericson C [19]
King N [19]
Liu B [19]
Ma C [19]
Ponce-toledo RI [19]
Rodrigues-oliveira T [19]
Rutaganira FUN [19]
Schleper C [19]
Shen J [19]
Wang X [19]
Wu C [19]
Amendola D [18]
Bartlau N [18]
Chen G [18]
Dickinson MS [18]
Du Z [18]
Furusawa G [18]
Gmeiner P [18]
Lee KS [18]
Lien Y-W [18]
Liu N [18]
Peng H [18]
Polz MF [18]
Stocker R [18]
Sun F [18]
Wang Y [18]
Wu K [18]
Bera AK [17]
Bethel N [17]
Bhabha G [17]
Brunette TJ [17]

Author by ORCID

Xu J [141]
Pilhofer M [104]
Xu J [38]
Gong H [37]
Lien YW [37]
Wollweber F [36]
Liu F [34]
Wieczorek M [34]
Xu J [33]
Eisenstein F [31]
Feldmuller M [31]
Weiss GL [30]
Xu J [30]
Chen L [24]
Xu J [24]
Du Y [23]
Gao Y [23]
Kobilka BK [22]
Aarts E [22]
Ishikawa T [22]
Beltrao P [22]
Wang D [22]
Cai B [22]
Pearson CG [22]
Leitner A [22]
Luo L [22]
Collet EH [22]
Lai Y [20]
Guddat LW [20]
Xiang Y [20]
Rutaganira FUN [19]
Wang HW [19]
Ran T [19]
Xu J [19]
Ericson CF [19]
Liu B [19]
Lee KS [18]
Stocker R [18]
Gmeiner P [18]
Polz MF [18]
Bartlau N [18]
Li W [18]
Chen H [18]
Zhang P [18]
Amendola D [18]
Wettstein R [17]
Matos J [17]
Xu HE [17]
Peng H [17]
Hugener J [17]
Henggeler A [17]
Chen L [16]
Baker D [16]
Gui M [16]
Li Z [16]
Shen Y [16]
Courbet A [16]
Xu J [16]
Ammerman A [15]
Lahiri I [14]
Xu J [14]
Kibler RD [13]
Hsia Y [13]
Bethel N [13]
Bera AK [13]
Kollman JM [13]
Yang EC [13]
Leung PJY [13]
Ekiert D [13]
Sankaran B [13]
Han HL [13]
Calise SJ [13]
Huddy TF [13]
Davila-hernandez FA [13]
Hubner H [13]
Mchugh R [13]
Bhabha G [13]
Brunette TJ [13]
Carr KD [13]
Xu Y [12]
Oh J [12]
Minas HA [12]
Forchhammer K [12]
Liu N [12]
Marxer F [12]
Fernandez-tornero C [11]
Yao H [11]
Marqusee S [11]
He X [11]
Song Y [11]
O'brien ES [11]
Sanz-murillo M [11]
Afanasyev P [11]
Latorraca NR [11]
Krishna Kumar K [11]
Gil-carton D [11]
Isacoff EY [11]
Velikov D [11]
Kang Y [10]
Rao Z [10]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links