Electron Microscopy Data Bank

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primary_citation_author:"Xu C"

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Current Database

Current status

Sample type

Organism

Homo sapiens [167]
Mus musculus [81]
Sus scrofa [79]
Severe acute respiratory syndrome coronavirus [40]
Synthetic construct [23]
Escherichia coli [19]
Human immunodeficiency virus 1 [10]
Thermus virus p74-26 [10]
Saccharomyces cerevisiae [10]
Saccharomyces cerevisiae [10]
Salmonella enterica [10]
Enterovirus a [8]
Equine infectious anemia virus [6]
Lama glama [6]
Primate bocaparvovirus 2 [5]
Zika virus [5]
Rattus norvegicus [4]
Thermoplasma acidophilum [4]
Pseudomonas aeruginosa [4]
Stephanocyclus meneghinianus [4]
Enterovirus d [4]
Salmonella enterica [4]
Shigella flexneri [4]
Severe acute respiratory syndrome coronavirus [3]
Linum usitatissimum [3]
Xenopus laevis [3]
Legionella pneumophila [3]
Bos taurus [3]
Rotavirus a [2]
Taura syndrome virus [2]
Chaetoceros gracilis [2]
(no species) [2]
Acinetobacter baumannii [2]
Human immunodeficiency virus 1 [2]
Primate bocaparvovirus 1 [2]
(no species) [2]
Escherichia coli [2]
Escherichia phage lambda [1]
Equine infectious anemia virus [1]
Saccharomyces cerevisiae [1]
Mycolicibacterium smegmatis [1]
Mycobacterium tuberculosis [1]
Chlorobaculum tepidum [1]
Influenza a virus [1]
(no species) [1]
Amphidinium carterae [1]
Acaryochloris marina [1]
Escherichia coli [1]
Lutzomyia longipalpis [1]
Mycobacterium tuberculosis [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu C [482]
Yang Y [104]
Cong Y [92]
Wang J [92]
Zhang S [87]
Zhang L [86]
Guo R [82]
Song K [82]
Zhou R [81]
Yang F [80]
Jiang Y [78]
Han F [77]
He Z [77]
Hu Y [77]
Hu YQ [77]
Letts JA [77]
Teng F [77]
Tian H [77]
Wu M [77]
Zhou J [77]
Zhou L [77]
Wang Y [70]
Guo RY [68]
He ZX [68]
Xu CY [68]
Liao M [57]
Hong Q [56]
Huang Z [52]
Wang X [52]
Liu J [49]
Zhang C [49]
Zhang X [43]
Li J [42]
Chen X [40]
Liu C [40]
Shin Y-C [39]
Shin YC [39]
Li Z [37]
Bennett CF [36]
Burger N [36]
Djurabekova A [36]
Gygi SP [36]
Latorre-muro P [36]
Paulo JA [36]
Puigserver P [36]
Sharma V [36]
Zdorevskyi O [36]
Zhu Y [35]
Xu S [33]
Han W [31]
Zhang Y [30]
Song Y [29]
Wang H [29]
Pin JP [28]
Wang F [28]
Zhao Q [28]
Zhou Y [28]
Liu Y [27]
Wang S [27]
Feng Y [26]
Zhu X [26]
Zhang J [25]
Zhao S [25]
Koren I [24]
Rondard P [23]
Wang T [23]
Lin C [20]
Liu CX [20]
Yan X [20]
Fang C [19]
Li X [19]
Luo J [19]
Ma R [19]
Meng X [19]
Pan C [19]
Qiao W [19]
Qiu B [19]
Shi X [19]
Tong Y [19]
Shen C [18]
Shen DD [18]
Zhang K [18]
Guo J [17]
Kong L [17]
Raiff A [17]
Yao X [17]
Yin Y [17]
Ding Z [16]
Jin N [16]
Perilla JR [16]
Zuo Q [16]
Bonhomme L [15]
Gao Y [15]
Huang W [15]
Li S [15]
Liang H [15]
Liu YR [15]
Margeat E [15]
Qin J [15]
Quast RB [15]

Author by ORCID

Teng F [77]
Zhou R [77]
Yang F [77]
Zhou L [77]
Hu Y [77]
Wu M [77]
Letts JA [77]
Zhou J [77]
Tian H [77]
Yang Y [77]
Zhang S [77]
Guo R [77]
He Z [77]
Han F [77]
Cong Y [71]
Huang Z [46]
Liu J [42]
Xu C [42]
Zdorevskyi O [36]
Latorre-muro P [36]
Sharma V [36]
Wang Y [34]
Zhang C [34]
Xu C [28]
Hong Q [27]
Koren I [24]
Pin JP [23]
Rondard P [23]
Xu S [21]
Zhu X [19]
Yan X [19]
Meng X [19]
Luo J [19]
Fang C [19]
Zhang Y [18]
Yao X [17]
Xu C [16]
Perilla JR [16]
Margeat E [15]
Quast RB [15]
Gao Y [15]
Xi K [15]
Liu YR [15]
Wang H [14]
Xu C [14]
Liao M [13]
Liu C [11]
Peng C [11]
Yin Y [11]
Wang Y [11]
Zhang K [11]
Zhu Y [11]
Shen JR [11]
Yang Z [10]
Ni T [10]
Monnie C [10]
Glickman MH [10]
Xie Y [10]
Gao H [10]
Nesterova T [10]
Parker MW [10]
Deng Q [10]
Sahu I [10]
Lavillette D [10]
Bocking T [10]
Zhang P [10]
Ouch C [10]
Ahn J [10]
Timms RT [9]
Elledge SJ [9]
Wu L [9]
Li F [9]
Li S [9]
Xu F [9]
Han G [9]
Na M [9]
Li L [8]
Cai G [8]
Wang Y [8]
Zhao S [8]
Wu B [8]
Wang W [8]
Kuang T [8]
Ru W [8]
Chen X [8]
Ordureau A [8]
Song K [8]
Ast T [8]
Diao L [8]
Deng D [8]
Cong Y [8]
Bao L [8]
Raiff A [8]
Egelman EH [8]
Jin M [8]
Bekturova A [8]
Mazor S [8]
Zenge C [8]
Conticello VP [7]
Baker D [7]

Journal

NAT COMMUN [128]
NAT STRUCT MOL BIOL [88]
CELL [57]
NATURE [32]
SCI ADV [19]
SCIENCE [19]
PNAS [17]
MOL CELL [15]
PLOS PATHOG [13]
ELIFE [12]
BIORXIV [11]
J MOL BIOL [10]
NAT CHEM BIOL [10]
CELL RES [9]
COMMUN BIOL [9]
NUCLEIC ACIDS RES [9]
SCI BULL (BEIJING) [8]
J VIROL [7]
TO BE PUBLISHED [7]
J BIOL CHEM [5]
NPJ VIRUSES [5]
STRUCTURE [5]
AM J KIDNEY DIS [4]
EMBO J [4]
CURR BIOL [3]
CURR TOP DEV BIOL [3]
MOL BIOL CELL [3]
NAT CELL BIOL [3]
ORAL SCIENCE AND HOMEOSTATIC MEDICINE [3]
PROC SOC EXP BIOL MED [3]
ANNU REV BIOPHYS [2]
BIOL CELLULAIRE [2]
FEBS LETT [2]
KIDNEY INT [2]
NAT NEUROSCI [2]
PROTEINS [2]
ACTA CRYSTALLOGR D STRUCT BIOL [1]
BIOCHEM BIOPHYS RES COMMUN [1]
CELL REP [1]
J AM CHEM SOC [1]
J BACTERIOL [1]
J INTEGR PLANT BIOL [1]
J MOL CELL BIOL [1]

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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EMPIAR-13642

Release date: June 25, 2026
Dataset size: 24.2 TB
Experiment type: EMDB

Zhao Y, Rai J, Cohen LN, Shu Y, Xu C, Goswami H, Chen X, Jin H, Marchand V, Motorin Y, Ghalei H, Li H

Mol Cell (2026) 86 pp. 1495-1510.e7 [ DOI: 10.1016/j.molcel.2026.03.008 Pubmed: 41928510 ]

Image sets:

unaligned multi-frame micrographs of yeast hypomethylated polysomes at 81K magnification
unaligned multi-frame micrographs of yeast hypomethylated 80S ribosome treated with hygromycin B
unaligned multi-frame micrographs of yeast hypomethylated 80S ribosome bound with TSV-IRES, eEF2, sodarin
unaligned multi-frame micrographs of yeast hypomethylated polysomes at 105K magnification
unaligned multi-frame micrographs of yeast nutrient limiting hypomethylated 80S ribosome

[Show more]

EMD-75700

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3D View

Engineered IscB and wRNA bound to Target ssDNA

CryoEM

Release date: June 3, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 11hr
Q-score: 0.39

Xu C, Yang Q, Niu X, Ke A

Nucleic Acids Res (2026) 54 [ Pubmed: 42328786 DOI: doi:10.1093/nar/gkag607 ]

EMD-75703

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Engineered IscB and wRNA bound to Target ssDNA

CryoEM

Release date: June 3, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 11hu
Q-score: 0.496

Xu C, Yang Q, Niu X, Ke A

Nucleic Acids Res (2026) 54 [ Pubmed: 42328786 DOI: doi:10.1093/nar/gkag607 ]

EMD-75706

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IscB-TID truncated and wRNA bound to Target ssRNA

CryoEM

Release date: June 3, 2026
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 11hx
Q-score: 0.515

Xu C, Yang Q, Niu X, Ke A

Nucleic Acids Res (2026) 54 [ Pubmed: 42328786 DOI: doi:10.1093/nar/gkag607 ]

EMD-75710

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IscB-TID truncated and wRNA bound to Target ssRNA

CryoEM

Release date: June 3, 2026
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 11ic
Q-score: 0.523

Xu C, Yang Q, Niu X, Ke A

Nucleic Acids Res (2026) 54 [ Pubmed: 42328786 DOI: doi:10.1093/nar/gkag607 ]

EMD-47093

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Hypopseudouridylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES and hygromycin B

CryoEM

Release date: May 20, 2026
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 9dov
Q-score: 0.546

Zhao Y, Xu C, Chen X, Jin H, Li H

Sci Adv (2025) 11 pp. eadu0151-eadu0151 [ Pubmed: 40173234 DOI: doi:10.1126/sciadv.adu0151 ]

EMD-47098

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Hypopseudouridylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES and hygromycin B, Class II

CryoEM

Release date: May 20, 2026
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 9dp7
Q-score: 0.5

Zhao Y, Xu C, Chen X, Jin H, Li H

Sci Adv (2025) 11 pp. eadu0151-eadu0151 [ Pubmed: 40173234 DOI: doi:10.1126/sciadv.adu0151 ]

EMD-71745

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Raw data

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Composite map

CryoEM

Release date: May 20, 2026
Resolution: 1.75 Å
EM Method: Single-particle
Fitted PDBs: 9pn5
Q-score: 0.732

Zhao Y, Rai J, Cohen LN, Shu Y, Xu C, Goswami H, Chen X, Jin H, Marchand V, Motorin Y, Ghalei H, Li H

Mol Cell (2026) 86 pp. 1495-1510.e7 [ DOI: doi:10.1016/j.molcel.2026.03.008 Pubmed: 41928510 ]

EMD-64896

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Structure of the ACE2-B0AT1 bound with tryptophan

CryoEM

Release date: May 13, 2026
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 9va1
Q-score: 0.391

Zhang T, Zeng Q, Xu C, Liang H, Zhang S, Wang Z, Yan R

Oral Science and Homeostatic Medicine (2025) 1 pp. 9610033- [ DOI: doi:10.26599/OSHM.2025.9610033 ]

EMD-64897

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Structure of the ACE2-B0AT1 bound with Phenylalanine

CryoEM

Release date: May 13, 2026
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 9va2
Q-score: 0.481

Zhang T, Zeng Q, Xu C, Liang H, Zhang S, Wang Z, Yan R

Oral Science and Homeostatic Medicine (2025) 1 pp. 9610033- [ DOI: doi:10.26599/OSHM.2025.9610033 ]

Sort by: Download

Showing 1 - 10 of 487. Page 1 of 49

Display:

Statistics

Download

Select database:

EMDB [481]
EMPIAR [6]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [167]
Mus musculus [81]
Sus scrofa [79]
Severe acute respiratory syndrome coronavirus [40]
Synthetic construct [23]
Escherichia coli [19]
Human immunodeficiency virus 1 [10]
Thermus virus p74-26 [10]
Saccharomyces cerevisiae [10]
Saccharomyces cerevisiae [10]
Salmonella enterica [10]
Enterovirus a [8]
Equine infectious anemia virus [6]
Lama glama [6]
Primate bocaparvovirus 2 [5]
Zika virus [5]
Rattus norvegicus [4]
Thermoplasma acidophilum [4]
Pseudomonas aeruginosa [4]
Stephanocyclus meneghinianus [4]
Enterovirus d [4]
Salmonella enterica [4]
Shigella flexneri [4]
Severe acute respiratory syndrome coronavirus [3]
Linum usitatissimum [3]
Xenopus laevis [3]
Legionella pneumophila [3]
Bos taurus [3]
Rotavirus a [2]
Taura syndrome virus [2]
Chaetoceros gracilis [2]
(no species) [2]
Acinetobacter baumannii [2]
Human immunodeficiency virus 1 [2]
Primate bocaparvovirus 1 [2]
(no species) [2]
Escherichia coli [2]
Escherichia phage lambda [1]
Equine infectious anemia virus [1]
Saccharomyces cerevisiae [1]
Mycolicibacterium smegmatis [1]
Mycobacterium tuberculosis [1]
Chlorobaculum tepidum [1]
Influenza a virus [1]
(no species) [1]
Amphidinium carterae [1]
Acaryochloris marina [1]
Escherichia coli [1]
Lutzomyia longipalpis [1]
Mycobacterium tuberculosis [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Xu C [482]
Yang Y [104]
Cong Y [92]
Wang J [92]
Zhang S [87]
Zhang L [86]
Guo R [82]
Song K [82]
Zhou R [81]
Yang F [80]
Jiang Y [78]
Han F [77]
He Z [77]
Hu Y [77]
Hu YQ [77]
Letts JA [77]
Teng F [77]
Tian H [77]
Wu M [77]
Zhou J [77]
Zhou L [77]
Wang Y [70]
Guo RY [68]
He ZX [68]
Xu CY [68]
Liao M [57]
Hong Q [56]
Huang Z [52]
Wang X [52]
Liu J [49]
Zhang C [49]
Zhang X [43]
Li J [42]
Chen X [40]
Liu C [40]
Shin Y-C [39]
Shin YC [39]
Li Z [37]
Bennett CF [36]
Burger N [36]
Djurabekova A [36]
Gygi SP [36]
Latorre-muro P [36]
Paulo JA [36]
Puigserver P [36]
Sharma V [36]
Zdorevskyi O [36]
Zhu Y [35]
Xu S [33]
Han W [31]
Zhang Y [30]
Song Y [29]
Wang H [29]
Pin JP [28]
Wang F [28]
Zhao Q [28]
Zhou Y [28]
Liu Y [27]
Wang S [27]
Feng Y [26]
Zhu X [26]
Zhang J [25]
Zhao S [25]
Koren I [24]
Rondard P [23]
Wang T [23]
Lin C [20]
Liu CX [20]
Yan X [20]
Fang C [19]
Li X [19]
Luo J [19]
Ma R [19]
Meng X [19]
Pan C [19]
Qiao W [19]
Qiu B [19]
Shi X [19]
Tong Y [19]
Shen C [18]
Shen DD [18]
Zhang K [18]
Guo J [17]
Kong L [17]
Raiff A [17]
Yao X [17]
Yin Y [17]
Ding Z [16]
Jin N [16]
Perilla JR [16]
Zuo Q [16]
Bonhomme L [15]
Gao Y [15]
Huang W [15]
Li S [15]
Liang H [15]
Liu YR [15]
Margeat E [15]
Qin J [15]
Quast RB [15]

Author by ORCID

Teng F [77]
Zhou R [77]
Yang F [77]
Zhou L [77]
Hu Y [77]
Wu M [77]
Letts JA [77]
Zhou J [77]
Tian H [77]
Yang Y [77]
Zhang S [77]
Guo R [77]
He Z [77]
Han F [77]
Cong Y [71]
Huang Z [46]
Liu J [42]
Xu C [42]
Zdorevskyi O [36]
Latorre-muro P [36]
Sharma V [36]
Wang Y [34]
Zhang C [34]
Xu C [28]
Hong Q [27]
Koren I [24]
Pin JP [23]
Rondard P [23]
Xu S [21]
Zhu X [19]
Yan X [19]
Meng X [19]
Luo J [19]
Fang C [19]
Zhang Y [18]
Yao X [17]
Xu C [16]
Perilla JR [16]
Margeat E [15]
Quast RB [15]
Gao Y [15]
Xi K [15]
Liu YR [15]
Wang H [14]
Xu C [14]
Liao M [13]
Liu C [11]
Peng C [11]
Yin Y [11]
Wang Y [11]
Zhang K [11]
Zhu Y [11]
Shen JR [11]
Yang Z [10]
Ni T [10]
Monnie C [10]
Glickman MH [10]
Xie Y [10]
Gao H [10]
Nesterova T [10]
Parker MW [10]
Deng Q [10]
Sahu I [10]
Lavillette D [10]
Bocking T [10]
Zhang P [10]
Ouch C [10]
Ahn J [10]
Timms RT [9]
Elledge SJ [9]
Wu L [9]
Li F [9]
Li S [9]
Xu F [9]
Han G [9]
Na M [9]
Li L [8]
Cai G [8]
Wang Y [8]
Zhao S [8]
Wu B [8]
Wang W [8]
Kuang T [8]
Ru W [8]
Chen X [8]
Ordureau A [8]
Song K [8]
Ast T [8]
Diao L [8]
Deng D [8]
Cong Y [8]
Bao L [8]
Raiff A [8]
Egelman EH [8]
Jin M [8]
Bekturova A [8]
Mazor S [8]
Zenge C [8]
Conticello VP [7]
Baker D [7]

Journal

NAT COMMUN [128]
NAT STRUCT MOL BIOL [88]
CELL [57]
NATURE [32]
SCI ADV [19]
SCIENCE [19]
PNAS [17]
MOL CELL [15]
PLOS PATHOG [13]
ELIFE [12]
BIORXIV [11]
J MOL BIOL [10]
NAT CHEM BIOL [10]
CELL RES [9]
COMMUN BIOL [9]
NUCLEIC ACIDS RES [9]
SCI BULL (BEIJING) [8]
J VIROL [7]
TO BE PUBLISHED [7]
J BIOL CHEM [5]
NPJ VIRUSES [5]
STRUCTURE [5]
AM J KIDNEY DIS [4]
EMBO J [4]
CURR BIOL [3]
CURR TOP DEV BIOL [3]
MOL BIOL CELL [3]
NAT CELL BIOL [3]
ORAL SCIENCE AND HOMEOSTATIC MEDICINE [3]
PROC SOC EXP BIOL MED [3]
ANNU REV BIOPHYS [2]
BIOL CELLULAIRE [2]
FEBS LETT [2]
KIDNEY INT [2]
NAT NEUROSCI [2]
PROTEINS [2]
ACTA CRYSTALLOGR D STRUCT BIOL [1]
BIOCHEM BIOPHYS RES COMMUN [1]
CELL REP [1]
J AM CHEM SOC [1]
J BACTERIOL [1]
J INTEGR PLANT BIOL [1]
J MOL CELL BIOL [1]

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links