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primary_citation_author:"Shiriaev DI"

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Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Complex [5]
  • Ligand [5]
  • Protein [5]
  • RNA [5]

Organism

  • Escherichia coli [4]
  • Saccharomyces cerevisiae [2]
  • Homo sapiens [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [5]

Model molecular weight

  • 1-2 MDa [1]
  • 2-5 MDa [4]

Release Date

  • 2020 [5]

Author by name

  • Bogdanov AA [5]
  • Dontsova OA [5]
  • Komarova ES [5]
  • Osterman IA [5]
  • Polikanov YS [5]
  • Sergiev PV [5]
  • Shiriaev DI [5]
  • Kasatsky P [3]
  • Konevega AL [3]
  • Myasnikov AG [3]
  • Paleskava A [3]
  • Pichkur EB [3]
  • Tereshchenkov AG [3]
  • Beckmann R [2]
  • Biryukov MV [2]
  • Buschauer R [2]
  • Cheng J [2]
  • Dmitriev SE [2]
  • Lashkevich KA [2]
  • Leyn SA [2]
  • Lukianov DA [2]
  • Maviza TP [2]
  • Osterman AL [2]
  • Polshakov VI [2]
  • Skvortsov DA [2]
  • Tashlitsky VN [2]
  • Wieland M [2]
  • Wilson DN [2]
  • Zakalyukina YV [2]
  • Zlamal JE [2]

Author by ORCID

  • Polikanov YS [5]
  • Tereshchenkov AG [3]
  • Konevega AL [3]
  • Osterman IA [2]
  • Maviza TP [2]
  • Sergiev PV [2]
  • Zakalyukina YV [2]
  • Dmitriev SE [2]
  • Polshakov VI [2]
  • Biryukov MV [2]
  • Buschauer R [2]
  • Wieland M [2]
  • Komarova ES [2]
  • Shiriaev DI [2]
  • Leyn SA [2]
  • Lukianov DA [2]
  • Lashkevich KA [2]
  • Wilson DN [2]
  • Tashlitsky VN [2]
  • Cheng J [2]

Journal

  • RNA [3]
  • NAT CHEM BIOL [2]

Software

  • RELION [4]
  • GCTF [3]
  • CISTEM [2]

Microscope

  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • FEI FALCON II 4K X 4K [5]

External links

  • AlphaFold DB [5]
  • ChEBI [5]
  • ChEMBL [5]
  • Complex Portal [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
  • PDB [5]
  • PDBe-Kb [5]
  • Pfam [5]
  • UniProt [5]
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EMD-10656
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3D View
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA iMet focused classification .
CryoEM
Release date: Nov. 4, 2020
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 6xza
Q-score: 0.412

Pichkur EB, Paleskava A, Tereshchenkov AG, Kasatsky P, Komarova ES, Shiriaev DI, Bogdanov AA, Dontsova OA, Osterman IA, Sergiev PV, Polikanov YS, Myasnikov AG, Konevega AL

RNA (2020) 26 pp. 715-723 [ Pubmed: 32144191 DOI: doi:10.1261/rna.073817.119 ]

EMD-10657
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3D View
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA Phe and deacylated tRNA iMet focused classification .
CryoEM
Release date: Nov. 4, 2020
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 6xzb
Q-score: 0.432

Pichkur EB, Paleskava A, Tereshchenkov AG, Kasatsky P, Komarova ES, Shiriaev DI, Bogdanov AA, Dontsova OA, Osterman IA, Sergiev PV, Polikanov YS, Myasnikov AG, Konevega AL

RNA (2020) 26 pp. 715-723 [ Pubmed: 32144191 DOI: doi:10.1261/rna.073817.119 ]

EMD-10655
Download Map
3D View
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA Phe and deacylated tRNA iMet .
CryoEM
Release date: July 22, 2020
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 6xz7
Q-score: 0.643

Pichkur EB, Paleskava A, Tereshchenkov AG, Kasatsky P, Komarova ES, Shiriaev DI, Bogdanov AA, Dontsova OA, Osterman IA, Sergiev PV, Polikanov YS, Myasnikov AG, Konevega AL

RNA (2020) 26 pp. 715-723 [ Pubmed: 32144191 DOI: doi:10.1261/rna.073817.119 ]

EMD-10709
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3D View
Tetracenomycin X bound to the human ribosome
CryoEM
Release date: July 8, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6y6x
Q-score: 0.546

Osterman IA, Wieland M, Maviza TP, Lashkevich KA, Lukianov DA, Komarova ES, Zakalyukina YV, Buschauer R, Shiriaev DI, Leyn SA, Zlamal JE, Biryukov MV, Skvortsov DA, Tashlitsky VN, Polshakov VI, Cheng J, Polikanov YS, Bogdanov AA, Osterman AL, Dmitriev SE, Beckmann R, Dontsova OA, Wilson DN, Sergiev PV

Nat Chem Biol (2020) 16 pp. 1071-1077 [ DOI: doi:10.1038/s41589-020-0578-x Pubmed: 32601485 ]

EMD-10705
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3D View
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
CryoEM
Release date: July 1, 2020
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 6y69
Q-score: 0.486

Osterman IA, Wieland M, Maviza TP, Lashkevich KA, Lukianov DA, Komarova ES, Zakalyukina YV, Buschauer R, Shiriaev DI, Leyn SA, Zlamal JE, Biryukov MV, Skvortsov DA, Tashlitsky VN, Polshakov VI, Cheng J, Polikanov YS, Bogdanov AA, Osterman AL, Dmitriev SE, Beckmann R, Dontsova OA, Wilson DN, Sergiev PV

Nat Chem Biol (2020) 16 pp. 1071-1077 [ DOI: doi:10.1038/s41589-020-0578-x Pubmed: 32601485 ]

Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Complex [5]
  • Ligand [5]
  • Protein [5]
  • RNA [5]

Organism

  • Escherichia coli [4]
  • Saccharomyces cerevisiae [2]
  • Homo sapiens [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [5]

Model molecular weight

  • 1-2 MDa [1]
  • 2-5 MDa [4]

Release Date

  • 2020 [5]

Author by name

  • Bogdanov AA [5]
  • Dontsova OA [5]
  • Komarova ES [5]
  • Osterman IA [5]
  • Polikanov YS [5]
  • Sergiev PV [5]
  • Shiriaev DI [5]
  • Kasatsky P [3]
  • Konevega AL [3]
  • Myasnikov AG [3]
  • Paleskava A [3]
  • Pichkur EB [3]
  • Tereshchenkov AG [3]
  • Beckmann R [2]
  • Biryukov MV [2]
  • Buschauer R [2]
  • Cheng J [2]
  • Dmitriev SE [2]
  • Lashkevich KA [2]
  • Leyn SA [2]
  • Lukianov DA [2]
  • Maviza TP [2]
  • Osterman AL [2]
  • Polshakov VI [2]
  • Skvortsov DA [2]
  • Tashlitsky VN [2]
  • Wieland M [2]
  • Wilson DN [2]
  • Zakalyukina YV [2]
  • Zlamal JE [2]

Author by ORCID

  • Polikanov YS [5]
  • Tereshchenkov AG [3]
  • Konevega AL [3]
  • Osterman IA [2]
  • Maviza TP [2]
  • Sergiev PV [2]
  • Zakalyukina YV [2]
  • Dmitriev SE [2]
  • Polshakov VI [2]
  • Biryukov MV [2]
  • Buschauer R [2]
  • Wieland M [2]
  • Komarova ES [2]
  • Shiriaev DI [2]
  • Leyn SA [2]
  • Lukianov DA [2]
  • Lashkevich KA [2]
  • Wilson DN [2]
  • Tashlitsky VN [2]
  • Cheng J [2]

Journal

  • RNA [3]
  • NAT CHEM BIOL [2]

Software

  • RELION [4]
  • GCTF [3]
  • CISTEM [2]

Microscope

  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • FEI FALCON II 4K X 4K [5]

External links

  • AlphaFold DB [5]
  • ChEBI [5]
  • ChEMBL [5]
  • Complex Portal [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
  • PDB [5]
  • PDBe-Kb [5]
  • Pfam [5]
  • UniProt [5]