Electron Microscopy Data Bank

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primary_citation_author:"Shi Y"

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Current Database

Current status

Sample type

Organism

Homo sapiens [320]
Severe acute respiratory syndrome coronavirus [64]
Saccharomyces cerevisiae [58]
Mus musculus [32]
Bacillus subtilis [27]
Lama glama [25]
Synthetic construct [23]
Saccharomyces cerevisiae [17]
Influenza a virus [16]
Monkeypox virus [15]
Xenopus laevis [15]
Unidentified adenovirus [12]
Zaire ebolavirus [12]
Mycolicibacterium smegmatis [9]
Toxoplasma gondii [9]
Schizosaccharomyces pombe [9]
African swine fever virus [8]
Machupo virus [8]
Influenza d virus [8]
Aequorea victoria [8]
Enterovirus b [7]
Roseiflexus castenholzii [6]
Influenza a virus [6]
Escherichia coli [6]
Severe acute respiratory syndrome coronavirus [5]
Pseudomonas aeruginosa [4]
Nipah virus [4]
Drosophila melanogaster [4]
Lassa mammarenavirus [3]
Middle east respiratory syndrome-related coronavirus [3]
Wuhan asiatic toad influenza virus [3]
Thermus thermophilus [3]
Thermus thermophilus [3]
Caenorhabditis elegans [3]
Macaca mulatta [3]
(no species) [2]
Vaccinia virus [2]
Human mastadenovirus c [2]
Semliki forest virus [2]
Human coronavirus 229e [2]
Human respiratory syncytial virus [2]
Pseudomonas phage jbd30 [2]
Mycolicibacterium smegmatis [2]
Lachnospiraceae bacterium [2]
Orthopneumovirus hominis [2]
Pseudomonas aeruginosa [2]
Wuhan spiny eel influenza virus [2]
Severe acute respiratory syndrome coronavirus [2]
Thermus thermophilus [2]
Vicugna pacos [2]
Severe acute respiratory syndrome coronavirus [2]
(no species) [2]
Arabidopsis thaliana [2]
Influenza a virus [2]
Moraxella bovoculi [2]
Escherichia coli [2]
Influenza a virus [2]
Klebsiella pneumoniae [2]
Vaccinia virus [2]
Bos taurus [2]
Oryctolagus cuniculus [2]
Human herpesvirus 3 [1]
Suid alphaherpesvirus 1 [1]
Simian virus 40 [1]
Unidentified influenza virus [1]
Roseiflexus castenholzii [1]
Staphylococcus aureus [1]
Alphainfluenzavirus influenzae [1]
Simian virus 40 [1]
Severe acute respiratory syndrome coronavirus [1]
Emiliania huxleyi [1]
Pseudomonas phage d3 [1]
Pseudomonas virus 73 [1]
Chikungunya virus [1]
Acinetobacter baumannii [1]
Alphainfluenzavirus influenzae [1]
Saccharomyces bayanus [1]
Zika virus [1]
Spbetavirus spbeta [1]
Salmonella enterica [1]
(no species) [1]
Equus caballus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Shi Y [685]
Gao GF [116]
Qi J [107]
Yan C [102]
Zhang Y [88]
Lei J [83]
Wang J [80]
Zhang W [79]
Zhang X [75]
Scheres SHW [68]
Peng Q [67]
Zhou Q [67]
Li J [65]
Goedert M [63]
Wang P [60]
Wang Y [59]
Chen X [56]
Xie Y [56]
Murzin AG [54]
Ghetti B [53]
Huang W [53]
Sali A [53]
Wan R [53]
Chait BT [51]
Liu Y [50]
Fernandez-martinez J [49]
Rout MP [49]
Wang H [49]
Zhan X [49]
Bai R [48]
Echeverria I [48]
Li Z [48]
Li Y [46]
Yang Y [44]
Sun J [43]
Wang R [43]
Hasegawa M [42]
Peng R [42]
Xiang Y [41]
Liu S [40]
Garringer HJ [39]
Vidal R [39]
Wang X [39]
Huang G [38]
Wang M [38]
Guo H [37]
Lu Y [36]
Singh D [36]
Suslov S [36]
Villa E [36]
Li S [35]
Liu H [35]
Yang X [35]
Yoshida M [35]
Sang Z [34]
Su Q [34]
Taylor DJ [34]
Guo Q [33]
Van Eeuwen T [33]
Zhou J [32]
Duquette M [31]
Hu Y [31]
Hutchings J [31]
Molloy K [31]
Shaikh F [31]
Soni N [31]
Li F [30]
Murayama S [30]
Sun H [30]
Wang L [30]
Bi Y [29]
Wu Z [29]
Chen Y [28]
Huang M [28]
Kotecha A [28]
Schneidman-duhovny D [28]
Tarutani A [28]
Gao Y [27]
Huang B [27]
Li C [27]
Song H [27]
Xu Y [27]
Yang H [27]
Zhao Y [27]
Rao Z [26]
Yan J [26]
Chai Y [25]
Wang Q [25]
Wu J [25]
Xu Q [25]
Zhang B [25]
Zhang J [25]
Kakita A [24]
Kuai L [24]
Lashley T [24]
Shi YG [24]
Wu Y [24]
Xie X [24]
Yang R [24]
Yuan B [24]

Author by ORCID

Shi Y [132]
Yan C [80]
Shi Y [80]
Gao GF [80]
Shi Y [71]
Qi J [48]
Echeverria I [47]
Lei J [43]
Scheres SHW [36]
Zhan X [36]
Peng R [34]
Soni N [31]
Guo Q [31]
Duquette M [31]
Garringer HJ [28]
Goedert M [28]
Vidal R [28]
Shi Y [26]
Xie Y [24]
Song H [24]
Rao Z [22]
Gao Y [22]
Yang H [22]
Gao H [22]
Li F [22]
Xu Q [22]
Shi Z [22]
Yang R [22]
Kotecha A [21]
Yang Y [21]
Ghetti B [20]
Zhou Q [20]
Tarutani A [19]
Tian WX [18]
Huang J [18]
Xiang Y [18]
Bai R [17]
Zhou R [17]
Wan R [17]
Zhang W [16]
Shi Y [16]
Fernandez-martinez J [16]
Lashley T [15]
Hasegawa M [15]
Ryskeldi-falcon B [15]
Kuai L [15]
Huang G [15]
Hallinan GI [14]
Yang X [14]
Bi Y [14]
Yan R [14]
Kovacs GG [14]
Zhang Y [14]
Guo H [13]
Guo X [13]
Zhou J [13]
Kong F [13]
Zeng C [13]
Tang J [13]
Zhu P [13]
Wu J [13]
Xie Y [13]
Guo Y [13]
Liu F [13]
Lou Z [13]
Zhou J [13]
Cheng T [13]
Tian L [13]
Ge X [13]
Qi J [13]
Yang Q [13]
Cao Y [12]
Hao X [12]
Jin R [12]
Jian F [12]
Kametani F [12]
Xie XS [12]
Chen X [12]
Wang Y [12]
Liu J [12]
Huang W [12]
Zhang Z [12]
Wang J [12]
Zhang X [12]
Shen Z [12]
Wang X [12]
Du S [12]
Xiao J [12]
Yang S [12]
Ikeuchi T [11]
Li Y [11]
Wang P [11]
Oyanagi K [10]
Tubiana J [10]
Sasaki R [10]
Sun J [10]
Sang Z [10]
Huang X [10]
Peng Q [10]
Morimoto S [10]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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EMD-65363

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CDK11B ternary complex bound to AT7519

CryoEM

Release date: July 15, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9vuh
Q-score: 0.475

Wang L, Yang Y, Zheng Z, Zhan X, Shi Y

To Be Published

EMD-66046

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ALECT2 type Ia filament from renal biopsy tissue of an individual with ALECT2 amyloidosis

CryoEM

Release date: June 3, 2026
Resolution: 1.96 Å
EM Method: Helical reconstruction
Fitted PDBs: 9wl5
Q-score: 0.708

Zheng JL, Zheng YX, Chen K, Wang S, Liang JW, Wang SX, Yang L, Shi Y

Nat Commun (2026) [ Pubmed: 42173881 DOI: doi:10.1038/s41467-026-73602-2 ]

EMD-66047

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ALECT2 type Ib filament from renal biopsy tissue of an individual with ALECT2 amyloidosis

CryoEM

Release date: June 3, 2026
Resolution: 1.95 Å
EM Method: Helical reconstruction
Fitted PDBs: 9wl6
Q-score: 0.729

Zheng JL, Zheng YX, Chen K, Wang S, Liang JW, Wang SX, Yang L, Shi Y

Nat Commun (2026) [ Pubmed: 42173881 DOI: doi:10.1038/s41467-026-73602-2 ]

EMD-66048

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ALECT2 type IIa filament from renal biopsy tissue of an individual with ALECT2 amyloidosis

CryoEM

Release date: June 3, 2026
Resolution: 2.93 Å
EM Method: Helical reconstruction
Fitted PDBs: 9wl7
Q-score: 0.548

Zheng JL, Zheng YX, Chen K, Wang S, Liang JW, Wang SX, Yang L, Shi Y

Nat Commun (2026) [ Pubmed: 42173881 DOI: doi:10.1038/s41467-026-73602-2 ]

EMD-66049

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ALECT2 type IIb filament from renal biopsy tissue of an individual with ALECT2 amyloidosis

CryoEM

Release date: June 3, 2026
Resolution: 3.09 Å
EM Method: Helical reconstruction
Fitted PDBs: 9wl8
Q-score: 0.536

Zheng JL, Zheng YX, Chen K, Wang S, Liang JW, Wang SX, Yang L, Shi Y

Nat Commun (2026) [ Pubmed: 42173881 DOI: doi:10.1038/s41467-026-73602-2 ]

EMD-66050

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ALECT2 type III filament from renal biopsy tissue of an individual with ALECT2 amyloidosis

CryoEM

Release date: June 3, 2026
Resolution: 3.05 Å
EM Method: Helical reconstruction
Fitted PDBs: 9wl9
Q-score: 0.558

Zheng JL, Zheng YX, Chen K, Wang S, Liang JW, Wang SX, Yang L, Shi Y

Nat Commun (2026) [ Pubmed: 42173881 DOI: doi:10.1038/s41467-026-73602-2 ]

EMD-72377

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Staphylococcal Enterotoxin C in complex with NB C107 and NB C112

CryoEM

Release date: May 6, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9xzx
Q-score: 0.326

Kim YJJ, Walton NR, Huang W, Lee M, Xiang Y, Sang Z, Sussman C, Moore SKL, Taylor DJ, Chen K, Hook JL, McCormick JK, Shi Y

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-73120-1 Pubmed: 42161902 ]

EMD-65025

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Structure of hTRPC3 solubilized with 4F peptide at 2.72 angstrom

CryoEM

Release date: April 22, 2026
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 9vfi
Q-score: 0.551

Zang J, Shi Y, Tao W, Liu X, Guo W, Chen L

J Mol Biol (2025) 437 pp. 169467-169467 [ Pubmed: 41061950 DOI: doi:10.1016/j.jmb.2025.169467 ]

EMD-73991

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Cryo-EM structure of human apo mTORC2

CryoEM

Release date: April 15, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9zbj
Q-score: 0.384

Taylor MS, Chen M, Hancock M, Wranik M, Miller BD, O'Meara TR, Palanski BA, Ficarro SB, Groendyke BJ, Xiang Y, Kondo KT, Linde-Garelli KY, Lee MJ, Mondal D, Freund D, Congreve S, Matas K, Hennink M, Xibinaku K, Valenstein ML, van Eeuwen T, Marto JA, Sali A, Shi Y, Gray NS, Sabatini DM, Chu N, Rogala KB, Cole PA

Science (2026) 391 pp. eadv7111-eadv7111 [ DOI: doi:10.1126/science.adv7111 Pubmed: 41308123 ]

EMD-73992

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mTORC2 in complex with Akt1

CryoEM

Release date: April 15, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9zbk
Q-score: 0.443

Science (2026) 391 pp. eadv7111-eadv7111 [ DOI: doi:10.1126/science.adv7111 Pubmed: 41308123 ]

Sort by: Download

Showing 1 - 10 of 689. Page 1 of 69

Display:

Statistics

Download

Select database:

EMDB [662]
EMPIAR [27]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [320]
Severe acute respiratory syndrome coronavirus [64]
Saccharomyces cerevisiae [58]
Mus musculus [32]
Bacillus subtilis [27]
Lama glama [25]
Synthetic construct [23]
Saccharomyces cerevisiae [17]
Influenza a virus [16]
Monkeypox virus [15]
Xenopus laevis [15]
Unidentified adenovirus [12]
Zaire ebolavirus [12]
Mycolicibacterium smegmatis [9]
Toxoplasma gondii [9]
Schizosaccharomyces pombe [9]
African swine fever virus [8]
Machupo virus [8]
Influenza d virus [8]
Aequorea victoria [8]
Enterovirus b [7]
Roseiflexus castenholzii [6]
Influenza a virus [6]
Escherichia coli [6]
Severe acute respiratory syndrome coronavirus [5]
Pseudomonas aeruginosa [4]
Nipah virus [4]
Drosophila melanogaster [4]
Lassa mammarenavirus [3]
Middle east respiratory syndrome-related coronavirus [3]
Wuhan asiatic toad influenza virus [3]
Thermus thermophilus [3]
Thermus thermophilus [3]
Caenorhabditis elegans [3]
Macaca mulatta [3]
(no species) [2]
Vaccinia virus [2]
Human mastadenovirus c [2]
Semliki forest virus [2]
Human coronavirus 229e [2]
Human respiratory syncytial virus [2]
Pseudomonas phage jbd30 [2]
Mycolicibacterium smegmatis [2]
Lachnospiraceae bacterium [2]
Orthopneumovirus hominis [2]
Pseudomonas aeruginosa [2]
Wuhan spiny eel influenza virus [2]
Severe acute respiratory syndrome coronavirus [2]
Thermus thermophilus [2]
Vicugna pacos [2]
Severe acute respiratory syndrome coronavirus [2]
(no species) [2]
Arabidopsis thaliana [2]
Influenza a virus [2]
Moraxella bovoculi [2]
Escherichia coli [2]
Influenza a virus [2]
Klebsiella pneumoniae [2]
Vaccinia virus [2]
Bos taurus [2]
Oryctolagus cuniculus [2]
Human herpesvirus 3 [1]
Suid alphaherpesvirus 1 [1]
Simian virus 40 [1]
Unidentified influenza virus [1]
Roseiflexus castenholzii [1]
Staphylococcus aureus [1]
Alphainfluenzavirus influenzae [1]
Simian virus 40 [1]
Severe acute respiratory syndrome coronavirus [1]
Emiliania huxleyi [1]
Pseudomonas phage d3 [1]
Pseudomonas virus 73 [1]
Chikungunya virus [1]
Acinetobacter baumannii [1]
Alphainfluenzavirus influenzae [1]
Saccharomyces bayanus [1]
Zika virus [1]
Spbetavirus spbeta [1]
Salmonella enterica [1]
(no species) [1]
Equus caballus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Shi Y [685]
Gao GF [116]
Qi J [107]
Yan C [102]
Zhang Y [88]
Lei J [83]
Wang J [80]
Zhang W [79]
Zhang X [75]
Scheres SHW [68]
Peng Q [67]
Zhou Q [67]
Li J [65]
Goedert M [63]
Wang P [60]
Wang Y [59]
Chen X [56]
Xie Y [56]
Murzin AG [54]
Ghetti B [53]
Huang W [53]
Sali A [53]
Wan R [53]
Chait BT [51]
Liu Y [50]
Fernandez-martinez J [49]
Rout MP [49]
Wang H [49]
Zhan X [49]
Bai R [48]
Echeverria I [48]
Li Z [48]
Li Y [46]
Yang Y [44]
Sun J [43]
Wang R [43]
Hasegawa M [42]
Peng R [42]
Xiang Y [41]
Liu S [40]
Garringer HJ [39]
Vidal R [39]
Wang X [39]
Huang G [38]
Wang M [38]
Guo H [37]
Lu Y [36]
Singh D [36]
Suslov S [36]
Villa E [36]
Li S [35]
Liu H [35]
Yang X [35]
Yoshida M [35]
Sang Z [34]
Su Q [34]
Taylor DJ [34]
Guo Q [33]
Van Eeuwen T [33]
Zhou J [32]
Duquette M [31]
Hu Y [31]
Hutchings J [31]
Molloy K [31]
Shaikh F [31]
Soni N [31]
Li F [30]
Murayama S [30]
Sun H [30]
Wang L [30]
Bi Y [29]
Wu Z [29]
Chen Y [28]
Huang M [28]
Kotecha A [28]
Schneidman-duhovny D [28]
Tarutani A [28]
Gao Y [27]
Huang B [27]
Li C [27]
Song H [27]
Xu Y [27]
Yang H [27]
Zhao Y [27]
Rao Z [26]
Yan J [26]
Chai Y [25]
Wang Q [25]
Wu J [25]
Xu Q [25]
Zhang B [25]
Zhang J [25]
Kakita A [24]
Kuai L [24]
Lashley T [24]
Shi YG [24]
Wu Y [24]
Xie X [24]
Yang R [24]
Yuan B [24]

Author by ORCID

Shi Y [132]
Yan C [80]
Shi Y [80]
Gao GF [80]
Shi Y [71]
Qi J [48]
Echeverria I [47]
Lei J [43]
Scheres SHW [36]
Zhan X [36]
Peng R [34]
Soni N [31]
Guo Q [31]
Duquette M [31]
Garringer HJ [28]
Goedert M [28]
Vidal R [28]
Shi Y [26]
Xie Y [24]
Song H [24]
Rao Z [22]
Gao Y [22]
Yang H [22]
Gao H [22]
Li F [22]
Xu Q [22]
Shi Z [22]
Yang R [22]
Kotecha A [21]
Yang Y [21]
Ghetti B [20]
Zhou Q [20]
Tarutani A [19]
Tian WX [18]
Huang J [18]
Xiang Y [18]
Bai R [17]
Zhou R [17]
Wan R [17]
Zhang W [16]
Shi Y [16]
Fernandez-martinez J [16]
Lashley T [15]
Hasegawa M [15]
Ryskeldi-falcon B [15]
Kuai L [15]
Huang G [15]
Hallinan GI [14]
Yang X [14]
Bi Y [14]
Yan R [14]
Kovacs GG [14]
Zhang Y [14]
Guo H [13]
Guo X [13]
Zhou J [13]
Kong F [13]
Zeng C [13]
Tang J [13]
Zhu P [13]
Wu J [13]
Xie Y [13]
Guo Y [13]
Liu F [13]
Lou Z [13]
Zhou J [13]
Cheng T [13]
Tian L [13]
Ge X [13]
Qi J [13]
Yang Q [13]
Cao Y [12]
Hao X [12]
Jin R [12]
Jian F [12]
Kametani F [12]
Xie XS [12]
Chen X [12]
Wang Y [12]
Liu J [12]
Huang W [12]
Zhang Z [12]
Wang J [12]
Zhang X [12]
Shen Z [12]
Wang X [12]
Du S [12]
Xiao J [12]
Yang S [12]
Ikeuchi T [11]
Li Y [11]
Wang P [11]
Oyanagi K [10]
Tubiana J [10]
Sasaki R [10]
Sun J [10]
Sang Z [10]
Huang X [10]
Peng Q [10]
Morimoto S [10]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links