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primary_citation_author:"Shan X"

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Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Protein [6]
  • DNA [2]
  • Ligand [2]

Organism

  • Acinetobacter baumannii [4]
  • Synthetic construct [2]
  • Homo sapiens [2]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [2]

Release Date

  • 2026 [1]
  • 2025 [4]
  • 2024 [1]

Author by name

  • Shan X [6]
  • Li J [5]
  • Chen J [4]
  • Chen M [4]
  • Dong J [4]
  • Hou Y [4]
  • Huang P [4]
  • Ke S [4]
  • Kong J [4]
  • Kong JP [4]
  • Li K [4]
  • Li Z [4]
  • Li ZX [4]
  • Liu J [4]
  • Lu M [4]
  • Makanyire T [4]
  • Shen H [4]
  • Sun H [4]
  • Sun X [4]
  • Wu W [4]
  • Xia S [4]
  • Xiao Y [4]
  • Xiao YB [4]
  • Yang P [4]
  • Zhou Z [4]
  • Zhu R [4]
  • Zhuo Z [4]
  • Ke SY [3]
  • Wu WQ [3]
  • Ma J [2]
  • Ren M [2]
  • Zhou C [2]
  • Fan Y [1]
  • Gut F [1]
  • Hopfner K-P [1]
  • Hopfner KP [1]
  • Ji G [1]
  • Ji GY [1]
  • Li H [1]
  • Li HT [1]
  • Likhodeeva M [1]
  • Shan XJ [1]
  • Yikilmazsoy A [1]
  • Zhou CZ [1]
  • Zhou Y [1]

Author by ORCID

  • Kong J [4]
  • Li Z [4]
  • Shen H [4]
  • Chen M [4]
  • Xiao Y [4]
  • Zhou C [2]
  • Li H [1]
  • Hopfner KP [1]
  • Likhodeeva M [1]
  • Ren M [1]
  • Yikilmazsoy A [1]

Journal

  • NAT COMMUN [5]
  • PROTEIN CELL [1]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [5]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • FEI FALCON IV 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [6]
  • Gene Ontology [6]
  • PDB [6]
  • PDBe-Kb [6]
  • UniProt [6]
  • InterPro [5]
  • ChEBI [2]
  • ChEMBL [2]
  • Complex Portal [2]
  • Pfam [2]
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EMD-64640
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3D View
Cryo-EM structure of the nucleosome core particle with site-specific DNA-histone crosslinking
CryoEM
Release date: May 6, 2026
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 9uz7
Q-score: 0.464

Shan X, Ji G, Li J, Ren M, Ma J, Zhou Y, Li H, Zhou C

Protein Cell (2026) 17 pp. 476-482 [ DOI: doi:10.1093/procel/pwaf094 Pubmed: 41206067 ]

EMD-60393
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3D View
Cryo-EM structure of AbCapV filemant bound with 3 ,3 -cGAMP with extra phospholipid density
CryoEM
Release date: Nov. 19, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8zr9
Q-score: 0.551

Kong J, Wu W, Ke S, Zhou Z, Xia S, Chen J, Zhu R, Hou Y, Makanyire T, Shan X, Zhuo Z, Li K, Shen H, Yang P, Huang P, Liu J, Li J, Sun X, Dong J, Sun H, Chen M, Lu M, Li Z, Xiao Y

Nat Commun (2025) 16 pp. 8611-8611 [ Pubmed: 41022836 DOI: doi:10.1038/s41467-025-63658-x ]

EMD-61417
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3D View
Cryo-EM structure of AbCapV dimer, apo form
CryoEM
Release date: Nov. 19, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9jeh
Q-score: 0.567

Kong J, Wu W, Ke S, Zhou Z, Xia S, Chen J, Zhu R, Hou Y, Makanyire T, Shan X, Zhuo Z, Li K, Shen H, Yang P, Huang P, Liu J, Li J, Sun X, Dong J, Sun H, Chen M, Lu M, Li Z, Xiao Y

Nat Commun (2025) 16 pp. 8611-8611 [ Pubmed: 41022836 DOI: doi:10.1038/s41467-025-63658-x ]

EMD-61419
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Cryo-EM structure of AbCapV tetramer, intermediate form
CryoEM
Release date: Nov. 19, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9jek
Q-score: 0.514

Kong J, Wu W, Ke S, Zhou Z, Xia S, Chen J, Zhu R, Hou Y, Makanyire T, Shan X, Zhuo Z, Li K, Shen H, Yang P, Huang P, Liu J, Li J, Sun X, Dong J, Sun H, Chen M, Lu M, Li Z, Xiao Y

Nat Commun (2025) 16 pp. 8611-8611 [ Pubmed: 41022836 DOI: doi:10.1038/s41467-025-63658-x ]

EMD-62291
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Cryo-EM structure of AbCapV S58A filament bound with 3 3 -cGAMP with extra phospholipid density
CryoEM
Release date: Nov. 12, 2025
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9kej
Q-score: 0.448

Kong J, Wu W, Ke S, Zhou Z, Xia S, Chen J, Zhu R, Hou Y, Makanyire T, Shan X, Zhuo Z, Li K, Shen H, Yang P, Huang P, Liu J, Li J, Sun X, Dong J, Sun H, Chen M, Lu M, Li Z, Xiao Y

Nat Commun (2025) 16 pp. 8611-8611 [ Pubmed: 41022836 DOI: doi:10.1038/s41467-025-63658-x ]

EMD-19870
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3D View
Human OGG1 bound to a nucleosome core particle with 8-oxodGuo lesion at SHL6.0
CryoEM
Release date: Nov. 6, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9eoz
Q-score: 0.465

Ren M, Gut F, Fan Y, Ma J, Shan X, Yikilmazsoy A, Likhodeeva M, Hopfner KP, Zhou C

Nat Commun (2024) 15 pp. 9407-9407 [ DOI: doi:10.1038/s41467-024-53811-3 Pubmed: 39477986 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Protein [6]
  • DNA [2]
  • Ligand [2]

Organism

  • Acinetobacter baumannii [4]
  • Synthetic construct [2]
  • Homo sapiens [2]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [2]

Release Date

  • 2026 [1]
  • 2025 [4]
  • 2024 [1]

Author by name

  • Shan X [6]
  • Li J [5]
  • Chen J [4]
  • Chen M [4]
  • Dong J [4]
  • Hou Y [4]
  • Huang P [4]
  • Ke S [4]
  • Kong J [4]
  • Kong JP [4]
  • Li K [4]
  • Li Z [4]
  • Li ZX [4]
  • Liu J [4]
  • Lu M [4]
  • Makanyire T [4]
  • Shen H [4]
  • Sun H [4]
  • Sun X [4]
  • Wu W [4]
  • Xia S [4]
  • Xiao Y [4]
  • Xiao YB [4]
  • Yang P [4]
  • Zhou Z [4]
  • Zhu R [4]
  • Zhuo Z [4]
  • Ke SY [3]
  • Wu WQ [3]
  • Ma J [2]
  • Ren M [2]
  • Zhou C [2]
  • Fan Y [1]
  • Gut F [1]
  • Hopfner K-P [1]
  • Hopfner KP [1]
  • Ji G [1]
  • Ji GY [1]
  • Li H [1]
  • Li HT [1]
  • Likhodeeva M [1]
  • Shan XJ [1]
  • Yikilmazsoy A [1]
  • Zhou CZ [1]
  • Zhou Y [1]

Author by ORCID

  • Kong J [4]
  • Li Z [4]
  • Shen H [4]
  • Chen M [4]
  • Xiao Y [4]
  • Zhou C [2]
  • Li H [1]
  • Hopfner KP [1]
  • Likhodeeva M [1]
  • Ren M [1]
  • Yikilmazsoy A [1]

Journal

  • NAT COMMUN [5]
  • PROTEIN CELL [1]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [5]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • FEI FALCON IV 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [6]
  • Gene Ontology [6]
  • PDB [6]
  • PDBe-Kb [6]
  • UniProt [6]
  • InterPro [5]
  • ChEBI [2]
  • ChEMBL [2]
  • Complex Portal [2]
  • Pfam [2]