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primary_citation_author:"Palovcak E"

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Current Database

  • EMDB [8]
  • EMPIAR [1]

Current status

  • REL [9]

Sample type

  • Complex [8]
  • DNA [7]
  • Protein [7]
  • Ligand [3]

Organism

  • Synthetic construct [7]
  • Xenopus laevis [7]
  • Homo sapiens [7]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [7]
  • 2017 [1]

Author by name

  • Cheng Y [9]
  • Narlikar GJ [9]
  • Palovcak E [9]
  • Agard DA [8]
  • Chio US [8]
  • Wang F [8]
  • Yu Z [8]
  • Armache JP [7]
  • Autzen H [7]
  • Munoz EN [7]
  • Smith AAA [7]
  • Armache J-P [1]
  • Autzen AAA [1]
  • Autzen HE [1]
  • Burlingame AL [1]
  • Echeverria I [1]
  • Johnston JB [1]
  • Muñoz E [1]
  • Sali A [1]
  • Stoddard CI [1]
  • Trnka MJ [1]
  • Zhou CY [1]

Author by ORCID

  • Cheng Y [7]
  • Yu Z [6]
  • Armache JP [6]
  • Narlikar GJ [6]
  • Chio US [6]
  • Agard DA [6]
  • Autzen H [6]
  • Trnka MJ [1]
  • Echeverria I [1]

Journal

  • NAT COMMUN [8]
  • CELL REP [1]

Software

  • CRYOSPARC [7]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [7]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • PDB [7]
  • AlphaFold DB [6]
  • Complex Portal [6]
  • EMPIAR [6]
  • PDBe-Kb [6]
  • UniProt [6]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
  • EMDB [1]
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EMPIAR-11909
Related EMDB
EMD-43002 EMD-43000 EMD-43004 EMD-43001 EMD-43005 EMD-43003 EMD-42977
Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2H-nucleosome complex without crosslinking
Release date: Sept. 4, 2025
Dataset size: 7.1 TB
Experiment type: EMDB

Chio US, Palovcak E, Smith AAA, Autzen H, Muñoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 [ DOI: 10.1038/s41467-024-46178-y Pubmed: 38472177 ]

Image sets:
  • Unaligned raw movie frames, divided into three folders, corresponding to three collections
EMD-42977
Download Map
3D View
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 conformation 1
CryoEM
Release date: March 20, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8v4y
Q-score: 0.53
Similar entry percentile: 59%

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ DOI: doi:10.1038/s41467-024-46178-y Pubmed: 38472177 ]

EMD-43000
Download Map
3D View
Raw data
EMPIAR-11909
Cryo-EM structure of SNF2h-nucleosome complex consensus structure
CryoEM
Release date: March 20, 2024
Resolution: 2.3 Å
EM Method: Single-particle

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]

EMD-43001
Download Map
3D View
Raw data
EMPIAR-11909
Cryo-EM structure of SNF2h-nucleosome complex single-bound structure
CryoEM
Release date: March 20, 2024
Resolution: 2.5 Å
EM Method: Single-particle

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]

EMD-43002
Download Map
3D View
Raw data
EMPIAR-11909
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex
CryoEM
Release date: March 20, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8v6v
Q-score: 0.477
Similar entry percentile: 33%

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]

EMD-43003
Download Map
3D View
Raw data
EMPIAR-11909
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 conformation 2
CryoEM
Release date: March 20, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8v7l
Q-score: 0.456
Similar entry percentile: 29%

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]

EMD-43004
Download Map
3D View
Raw data
EMPIAR-11909
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex conformation 1
CryoEM
Release date: March 20, 2024
Resolution: 3.1 Å
EM Method: Single-particle

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]

EMD-43005
Download Map
3D View
Raw data
EMPIAR-11909
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex conformation 2
CryoEM
Release date: March 20, 2024
Resolution: 3.2 Å
EM Method: Single-particle

Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y

Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]

EMD-8696
Download Map
3D View
Regulation of Rvb1/Rvb2 by a domain within the INO80 chromatin remodeling complex implicates the yeast Rvbs as protein assembly chaperones
CryoEM
Release date: June 7, 2017
Resolution: 9.6 Å
EM Method: Single-particle

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ

Cell Rep (2017) 19 pp. 2033-2044 [ DOI: doi:10.1016/j.celrep.2017.05.029 Pubmed: 28591576 ]

Sort by: Download
Showing 1 - 9 of 9. Page 1 of 1
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [8]
  • EMPIAR [1]

Current status

  • REL [9]

Sample type

  • Complex [8]
  • DNA [7]
  • Protein [7]
  • Ligand [3]

Organism

  • Synthetic construct [7]
  • Xenopus laevis [7]
  • Homo sapiens [7]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [2]

Release Date

  • 2025 [1]
  • 2024 [7]
  • 2017 [1]

Author by name

  • Cheng Y [9]
  • Narlikar GJ [9]
  • Palovcak E [9]
  • Agard DA [8]
  • Chio US [8]
  • Wang F [8]
  • Yu Z [8]
  • Armache JP [7]
  • Autzen H [7]
  • Munoz EN [7]
  • Smith AAA [7]
  • Armache J-P [1]
  • Autzen AAA [1]
  • Autzen HE [1]
  • Burlingame AL [1]
  • Echeverria I [1]
  • Johnston JB [1]
  • Muñoz E [1]
  • Sali A [1]
  • Stoddard CI [1]
  • Trnka MJ [1]
  • Zhou CY [1]

Author by ORCID

  • Cheng Y [7]
  • Yu Z [6]
  • Armache JP [6]
  • Narlikar GJ [6]
  • Chio US [6]
  • Agard DA [6]
  • Autzen H [6]
  • Trnka MJ [1]
  • Echeverria I [1]

Journal

  • NAT COMMUN [8]
  • CELL REP [1]

Software

  • CRYOSPARC [7]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [7]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • PDB [7]
  • AlphaFold DB [6]
  • Complex Portal [6]
  • EMPIAR [6]
  • PDBe-Kb [6]
  • UniProt [6]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
  • EMDB [1]