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primary_citation_author:"Miyamoto Y"

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • Protein [15]
  • Ligand [2]

Organism

  • Homo sapiens [9]
  • Severe acute respiratory syndrome coronavirus [4]
  • Mus musculus [3]
  • Trichomonas vaginalis [2]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [6]
  • 1-2 MDa [2]

Release Date

  • 2026 [7]
  • 2025 [2]
  • 2024 [2]
  • 2023 [4]

Author by name

  • Miyamoto Y [15]
  • Hanada K [9]
  • Ishizuka-katsura Y [9]
  • Katsura K [9]
  • Kukimoto-niino M [9]
  • Shirouzu M [9]
  • Yamauchi J [9]
  • Yonemochi M [9]
  • Wong RW [7]
  • Yoshimura K [7]
  • Anzai I [4]
  • Fujita J [4]
  • Inoue T [4]
  • Kajita T [4]
  • Kosaka Y [4]
  • Makino F [4]
  • Matsuura Y [4]
  • Namba K [4]
  • Ono C [4]
  • Shichinohe S [4]
  • Suzuki K [4]
  • Taguwa S [4]
  • Takada K [4]
  • Torii S [4]
  • Watanabe T [4]
  • Almaliti J [2]
  • Bartosova J [2]
  • Boura E [2]
  • Eckmann L [2]
  • Fajtova P [2]
  • Gerwick WH [2]
  • Hurysz BM [2]
  • O Donoghue Aj [2]
  • Shinoda T [2]
  • Silhan J [2]

Author by ORCID

  • Kukimoto-niino M [9]
  • Shirouzu M [9]
  • Inoue T [4]
  • Matsuura Y [4]
  • Anzai I [4]
  • Makino F [4]
  • Watanabe T [4]
  • Fujita J [4]
  • Namba K [4]
  • O'donoghue AJ [2]
  • Miyamoto Y [2]
  • Yamauchi J [2]
  • Fajtova P [2]
  • Katsura K [2]
  • Boura E [2]
  • Shinoda T [2]
  • Silhan J [2]

Journal

  • TO BE PUBLISHED [11]
  • COMMUN BIOL [2]
  • NAT COMMUN [2]

Software

  • RELION [11]

Microscope

  • TFS KRIOS [9]
  • JEOL CRYO ARM 300 [4]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • AlphaFold DB [15]
  • PDB [15]
  • UniProt [15]
  • PDBe-Kb [13]
  • Gene Ontology [11]
  • Pfam [11]
  • Complex Portal [4]
  • InterPro [4]
  • DrugBank [1]
Sort by: Download
Showing 1 - 10 of 15. Page 1 of 2
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EMD-65174
Download Map
3D View
Structure of DOCK6-Cdc42 complex protomer
CryoEM
Release date: June 3, 2026
Resolution: 3.94 Å
EM Method: Single-particle
Fitted PDBs: 9vm2
Q-score: 0.405

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-65175
Download Map
3D View
Structure of DOCK6-Cdc42 complex
CryoEM
Release date: June 3, 2026
Resolution: 4.52 Å
EM Method: Single-particle
Fitted PDBs: 9vm3
Q-score: 0.259

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-65176
Download Map
3D View
Structure of DOCK6-Rac1 complex protomer
CryoEM
Release date: June 3, 2026
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9vm4
Q-score: 0.358

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-65177
Download Map
3D View
Structure of DOCK6-Rac1 complex
CryoEM
Release date: June 3, 2026
Resolution: 5.32 Å
EM Method: Single-particle
Fitted PDBs: 9vm5
Q-score: 0.253

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-65178
Download Map
3D View
Structure of DOCK6 tetramer
CryoEM
Release date: June 3, 2026
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 9vm6
Q-score: 0.27

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-65179
Download Map
3D View
Structure of DOCK6 tetramer complexed with Rac1
CryoEM
Release date: June 3, 2026
Resolution: 6.85 Å
EM Method: Single-particle
Fitted PDBs: 9vm7
Q-score: 0.135

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-65180
Download Map
3D View
Structure of DOCK6 octamer
CryoEM
Release date: June 3, 2026
Resolution: 7.53 Å
EM Method: Single-particle
Fitted PDBs: 9vm8
Q-score: 0.173

Kukimoto-Niino M, Katsura K, Yoshimura K, Ishizuka-Katsura Y, Miyamoto Y, Yonemochi M, Hanada K, Yamauchi J, Wong RW, Shirouzu M

To Be Published

EMD-63464
Download Map
3D View
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
CryoEM
Release date: Nov. 19, 2025
Resolution: 6.98 Å
EM Method: Single-particle
Fitted PDBs: 9lx0
Q-score: 0.093

Shinoda T, Katsura K, Ishizuka-Katsura Y, Hanada K, Yonemochi M, Miyamoto Y, Kukimoto-Niino M, Yamauchi J, Shirouzu M

Commun Biol (2025) 8 pp. 1523-1523 [ DOI: doi:10.1038/s42003-025-09113-5 Pubmed: 41233496 ]

EMD-63477
Download Map
3D View
DOCK5/ELMO1 complex with RhoG and Rac1 on lipid membrane
CryoEM
Release date: Nov. 19, 2025
Resolution: 7.52 Å
EM Method: Single-particle
Fitted PDBs: 9lxh
Q-score: 0.113

Shinoda T, Katsura K, Ishizuka-Katsura Y, Hanada K, Yonemochi M, Miyamoto Y, Kukimoto-Niino M, Yamauchi J, Shirouzu M

Commun Biol (2025) 8 pp. 1523-1523 [ DOI: doi:10.1038/s42003-025-09113-5 Pubmed: 41233496 ]

EMD-17337
Download Map
3D View
CryoEM structure of 20S Trichomonas vaginalis proteasome in complex with proteasome inhibitor CP-17
CryoEM
Release date: May 22, 2024
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8p0t
Q-score: 0.617

Silhan J, Fajtova P, Bartosova J, Hurysz BM, Almaliti J, Miyamoto Y, Eckmann L, Gerwick WH, O'Donoghue AJ, Boura E

Nat Commun (2024) 15 pp. 8621-8621 [ DOI: doi:10.1038/s41467-024-53022-w Pubmed: 39366995 ]

Sort by: Download
Showing 1 - 10 of 15. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • Protein [15]
  • Ligand [2]

Organism

  • Homo sapiens [9]
  • Severe acute respiratory syndrome coronavirus [4]
  • Mus musculus [3]
  • Trichomonas vaginalis [2]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [6]
  • 1-2 MDa [2]

Release Date

  • 2026 [7]
  • 2025 [2]
  • 2024 [2]
  • 2023 [4]

Author by name

  • Miyamoto Y [15]
  • Hanada K [9]
  • Ishizuka-katsura Y [9]
  • Katsura K [9]
  • Kukimoto-niino M [9]
  • Shirouzu M [9]
  • Yamauchi J [9]
  • Yonemochi M [9]
  • Wong RW [7]
  • Yoshimura K [7]
  • Anzai I [4]
  • Fujita J [4]
  • Inoue T [4]
  • Kajita T [4]
  • Kosaka Y [4]
  • Makino F [4]
  • Matsuura Y [4]
  • Namba K [4]
  • Ono C [4]
  • Shichinohe S [4]
  • Suzuki K [4]
  • Taguwa S [4]
  • Takada K [4]
  • Torii S [4]
  • Watanabe T [4]
  • Almaliti J [2]
  • Bartosova J [2]
  • Boura E [2]
  • Eckmann L [2]
  • Fajtova P [2]
  • Gerwick WH [2]
  • Hurysz BM [2]
  • O Donoghue Aj [2]
  • Shinoda T [2]
  • Silhan J [2]

Author by ORCID

  • Kukimoto-niino M [9]
  • Shirouzu M [9]
  • Inoue T [4]
  • Matsuura Y [4]
  • Anzai I [4]
  • Makino F [4]
  • Watanabe T [4]
  • Fujita J [4]
  • Namba K [4]
  • O'donoghue AJ [2]
  • Miyamoto Y [2]
  • Yamauchi J [2]
  • Fajtova P [2]
  • Katsura K [2]
  • Boura E [2]
  • Shinoda T [2]
  • Silhan J [2]

Journal

  • TO BE PUBLISHED [11]
  • COMMUN BIOL [2]
  • NAT COMMUN [2]

Software

  • RELION [11]

Microscope

  • TFS KRIOS [9]
  • JEOL CRYO ARM 300 [4]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • AlphaFold DB [15]
  • PDB [15]
  • UniProt [15]
  • PDBe-Kb [13]
  • Gene Ontology [11]
  • Pfam [11]
  • Complex Portal [4]
  • InterPro [4]
  • DrugBank [1]