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primary_citation_author:"Kornberg RD"

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Current Database

  • EMDB [35]

Current status

  • REL [35]

Sample type

  • Complex [32]
  • Protein [24]
  • Ligand [11]
  • DNA [3]
  • Sample [3]

Organism

  • Chaetomium thermophilum [14]
  • Saccharomyces cerevisiae [11]
  • Schizosaccharomyces pombe [3]
  • Saccharomyces cerevisiae [3]
  • Morbillivirus hominis [3]
  • Chaetomium thermophilum [3]
  • Nipah virus [2]
  • Schizosaccharomyces pombe [1]

EM Method

  • Single-particle [35]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [7]
  • 500-1000 kDa [8]
  • 1-2 MDa [4]

Release Date

  • 2025 [20]
  • 2024 [2]
  • 2023 [4]
  • 2021 [3]
  • 2016 [3]
  • 2015 [2]
  • 2013 [1]

Author by name

  • Kornberg RD [35]
  • Bushnell DA [22]
  • Chen DH [16]
  • Mattoo RUH [16]
  • Zhang H [16]
  • Zhang HQ [16]
  • Wang Y [14]
  • Tamir S [13]
  • Zhang Y [11]
  • Zhao L [10]
  • Wang YR [8]
  • Liu S [7]
  • Shi W [7]
  • Davis RE [6]
  • Ji L [5]
  • Xu K [5]
  • Gao X [4]
  • Ji LT [4]
  • Burlingame AL [3]
  • Chen DC [3]
  • Gao H [3]
  • Kalisman N [3]
  • Mattei PJ [3]
  • Murakami K [3]
  • Nie Y [3]
  • Robinson PJ [3]
  • Trnka MJ [3]
  • Wang C [3]
  • Wang L [3]
  • Wang X [3]
  • Yuan C [3]
  • Asturias FJ [2]
  • Gao HH [2]
  • Liu SM [2]
  • Tsai K-L [2]
  • Wang YN [2]
  • Zhao LX [2]
  • Zhou Y [2]
  • Adams CM [1]
  • Azubel M [1]
  • Elmlund D [1]
  • Elmlund H [1]
  • Levi-kalisman Y [1]
  • Levitt M [1]
  • Liu X [1]
  • Shi WP [1]
  • Tang J [1]
  • Zhang X [1]
  • Zinzula L [1]

Author by ORCID

  • Kornberg RD [22]
  • Mattoo RUH [16]
  • Chen DH [16]
  • Zhang H [6]
  • Murakami K [3]
  • Trnka MJ [3]
  • Kalisman N [3]
  • Tsai K-L [2]
  • Zinzula L [1]
  • Liu X [1]
  • Kornberg RD [1]
  • Zhang X [1]
  • Zhang Y [1]
  • Zhao L [1]
  • Wang Y [1]
  • Gao H [1]
  • Wang Y [1]

Journal

  • MOL CELL [16]
  • CELL [7]
  • PNAS [7]
  • NAT COMMUN [3]
  • SCI ADV [1]
  • SCIENCE [1]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [14]
  • CTFFIND [12]
  • RELION [8]
  • SPARX [2]
  • CFTFIND [1]
  • PHENIX [1]
  • SIMPLE [1]

Microscope

  • TFS KRIOS [18]
  • FEI TITAN KRIOS [10]
  • FEI TECNAI F20 [4]
  • FEI/PHILIPS CM300FEG/T [2]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [35]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [13]
  • GATAN K3 6K X 4K [10]
  • FEI FALCON IV 4K X 4K [6]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GENERIC GATAN 4K X 4K [1]

External links

  • PDB [20]
  • AlphaFold DB [19]
  • Gene Ontology [19]
  • InterPro [19]
  • PDBe-Kb [19]
  • UniProt [19]
  • Pfam [17]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • Complex Portal [4]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 35. Page 1 of 4
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EMD-64513
Download Map
3D View
The NuA3 histone acetyltransferase complex
CryoEM
Release date: Dec. 10, 2025
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 9uuo
Q-score: 0.414
Similar entry percentile: 48%

Shi W, Zhao L, Wang Y, Zhang Y, Liu S, Wang Y, Kornberg RD, Zhang H

Nat Commun (2025) 17 pp. 342-342 [ Pubmed: 41318527 DOI: doi:10.1038/s41467-025-67049-0 ]

EMD-64517
Download Map
3D View
The NuA3 histone acetyltransferase complex bound to acetyl-CoA and H3 tail
CryoEM
Release date: Dec. 10, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9uus
Q-score: 0.304
Similar entry percentile: 5%

Shi W, Zhao L, Wang Y, Zhang Y, Liu S, Wang Y, Kornberg RD, Zhang H

Nat Commun (2025) 17 pp. 342-342 [ Pubmed: 41318527 DOI: doi:10.1038/s41467-025-67049-0 ]

EMD-65145
Download Map
3D View
Cryo-EM structure of the NuA3 complex bound to Ace-coenzyme A
CryoEM
Release date: Dec. 10, 2025
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 9vkw
Q-score: 0.329
Similar entry percentile: 7%

Shi W, Zhao L, Wang Y, Zhang Y, Liu S, Wang Y, Kornberg RD, Zhang H

Nat Commun (2025) 17 pp. 342-342 [ Pubmed: 41318527 DOI: doi:10.1038/s41467-025-67049-0 ]

EMD-73233
Download Map
3D View
Tra1 and core modules including core tip of ctSAGA complex
CryoEM
Focused map
Release date: Dec. 3, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ynu
Q-score: 0.484
Similar entry percentile: 56%

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

EMD-73234
Download Map
3D View
Tra1 and Core Module of ctSAGA
CryoEM
Consensus map
Release date: Dec. 3, 2025
Resolution: 2.7 Å
EM Method: Single-particle

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

EMD-73235
Download Map
3D View
Histone Acetyl Transferase HAT module of ctSAGA
Focused map
CryoEM
Release date: Dec. 3, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9ynv
Q-score: 0.373
Similar entry percentile: 33%

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

EMD-73236
Download Map
3D View
Tra1, Core and minimal HAT modules of ctSAGA, composite.
Composite map
CryoEM
Release date: Dec. 3, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9ynw
Q-score: 0.505
Similar entry percentile: 81%

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

EMD-73237
Download Map
3D View
Focused map of HAT module Bromodomain region
CryoEM
Focused map
Release date: Dec. 3, 2025
Resolution: 4.4 Å
EM Method: Single-particle

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

EMD-73238
Download Map
3D View
Focused map of Tra1 module of ctSAGA
Focused map
CryoEM
Release date: Dec. 3, 2025
Resolution: 3.7 Å
EM Method: Single-particle

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

EMD-73239
Download Map
3D View
Focused map of Tra1 module of ctSAGA
CryoEM
Focused map
Release date: Dec. 3, 2025
Resolution: 3.4 Å
EM Method: Single-particle

Mattoo RUH, Chen DH, Bushnell DA, Tamir S, Kornberg RD

Mol Cell (2025) 85 pp. 4333-4346.e4 [ Pubmed: 41260211 DOI: doi:10.1016/j.molcel.2025.10.025 ]

Sort by: Download
Showing 1 - 10 of 35. Page 1 of 4
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [35]

Current status

  • REL [35]

Sample type

  • Complex [32]
  • Protein [24]
  • Ligand [11]
  • DNA [3]
  • Sample [3]

Organism

  • Chaetomium thermophilum [14]
  • Saccharomyces cerevisiae [11]
  • Schizosaccharomyces pombe [3]
  • Saccharomyces cerevisiae [3]
  • Morbillivirus hominis [3]
  • Chaetomium thermophilum [3]
  • Nipah virus [2]
  • Schizosaccharomyces pombe [1]

EM Method

  • Single-particle [35]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [7]
  • 500-1000 kDa [8]
  • 1-2 MDa [4]

Release Date

  • 2025 [20]
  • 2024 [2]
  • 2023 [4]
  • 2021 [3]
  • 2016 [3]
  • 2015 [2]
  • 2013 [1]

Author by name

  • Kornberg RD [35]
  • Bushnell DA [22]
  • Chen DH [16]
  • Mattoo RUH [16]
  • Zhang H [16]
  • Zhang HQ [16]
  • Wang Y [14]
  • Tamir S [13]
  • Zhang Y [11]
  • Zhao L [10]
  • Wang YR [8]
  • Liu S [7]
  • Shi W [7]
  • Davis RE [6]
  • Ji L [5]
  • Xu K [5]
  • Gao X [4]
  • Ji LT [4]
  • Burlingame AL [3]
  • Chen DC [3]
  • Gao H [3]
  • Kalisman N [3]
  • Mattei PJ [3]
  • Murakami K [3]
  • Nie Y [3]
  • Robinson PJ [3]
  • Trnka MJ [3]
  • Wang C [3]
  • Wang L [3]
  • Wang X [3]
  • Yuan C [3]
  • Asturias FJ [2]
  • Gao HH [2]
  • Liu SM [2]
  • Tsai K-L [2]
  • Wang YN [2]
  • Zhao LX [2]
  • Zhou Y [2]
  • Adams CM [1]
  • Azubel M [1]
  • Elmlund D [1]
  • Elmlund H [1]
  • Levi-kalisman Y [1]
  • Levitt M [1]
  • Liu X [1]
  • Shi WP [1]
  • Tang J [1]
  • Zhang X [1]
  • Zinzula L [1]

Author by ORCID

  • Kornberg RD [22]
  • Mattoo RUH [16]
  • Chen DH [16]
  • Zhang H [6]
  • Murakami K [3]
  • Trnka MJ [3]
  • Kalisman N [3]
  • Tsai K-L [2]
  • Zinzula L [1]
  • Liu X [1]
  • Kornberg RD [1]
  • Zhang X [1]
  • Zhang Y [1]
  • Zhao L [1]
  • Wang Y [1]
  • Gao H [1]
  • Wang Y [1]

Journal

  • MOL CELL [16]
  • CELL [7]
  • PNAS [7]
  • NAT COMMUN [3]
  • SCI ADV [1]
  • SCIENCE [1]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [14]
  • CTFFIND [12]
  • RELION [8]
  • SPARX [2]
  • CFTFIND [1]
  • PHENIX [1]
  • SIMPLE [1]

Microscope

  • TFS KRIOS [18]
  • FEI TITAN KRIOS [10]
  • FEI TECNAI F20 [4]
  • FEI/PHILIPS CM300FEG/T [2]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [35]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [13]
  • GATAN K3 6K X 4K [10]
  • FEI FALCON IV 4K X 4K [6]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GENERIC GATAN 4K X 4K [1]

External links

  • PDB [20]
  • AlphaFold DB [19]
  • Gene Ontology [19]
  • InterPro [19]
  • PDBe-Kb [19]
  • UniProt [19]
  • Pfam [17]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • Complex Portal [4]
  • SCOP2 [1]