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primary_citation_author:"Kojima A"

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Current Database

  • EMDB [16]
  • EMPIAR [1]

Current status

  • REL [17]

Sample type

  • Complex [16]
  • Protein [15]
  • Ligand [13]

Organism

  • Homo sapiens [13]
  • Synthetic construct [5]
  • Mus musculus [3]
  • Macaca fascicularis [3]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [13]

Model molecular weight

  • 0-50 kDa [3]
  • 50-100 kDa [6]
  • 100-250 kDa [6]

Release Date

  • 2026 [14]
  • 2025 [3]

Author by name

  • Kato HE [17]
  • Kojima A [17]
  • Fukuda M [13]
  • Kobayashi K [13]
  • Kawakami K [10]
  • Matsui TE [10]
  • Gu Y [7]
  • Kobayashi N [7]
  • Uemoto K [7]
  • Kim S [6]
  • Appleby MV [4]
  • Beale JH [4]
  • Dostal J [4]
  • Hovan A [4]
  • Isaikina P [4]
  • Kloz M [4]
  • Schertler GFX [4]
  • Schmidt SL [4]
  • Sen S [4]
  • Walter D [4]
  • Dror RO [3]
  • Fukunaga A [3]
  • Ikeda H [3]
  • Imai H [3]
  • Inoue A [3]
  • Inoue WJ [3]
  • Ishikita H [3]
  • Iwata S [3]
  • Kandori H [3]
  • Katayama K [3]
  • Kise R [3]
  • Kobayashi T [3]
  • Kugawa M [3]
  • Nango E [3]
  • Noda T [3]
  • Nuemket N [3]
  • Ohashi S [3]
  • Olivucci M [3]
  • Sacchetta F [3]
  • Saito K [3]
  • Sugita Y [3]
  • Suno R [3]
  • Suomivuori CM [3]
  • Tsujimura M [3]
  • Yamashita K [3]
  • Yang X [3]
  • Inoue W [2]
  • Koyanagi J [2]
  • Kobayashi J [1]

Author by ORCID

  • Kato HE [9]
  • Kojima A [7]
  • Kim S [5]
  • Kobayashi K [5]
  • Fukuda M [5]
  • Hovan A [4]
  • Walter D [4]
  • Appleby MV [4]
  • Schertler GFX [4]
  • Sen S [4]
  • Beale JH [4]
  • Dostal J [4]
  • Isaikina P [4]
  • Kloz M [4]
  • Schmidt SL [4]
  • Sugita Y [3]
  • Katayama K [3]
  • Nango E [3]
  • Noda T [3]
  • Yang X [3]
  • Kandori H [3]
  • Sacchetta F [3]
  • Olivucci M [3]
  • Imai H [3]
  • Iwata S [3]
  • Suno R [3]
  • Ohashi S [3]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kawakami K [2]
  • Yamashita K [2]
  • Ishikita H [2]
  • Dror RO [2]
  • Tsujimura M [2]
  • Inoue A [2]

Journal

  • BIORXIV [7]
  • SCIENCE [7]
  • NAT COMMUN [3]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [15]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • FEI FALCON IV 4K X 4K [4]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • PDB [16]
  • AlphaFold DB [15]
  • UniProt [15]
  • PDBe-Kb [12]
  • Pfam [12]
  • ChEMBL [9]
  • ChEBI [8]
  • DrugBank [2]
  • EMPIAR [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Complex Portal [1]
  • EMDB [1]
Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
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EMD-52707
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3D View
Dark-state structure of human medium-wavelength cone opsin OPN1MW
CryoEM
Release date: July 8, 2026
Resolution: 3.9 Å
EM Method: Single-particle

Schmidt SL, Dostal J, Sen S, Hovan A, Walter D, Appleby MV, Kojima A, Kato HE, Beale JH, Kloz M, Schertler GFX, Isaikina P

Science (2026) 392 pp. eadz3624-eadz3624 [ Pubmed: 42348698 DOI: doi:10.1126/science.adz3624 ]

EMD-52615
Download Map
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Dark-state structure of human medium-wave-sensitive cone opsin OPN1MW
CryoEM
Release date: June 24, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9i3t
Q-score: 0.217

Schmidt SL, Dostal J, Sen S, Hovan A, Walter D, Appleby MV, Kojima A, Kato HE, Beale JH, Kloz M, Schertler GFX, Isaikina P

Science (2026) 392 pp. eadz3624-eadz3624 [ Pubmed: 42348698 DOI: doi:10.1126/science.adz3624 ]

EMD-52814
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Dark-state structure of human short-wave-sensitive opsin OPN1SW
CryoEM
Release date: June 24, 2026
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 9ibw
Q-score: 0.362

Schmidt SL, Dostal J, Sen S, Hovan A, Walter D, Appleby MV, Kojima A, Kato HE, Beale JH, Kloz M, Schertler GFX, Isaikina P

Science (2026) 392 pp. eadz3624-eadz3624 [ Pubmed: 42348698 DOI: doi:10.1126/science.adz3624 ]

EMD-53268
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Pre-active dark-state structure of human short-wave-sensitive opsin OPN1SW
CryoEM
Release date: June 24, 2026
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 9qp4
Q-score: 0.346

Schmidt SL, Dostal J, Sen S, Hovan A, Walter D, Appleby MV, Kojima A, Kato HE, Beale JH, Kloz M, Schertler GFX, Isaikina P

Science (2026) 392 pp. eadz3624-eadz3624 [ Pubmed: 42348698 DOI: doi:10.1126/science.adz3624 ]

EMD-64397
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Cryo-EM structure of macaque red cone pigment with Q114N mutation
CryoEM
Release date: June 24, 2026
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 9upm
Q-score: 0.461

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64398
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Cryo-EM structure of macaque green cone pigment with Q114N mutation
CryoEM
Release date: June 24, 2026
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9upn
Q-score: 0.373

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64399
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Cryo-EM structure of macaque green cone pigment wild type
CryoEM
Release date: June 24, 2026
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 9upo
Q-score: 0.349

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64536
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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant
Release date: May 6, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9uvt
Q-score: 0.417

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64537
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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant, focused on receptor
Release date: May 6, 2026
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 9uvu
Q-score: 0.387

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64538
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Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan
Release date: May 6, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9uvv
Q-score: 0.491

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [16]
  • EMPIAR [1]

Current status

  • REL [17]

Sample type

  • Complex [16]
  • Protein [15]
  • Ligand [13]

Organism

  • Homo sapiens [13]
  • Synthetic construct [5]
  • Mus musculus [3]
  • Macaca fascicularis [3]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [13]

Model molecular weight

  • 0-50 kDa [3]
  • 50-100 kDa [6]
  • 100-250 kDa [6]

Release Date

  • 2026 [14]
  • 2025 [3]

Author by name

  • Kato HE [17]
  • Kojima A [17]
  • Fukuda M [13]
  • Kobayashi K [13]
  • Kawakami K [10]
  • Matsui TE [10]
  • Gu Y [7]
  • Kobayashi N [7]
  • Uemoto K [7]
  • Kim S [6]
  • Appleby MV [4]
  • Beale JH [4]
  • Dostal J [4]
  • Hovan A [4]
  • Isaikina P [4]
  • Kloz M [4]
  • Schertler GFX [4]
  • Schmidt SL [4]
  • Sen S [4]
  • Walter D [4]
  • Dror RO [3]
  • Fukunaga A [3]
  • Ikeda H [3]
  • Imai H [3]
  • Inoue A [3]
  • Inoue WJ [3]
  • Ishikita H [3]
  • Iwata S [3]
  • Kandori H [3]
  • Katayama K [3]
  • Kise R [3]
  • Kobayashi T [3]
  • Kugawa M [3]
  • Nango E [3]
  • Noda T [3]
  • Nuemket N [3]
  • Ohashi S [3]
  • Olivucci M [3]
  • Sacchetta F [3]
  • Saito K [3]
  • Sugita Y [3]
  • Suno R [3]
  • Suomivuori CM [3]
  • Tsujimura M [3]
  • Yamashita K [3]
  • Yang X [3]
  • Inoue W [2]
  • Koyanagi J [2]
  • Kobayashi J [1]

Author by ORCID

  • Kato HE [9]
  • Kojima A [7]
  • Kim S [5]
  • Kobayashi K [5]
  • Fukuda M [5]
  • Hovan A [4]
  • Walter D [4]
  • Appleby MV [4]
  • Schertler GFX [4]
  • Sen S [4]
  • Beale JH [4]
  • Dostal J [4]
  • Isaikina P [4]
  • Kloz M [4]
  • Schmidt SL [4]
  • Sugita Y [3]
  • Katayama K [3]
  • Nango E [3]
  • Noda T [3]
  • Yang X [3]
  • Kandori H [3]
  • Sacchetta F [3]
  • Olivucci M [3]
  • Imai H [3]
  • Iwata S [3]
  • Suno R [3]
  • Ohashi S [3]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kawakami K [2]
  • Yamashita K [2]
  • Ishikita H [2]
  • Dror RO [2]
  • Tsujimura M [2]
  • Inoue A [2]

Journal

  • BIORXIV [7]
  • SCIENCE [7]
  • NAT COMMUN [3]

Software

  • CRYOSPARC [1]

Microscope

  • TFS KRIOS [15]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • FEI FALCON IV 4K X 4K [4]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • PDB [16]
  • AlphaFold DB [15]
  • UniProt [15]
  • PDBe-Kb [12]
  • Pfam [12]
  • ChEMBL [9]
  • ChEBI [8]
  • DrugBank [2]
  • EMPIAR [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Complex Portal [1]
  • EMDB [1]