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primary_citation_author:"Gragera M"

Filter By

Current Database

  • EMDB [29]
  • EMPIAR [3]

Current status

  • REL [32]

Sample type

  • Complex [29]
  • Protein [29]
  • Ligand [14]
  • DNA [1]

Organism

  • Homo sapiens [16]
  • Staphylococcus aureus [12]
  • Mycobacterium tuberculosis [8]
  • Trypanosoma brucei [3]
  • Trypanosoma brucei [3]
  • Aequorea victoria [3]
  • Synthetic construct [2]
  • Pomacea canaliculata [1]
  • Escherichia coli [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [28]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [10]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [12]
  • 500-1000 kDa [4]
  • 5-10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [24]
  • 2024 [3]
  • 2023 [1]
  • 2022 [3]

Author by name

  • Gragera M [32]
  • Bettati S [12]
  • Bizzarri AR [12]
  • Buoli Comani V [12]
  • Campanini B [12]
  • De Bei O [12]
  • Faggiano S [12]
  • Luisi BF [12]
  • Marchetti M [12]
  • Pancrazi F [12]
  • Paris G [12]
  • Ronda L [12]
  • Arranz R [9]
  • Fraga H [8]
  • Weinhaeupl K [8]
  • Carazo JM [7]
  • Melero R [6]
  • Weyand SN [6]
  • Bueno-carrasco MT [5]
  • Akopian T [4]
  • Bueno Carrasco Mt [4]
  • Bueno T [4]
  • Felix J [4]
  • Krandor O [4]
  • Rubin E [4]
  • Semchonok DA [4]
  • Soares R [4]
  • Weinhaupl K [4]
  • Afanasyev P [3]
  • Blaza JN [3]
  • Blundell TL [3]
  • Bonn-garcia S [3]
  • Buschiazzo A [3]
  • Carrington M [3]
  • Castro-hartmann P [3]
  • Chaitanya Vedithi S [3]
  • Chirgadze DY [3]
  • Corey RA [3]
  • Gusach A [3]
  • Herreros D [3]
  • Krieger JM [3]
  • Matusevicius M [3]
  • Medalia O [3]
  • Murshudov G [3]
  • Pluckthun A [3]
  • Sansom M [3]
  • Semchonok D [3]
  • Sorzano CO [3]
  • Sprenger T [3]
  • Stansfeld P [3]
  • Tate CG [3]
  • Ungogo MA [3]
  • Vacca S [3]
  • Warshamanage R [3]
  • Yamashita K [3]
  • De Koning Hp [3]
  • Arluison V [1]
  • Benitez GI [1]
  • Bordallo HN [1]
  • Brola TR [1]
  • Chichon FJ [1]
  • Chiumiento IR [1]
  • Cossa A [1]
  • Dreon MS [1]
  • Heras H [1]
  • Ituarte S [1]
  • Margadant C [1]
  • Martel A [1]
  • Matsuo T [1]
  • Moroy G [1]
  • Otero LH [1]
  • Peters J [1]
  • Rudic S [1]
  • Stam W [1]
  • Takagi J [1]
  • Velez M [1]
  • Vidarsson G [1]
  • Wien F [1]
  • Zarkadas E [1]
  • De Pereda Jm [1]
  • Van Der Maarel Jrc [1]
  • Van Der Meer F [1]
  • Van Der Schoot E [1]

Author by ORCID

  • Gragera M [26]
  • Bettati S [12]
  • Marchetti M [12]
  • Paris G [12]
  • Campanini B [12]
  • Buoli Comani V [12]
  • De Bei O [12]
  • Fraga H [8]
  • Arranz R [6]
  • Bueno-carrasco MT [5]
  • Rubin E [4]
  • Felix J [4]
  • Weinhaeupl K [4]
  • Weinhaupl K [4]
  • Semchonok DA [4]
  • Krieger JM [3]
  • Melero R [3]
  • Bonn-garcia S [3]
  • Buschiazzo A [3]
  • Vacca S [3]
  • Sorzano CO [3]
  • Carazo JM [3]
  • Medalia O [3]
  • Herreros D [3]
  • Pluckthun A [3]
  • Bueno Carrasco Mt [2]
  • Peters J [1]
  • Van Der Maarel Jrc [1]
  • Vidarsson G [1]
  • Wien F [1]
  • Takagi J [1]
  • Martel A [1]
  • Dreon MS [1]
  • Otero LH [1]
  • Margadant C [1]
  • Stam W [1]
  • Van Der Schoot E [1]
  • De Pereda Jm [1]
  • Moroy G [1]
  • Zarkadas E [1]
  • Velez M [1]
  • Bordallo HN [1]
  • Chichon FJ [1]
  • Rudic S [1]
  • Heras H [1]
  • Arluison V [1]

Journal

  • J STRUCT BIOL X [12]
  • ELIFE [6]
  • TO BE PUBLISHED [5]
  • J BIOL CHEM [4]
  • SCI ADV [3]
  • FEBS J [1]
  • NUCLEIC ACIDS RES [1]

Software

  • CRYOSPARC [17]
  • RELION [12]
  • GCTF [4]
  • UCSF CHIMERA [2]
  • XMIPP [2]
  • CISTEM [1]
  • SCIPION [1]

Microscope

  • TFS KRIOS [16]
  • FEI TALOS ARCTICA [8]
  • FEI TITAN KRIOS [4]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • GATAN K3 6K X 4K [12]
  • FEI FALCON III 4K X 4K [6]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • TFS FALCON 4I 4K X 4K [5]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [3]
  • MICROGRAPHS - SINGLE FRAME [3]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [3]

External links

  • PDB [29]
  • AlphaFold DB [24]
  • PDBe-Kb [24]
  • UniProt [24]
  • EMPIAR [15]
  • ChEBI [13]
  • Complex Portal [13]
  • Gene Ontology [13]
  • InterPro [12]
  • Pfam [10]
  • ChEMBL [8]
  • DrugBank [7]
  • EMDB [3]
Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
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EMD-55800
Download Map
3D View
Integrin AlphaIIbBeta3 bound to Fab of the anti-HPA-1a antibody 26.4
CryoEM
Release date: June 10, 2026
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 9td2
Q-score: 0.372

de Pereda JM, Stam W, Gragera M, van der Meer F, Chichon FJ, Zarkadas E, van der Schoot E, Vidarsson G, Takagi J, Margadant C

To Be Published

EMD-54546
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH alpha2beta :Hbtet complex
CryoEM
Release date: Nov. 12, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9s3p
Q-score: 0.462

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54563
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 right tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9s4f
Q-score: 0.277

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54565
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 left tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9s4i
Q-score: 0.303

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54566
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 right tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9s4j
Q-score: 0.298

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54567
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 left tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9s4k
Q-score: 0.313

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54585
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH alphabeta2 :Hbtet complex
CryoEM
Release date: Nov. 12, 2025
Resolution: 3.4 Å
EM Method: Single-particle

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54591
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH alpha2 :Hbtet complex - 3DVA component 0 right tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 3.6 Å
EM Method: Single-particle

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54613
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH alpha2 :Hbtet complex - 3DVA component 0 left tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 3.6 Å
EM Method: Single-particle

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

EMD-54618
Download Map
3D View
Raw data
EMPIAR-12925
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH alpha beta :Hbdim complex - 3DVA component 0 right tail
CryoEM
Release date: Nov. 12, 2025
Resolution: 4.1 Å
EM Method: Single-particle

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Luisi BF, Faggiano S, Bizzarri AR, Bettati S

J Struct Biol X (2025) 12 pp. 100138-100138 [ Pubmed: 41321687 DOI: doi:10.1016/j.yjsbx.2025.100138 ]

Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [29]
  • EMPIAR [3]

Current status

  • REL [32]

Sample type

  • Complex [29]
  • Protein [29]
  • Ligand [14]
  • DNA [1]

Organism

  • Homo sapiens [16]
  • Staphylococcus aureus [12]
  • Mycobacterium tuberculosis [8]
  • Trypanosoma brucei [3]
  • Trypanosoma brucei [3]
  • Aequorea victoria [3]
  • Synthetic construct [2]
  • Pomacea canaliculata [1]
  • Escherichia coli [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [28]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [10]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [12]
  • 500-1000 kDa [4]
  • 5-10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [24]
  • 2024 [3]
  • 2023 [1]
  • 2022 [3]

Author by name

  • Gragera M [32]
  • Bettati S [12]
  • Bizzarri AR [12]
  • Buoli Comani V [12]
  • Campanini B [12]
  • De Bei O [12]
  • Faggiano S [12]
  • Luisi BF [12]
  • Marchetti M [12]
  • Pancrazi F [12]
  • Paris G [12]
  • Ronda L [12]
  • Arranz R [9]
  • Fraga H [8]
  • Weinhaeupl K [8]
  • Carazo JM [7]
  • Melero R [6]
  • Weyand SN [6]
  • Bueno-carrasco MT [5]
  • Akopian T [4]
  • Bueno Carrasco Mt [4]
  • Bueno T [4]
  • Felix J [4]
  • Krandor O [4]
  • Rubin E [4]
  • Semchonok DA [4]
  • Soares R [4]
  • Weinhaupl K [4]
  • Afanasyev P [3]
  • Blaza JN [3]
  • Blundell TL [3]
  • Bonn-garcia S [3]
  • Buschiazzo A [3]
  • Carrington M [3]
  • Castro-hartmann P [3]
  • Chaitanya Vedithi S [3]
  • Chirgadze DY [3]
  • Corey RA [3]
  • Gusach A [3]
  • Herreros D [3]
  • Krieger JM [3]
  • Matusevicius M [3]
  • Medalia O [3]
  • Murshudov G [3]
  • Pluckthun A [3]
  • Sansom M [3]
  • Semchonok D [3]
  • Sorzano CO [3]
  • Sprenger T [3]
  • Stansfeld P [3]
  • Tate CG [3]
  • Ungogo MA [3]
  • Vacca S [3]
  • Warshamanage R [3]
  • Yamashita K [3]
  • De Koning Hp [3]
  • Arluison V [1]
  • Benitez GI [1]
  • Bordallo HN [1]
  • Brola TR [1]
  • Chichon FJ [1]
  • Chiumiento IR [1]
  • Cossa A [1]
  • Dreon MS [1]
  • Heras H [1]
  • Ituarte S [1]
  • Margadant C [1]
  • Martel A [1]
  • Matsuo T [1]
  • Moroy G [1]
  • Otero LH [1]
  • Peters J [1]
  • Rudic S [1]
  • Stam W [1]
  • Takagi J [1]
  • Velez M [1]
  • Vidarsson G [1]
  • Wien F [1]
  • Zarkadas E [1]
  • De Pereda Jm [1]
  • Van Der Maarel Jrc [1]
  • Van Der Meer F [1]
  • Van Der Schoot E [1]

Author by ORCID

  • Gragera M [26]
  • Bettati S [12]
  • Marchetti M [12]
  • Paris G [12]
  • Campanini B [12]
  • Buoli Comani V [12]
  • De Bei O [12]
  • Fraga H [8]
  • Arranz R [6]
  • Bueno-carrasco MT [5]
  • Rubin E [4]
  • Felix J [4]
  • Weinhaeupl K [4]
  • Weinhaupl K [4]
  • Semchonok DA [4]
  • Krieger JM [3]
  • Melero R [3]
  • Bonn-garcia S [3]
  • Buschiazzo A [3]
  • Vacca S [3]
  • Sorzano CO [3]
  • Carazo JM [3]
  • Medalia O [3]
  • Herreros D [3]
  • Pluckthun A [3]
  • Bueno Carrasco Mt [2]
  • Peters J [1]
  • Van Der Maarel Jrc [1]
  • Vidarsson G [1]
  • Wien F [1]
  • Takagi J [1]
  • Martel A [1]
  • Dreon MS [1]
  • Otero LH [1]
  • Margadant C [1]
  • Stam W [1]
  • Van Der Schoot E [1]
  • De Pereda Jm [1]
  • Moroy G [1]
  • Zarkadas E [1]
  • Velez M [1]
  • Bordallo HN [1]
  • Chichon FJ [1]
  • Rudic S [1]
  • Heras H [1]
  • Arluison V [1]

Journal

  • J STRUCT BIOL X [12]
  • ELIFE [6]
  • TO BE PUBLISHED [5]
  • J BIOL CHEM [4]
  • SCI ADV [3]
  • FEBS J [1]
  • NUCLEIC ACIDS RES [1]

Software

  • CRYOSPARC [17]
  • RELION [12]
  • GCTF [4]
  • UCSF CHIMERA [2]
  • XMIPP [2]
  • CISTEM [1]
  • SCIPION [1]

Microscope

  • TFS KRIOS [16]
  • FEI TALOS ARCTICA [8]
  • FEI TITAN KRIOS [4]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • GATAN K3 6K X 4K [12]
  • FEI FALCON III 4K X 4K [6]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • TFS FALCON 4I 4K X 4K [5]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [3]
  • MICROGRAPHS - SINGLE FRAME [3]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [3]

External links

  • PDB [29]
  • AlphaFold DB [24]
  • PDBe-Kb [24]
  • UniProt [24]
  • EMPIAR [15]
  • ChEBI [13]
  • Complex Portal [13]
  • Gene Ontology [13]
  • InterPro [12]
  • Pfam [10]
  • ChEMBL [8]
  • DrugBank [7]
  • EMDB [3]