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primary_citation_author:"Fukuda M"

Filter By

Current Database

  • EMDB [69]
  • EMPIAR [5]

Current status

  • REL [74]

Sample type

  • Complex [69]
  • Protein [67]
  • Ligand [46]
  • DNA [1]
  • RNA [1]

Organism

  • Homo sapiens [36]
  • Synthetic construct [27]
  • Mus musculus [24]
  • Vibrio cholerae [13]
  • Bos taurus [10]
  • Hyphochytrium catenoides [3]
  • Macaca fascicularis [3]
  • Rhodomonas lens [2]
  • Shewanella oneidensis [1]
  • Metagenome [1]
  • Shewanella oneidensis [1]

EM Method

  • Single-particle [69]

Resolution

  • ≥ 2Å and < 3Å [33]
  • ≥ 3Å and < 4Å [33]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [5]
  • 100-250 kDa [51]
  • 250-500 kDa [2]
  • 500-1000 kDa [4]

Release Date

  • 2026 [45]
  • 2025 [16]
  • 2023 [5]
  • 2022 [7]
  • 2019 [1]

Author by name

  • Fukuda M [50]
  • Kato HE [42]
  • Matsui TE [39]
  • Kobayashi K [37]
  • Yamashita K [37]
  • Kawakami K [34]
  • Ikeda H [30]
  • Inoue A [27]
  • Kugawa M [27]
  • Koyanagi J [26]
  • Arai H [24]
  • Ishikawa-fukuda M [24]
  • Kobilka BK [24]
  • Mitsutake A [24]
  • Miyoshi H [24]
  • Murai M [24]
  • Narita TJ [24]
  • Sumikama T [24]
  • Sumino A [24]
  • Tambo M [24]
  • Tatsumi M [24]
  • Yokoi S [24]
  • Barquera B [13]
  • Kato T [13]
  • Kishikawa J [13]
  • Kishikawa JI [13]
  • Kojima A [13]
  • Masuya T [13]
  • Okazaki KI [12]
  • Seki T [12]
  • Akisada S [11]
  • Mitsuoka K [11]
  • Nakano A [11]
  • Takahiro M [11]
  • Yokoyama K [11]
  • Kim S [9]
  • Dror RO [8]
  • Gu Y [7]
  • Kim YS [7]
  • Kobayashi N [7]
  • Nureki O [7]
  • Uemoto K [7]
  • Deisseroth K [6]
  • Kandori H [6]
  • Katayama K [6]
  • Kishi KE [6]
  • Kusakizako T [6]
  • Byrne EFX [5]
  • Inoue K [5]
  • Inoue M [5]
  • Iwata S [5]
  • Kim Y [5]
  • Konno M [5]
  • Nagata T [5]
  • Nishizawa T [5]
  • Paggi JM [5]
  • Ramakrishnan C [5]
  • Wang PY [5]
  • Futamata H [4]
  • Hayashi S [4]
  • Homma K [4]
  • Nakamura S [4]
  • Shikakura T [4]
  • Tajima S [4]
  • Takahashi S [4]
  • Tomita A [4]
  • Umeda R [4]
  • Fukunaga A [3]
  • Imai H [3]
  • Inoue WJ [3]
  • Ishikita H [3]
  • Jo Y [3]
  • Kim J [3]
  • Kise R [3]
  • Kobayashi T [3]
  • Nango E [3]
  • Noda T [3]
  • Nuemket N [3]
  • Ohashi S [3]
  • Olivucci M [3]
  • Sacchetta F [3]
  • Saito K [3]
  • Sugita Y [3]
  • Sugiura M [3]
  • Suno R [3]
  • Suomivuori CM [3]
  • Takaramoto S [3]
  • Tsujimura M [3]
  • Yang X [3]
  • Benster T [2]
  • Inoue W [2]
  • Liu K [2]
  • Lo M [2]
  • Nomura N [2]
  • Quirin S [2]
  • Shibata M [2]
  • Thadhani E [2]
  • Uemura T [2]
  • Altae-tran H [1]
  • Blanca B [1]

Author by ORCID

  • Yamashita K [34]
  • Fukuda M [32]
  • Kato HE [31]
  • Kawakami K [26]
  • Kobayashi K [26]
  • Inoue A [26]
  • Kobilka BK [24]
  • Mitsutake A [24]
  • Sumikama T [24]
  • Murai M [23]
  • Miyoshi H [22]
  • Ishikawa-fukuda M [22]
  • Barquera B [13]
  • Kishikawa JI [13]
  • Kato T [12]
  • Okazaki KI [12]
  • Masuya T [12]
  • Seki T [12]
  • Takahiro M [11]
  • Yokoyama K [10]
  • Dror RO [7]
  • Nagata T [5]
  • Kusakizako T [5]
  • Wang PY [5]
  • Nishizawa T [4]
  • Nureki O [4]
  • Shikakura T [3]
  • Tajima S [3]
  • Jo Y [3]
  • Homma K [3]
  • Takaramoto S [3]
  • Takahashi S [3]
  • Shibata M [2]
  • Byrne EFX [2]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kim S [2]
  • Ishikita H [2]
  • Nomura N [2]
  • Tsujimura M [2]
  • Ito T [1]
  • Takagi J [1]
  • Nishimasu H [1]
  • Dohmae N [1]
  • Kannan S [1]
  • Kawamoto A [1]
  • Makarova KS [1]
  • Zhang F [1]
  • Koonin EV [1]
  • Ishikawa J [1]
  • Mcfee D [1]

Journal

  • NATURE [24]
  • BIORXIV [19]
  • NAT COMMUN [19]
  • CELL [7]
  • SCIENCE [3]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
  • BIOCHEMISTRY [1]

Software

  • CRYOSPARC [33]
  • RELION [4]

Microscope

  • TFS KRIOS [59]
  • FEI TITAN KRIOS [9]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [69]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [52]
  • GATAN K3 6K X 4K [14]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [5]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [5]

External links

  • PDB [66]
  • AlphaFold DB [58]
  • UniProt [58]
  • PDBe-Kb [55]
  • Gene Ontology [48]
  • Pfam [42]
  • ChEBI [38]
  • ChEMBL [37]
  • DrugBank [36]
  • InterPro [24]
  • EMPIAR [10]
  • Complex Portal [8]
  • EMDB [5]
Sort by: Download
Showing 1 - 10 of 74. Page 1 of 8
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EMD-64397
Download Map
3D View
Cryo-EM structure of macaque red cone pigment with Q114N mutation
CryoEM
Release date: June 24, 2026
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 9upm
Q-score: 0.461

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64398
Download Map
3D View
Cryo-EM structure of macaque green cone pigment with Q114N mutation
CryoEM
Release date: June 24, 2026
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9upn
Q-score: 0.373

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMD-64399
Download Map
3D View
Cryo-EM structure of macaque green cone pigment wild type
CryoEM
Release date: June 24, 2026
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 9upo
Q-score: 0.349

Ohashi S, Katayama K, Kojima A, Yang X, Fukuda M, Sacchetta F, Suno R, Sugita Y, Nuemket N, Kim S, Kobayashi K, Imai H, Iwata S, Nango E, Kobayashi T, Noda T, Olivucci M, Kato HE, Kandori H

Science (2026) 392 pp. eadz3996-eadz3996 [ Pubmed: 42348681 DOI: doi:10.1126/science.adz3996 ]

EMPIAR-13484
Related EMDB
EMD-65580
Submitochondrial particles from bovine heart
Release date: June 21, 2026
Dataset size: 10.2 TB
Experiment type: EMDB

Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

Nat Commun (2026) [ DOI: 10.1038/s41467-026-70578-x Pubmed: 41844608 ]

Image sets:
  • Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
EMD-64904
Download Map
3D View
Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Go complex in nucleotide-free C state
Release date: June 3, 2026
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9vat
Q-score: 0.447

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64905
Download Map
3D View
Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Go complex in nucleotide-free NC state 1
Release date: June 3, 2026
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 9vau
Q-score: 0.515

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64906
Download Map
3D View
Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Go complex in nucleotide-free NC state 2
Release date: June 3, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9vav
Q-score: 0.511

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64907
Download Map
3D View
Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Gq delipidated complex in nucleotide-free C state
Release date: June 3, 2026
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 9vaw
Q-score: -0.028

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64908
Download Map
3D View
Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Gi1 complex in nucleotide-free C state 1
Release date: June 3, 2026
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 9vax
Q-score: 0.352

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

EMD-64909
Download Map
3D View
Cryo-EM structure of human Neurotensin Receptor 1 hNTSR1 -Gi1 complex in nucleotide-free C state 2
Release date: June 3, 2026
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9vay
Q-score: 0.361

Kobayashi K, Kawakami K, Matsui TE, Yokoi S, Fukuda M, Narita TJ, Arai H, Tambo M, Sumikama T, Tatsumi M, Yamashita K, Koyanagi J, Kugawa M, Ikeda H, Sumino A, Mitsutake A, Kobilka BK, Inoue A, Kato HE

Nature (2026) 652 pp. 812-821 [ DOI: doi:10.1038/s41586-026-10228-w Pubmed: 41813902 ]

Sort by: Download
Showing 1 - 10 of 74. Page 1 of 8
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [69]
  • EMPIAR [5]

Current status

  • REL [74]

Sample type

  • Complex [69]
  • Protein [67]
  • Ligand [46]
  • DNA [1]
  • RNA [1]

Organism

  • Homo sapiens [36]
  • Synthetic construct [27]
  • Mus musculus [24]
  • Vibrio cholerae [13]
  • Bos taurus [10]
  • Hyphochytrium catenoides [3]
  • Macaca fascicularis [3]
  • Rhodomonas lens [2]
  • Shewanella oneidensis [1]
  • Metagenome [1]
  • Shewanella oneidensis [1]

EM Method

  • Single-particle [69]

Resolution

  • ≥ 2Å and < 3Å [33]
  • ≥ 3Å and < 4Å [33]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [5]
  • 100-250 kDa [51]
  • 250-500 kDa [2]
  • 500-1000 kDa [4]

Release Date

  • 2026 [45]
  • 2025 [16]
  • 2023 [5]
  • 2022 [7]
  • 2019 [1]

Author by name

  • Fukuda M [50]
  • Kato HE [42]
  • Matsui TE [39]
  • Kobayashi K [37]
  • Yamashita K [37]
  • Kawakami K [34]
  • Ikeda H [30]
  • Inoue A [27]
  • Kugawa M [27]
  • Koyanagi J [26]
  • Arai H [24]
  • Ishikawa-fukuda M [24]
  • Kobilka BK [24]
  • Mitsutake A [24]
  • Miyoshi H [24]
  • Murai M [24]
  • Narita TJ [24]
  • Sumikama T [24]
  • Sumino A [24]
  • Tambo M [24]
  • Tatsumi M [24]
  • Yokoi S [24]
  • Barquera B [13]
  • Kato T [13]
  • Kishikawa J [13]
  • Kishikawa JI [13]
  • Kojima A [13]
  • Masuya T [13]
  • Okazaki KI [12]
  • Seki T [12]
  • Akisada S [11]
  • Mitsuoka K [11]
  • Nakano A [11]
  • Takahiro M [11]
  • Yokoyama K [11]
  • Kim S [9]
  • Dror RO [8]
  • Gu Y [7]
  • Kim YS [7]
  • Kobayashi N [7]
  • Nureki O [7]
  • Uemoto K [7]
  • Deisseroth K [6]
  • Kandori H [6]
  • Katayama K [6]
  • Kishi KE [6]
  • Kusakizako T [6]
  • Byrne EFX [5]
  • Inoue K [5]
  • Inoue M [5]
  • Iwata S [5]
  • Kim Y [5]
  • Konno M [5]
  • Nagata T [5]
  • Nishizawa T [5]
  • Paggi JM [5]
  • Ramakrishnan C [5]
  • Wang PY [5]
  • Futamata H [4]
  • Hayashi S [4]
  • Homma K [4]
  • Nakamura S [4]
  • Shikakura T [4]
  • Tajima S [4]
  • Takahashi S [4]
  • Tomita A [4]
  • Umeda R [4]
  • Fukunaga A [3]
  • Imai H [3]
  • Inoue WJ [3]
  • Ishikita H [3]
  • Jo Y [3]
  • Kim J [3]
  • Kise R [3]
  • Kobayashi T [3]
  • Nango E [3]
  • Noda T [3]
  • Nuemket N [3]
  • Ohashi S [3]
  • Olivucci M [3]
  • Sacchetta F [3]
  • Saito K [3]
  • Sugita Y [3]
  • Sugiura M [3]
  • Suno R [3]
  • Suomivuori CM [3]
  • Takaramoto S [3]
  • Tsujimura M [3]
  • Yang X [3]
  • Benster T [2]
  • Inoue W [2]
  • Liu K [2]
  • Lo M [2]
  • Nomura N [2]
  • Quirin S [2]
  • Shibata M [2]
  • Thadhani E [2]
  • Uemura T [2]
  • Altae-tran H [1]
  • Blanca B [1]

Author by ORCID

  • Yamashita K [34]
  • Fukuda M [32]
  • Kato HE [31]
  • Kawakami K [26]
  • Kobayashi K [26]
  • Inoue A [26]
  • Kobilka BK [24]
  • Mitsutake A [24]
  • Sumikama T [24]
  • Murai M [23]
  • Miyoshi H [22]
  • Ishikawa-fukuda M [22]
  • Barquera B [13]
  • Kishikawa JI [13]
  • Kato T [12]
  • Okazaki KI [12]
  • Masuya T [12]
  • Seki T [12]
  • Takahiro M [11]
  • Yokoyama K [10]
  • Dror RO [7]
  • Nagata T [5]
  • Kusakizako T [5]
  • Wang PY [5]
  • Nishizawa T [4]
  • Nureki O [4]
  • Shikakura T [3]
  • Tajima S [3]
  • Jo Y [3]
  • Homma K [3]
  • Takaramoto S [3]
  • Takahashi S [3]
  • Shibata M [2]
  • Byrne EFX [2]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kim S [2]
  • Ishikita H [2]
  • Nomura N [2]
  • Tsujimura M [2]
  • Ito T [1]
  • Takagi J [1]
  • Nishimasu H [1]
  • Dohmae N [1]
  • Kannan S [1]
  • Kawamoto A [1]
  • Makarova KS [1]
  • Zhang F [1]
  • Koonin EV [1]
  • Ishikawa J [1]
  • Mcfee D [1]

Journal

  • NATURE [24]
  • BIORXIV [19]
  • NAT COMMUN [19]
  • CELL [7]
  • SCIENCE [3]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
  • BIOCHEMISTRY [1]

Software

  • CRYOSPARC [33]
  • RELION [4]

Microscope

  • TFS KRIOS [59]
  • FEI TITAN KRIOS [9]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [69]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [52]
  • GATAN K3 6K X 4K [14]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [5]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [5]

External links

  • PDB [66]
  • AlphaFold DB [58]
  • UniProt [58]
  • PDBe-Kb [55]
  • Gene Ontology [48]
  • Pfam [42]
  • ChEBI [38]
  • ChEMBL [37]
  • DrugBank [36]
  • InterPro [24]
  • EMPIAR [10]
  • Complex Portal [8]
  • EMDB [5]