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primary_citation_author:"Ferreira RC"

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Current Database

  • EMDB [23]
  • EMPIAR [3]

Current status

  • REL [26]

Sample type

  • Protein [11]
  • Virus [10]
  • Sample [7]
  • Complex [6]
  • Ligand [1]

Organism

  • Enterobacteria phage t4 [7]
  • Tobacco mosaic virus [3]
  • Listeria phage a511 [3]
  • Caulobacter vibrioides [3]
  • Mus musculus [2]
  • Escherichia phage ms2 [2]
  • 2908151 [2]
  • Enterobacteria phage t4 sensu lato [1]

EM Method

  • Single-particle [17]
  • Helical reconstruction [6]

Resolution

  • < 2Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [3]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 250-500 kDa [2]
  • 500-1000 kDa [2]
  • 5-10 MDa [1]

Release Date

  • 2026 [2]
  • 2024 [8]
  • 2020 [3]
  • 2019 [3]
  • 2017 [1]
  • 2016 [9]

Author by name

  • Guerrero-ferreira RC [23]
  • Stahlberg H [14]
  • Leiman PG [13]
  • Nazarov S [10]
  • Shneider MM [10]
  • Taylor NMI [8]
  • Browning C [7]
  • Goldie KN [7]
  • Mohammed I [7]
  • Prokhorov NS [7]
  • Radecke J [7]
  • Kube M [5]
  • Kucukoglu B [5]
  • Lau K [5]
  • Leidl ML [5]
  • Muller-caspary K [5]
  • Myasnikov A [5]
  • Ophus C [5]
  • Ribet SM [5]
  • Sachse C [5]
  • Varnavides G [5]
  • Stalhberg H [4]
  • Dillard RS [3]
  • Guerrero-ferreira R [3]
  • Guerrero-ferreira RCG [3]
  • Hupfeld M [3]
  • Ishikawa T [3]
  • Ke Z [3]
  • Klumpp J [3]
  • Kube MK [3]
  • Küçükoğlu BK [3]
  • Lau KL [3]
  • Leidl MLL [3]
  • Loessner MJ [3]
  • Mohammed IM [3]
  • Montemayor EJ [3]
  • Myasnikov AM [3]
  • Müller-caspary KMC [3]
  • Nazarov SN [3]
  • Obbineni JM [3]
  • Ophus CO [3]
  • Parrell D [3]
  • Ploscariu NT [3]
  • Radecke JR [3]
  • Ribet SR [3]
  • Sachse CS [3]
  • Sanchez JC [3]
  • Shebelut CW [3]
  • Stahlberg HS [3]
  • Taylor NM [3]
  • Varnavides GV [3]
  • Wright ER [3]
  • Bachmann V [2]
  • Carratala A [2]
  • Chinmaya KV [2]
  • Ferreira RC [2]
  • Fotiadis D [2]
  • Harder D [2]
  • K V C [2]
  • Kohn T [2]
  • Kumar V [2]
  • Piccinini L [2]
  • Zhong Q [2]
  • Egelman EH [1]
  • Leiman P [1]
  • Nazarov SU [1]
  • Nazarov SY [1]
  • Wang F [1]
  • Zheng W [1]

Author by ORCID

  • Guerrero-ferreira RC [16]
  • Stahlberg H [7]
  • Leiman PG [6]
  • Varnavides G [5]
  • Leidl ML [5]
  • Sachse C [5]
  • Muller-caspary K [5]
  • Lau K [5]
  • Ophus C [5]
  • Myasnikov A [5]
  • Obbineni JM [3]
  • Shneider MM [3]
  • Ploscariu NT [3]
  • Ke Z [3]
  • Wright ER [3]
  • Taylor NM [3]
  • Klumpp J [3]
  • Carratala A [2]
  • Fotiadis D [2]
  • Radecke J [2]
  • Kohn T [2]
  • Zhong Q [2]
  • Taylor NMI [1]
  • Wang F [1]
  • Zheng W [1]

Journal

  • NAT COMMUN [7]
  • NATURE [7]
  • BIORXIV [3]
  • EMBO J [3]
  • J BACTERIOL [3]
  • TO BE PUBLISHED [3]
  • ENVIRON SCI TECHNOL [2]
  • STRUCTURE [1]

Software

  • RELION [19]
  • XMIPP [3]
  • CRYOSPARC [2]
  • CTFFIND [2]
  • EMAN2 [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [13]
  • FEI TECNAI F20 [5]
  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [8]
  • FEI EAGLE 4K X 4K [5]
  • DECTRIS ELA 1K X 0.5K [4]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 6K X 4K [3]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • DIFFRACTION IMAGES [3]

External links

  • PDB [23]
  • EMPIAR [5]
  • PDBe-Kb [4]
  • UniProt [4]
  • AlphaFold DB [3]
  • EMDB [3]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
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EMD-57762
Download Map
3D View
TMV Map using Pulsed Illumination
CryoEM
Release date: May 6, 2026
Resolution: 5.62 Å
EM Method: Single-particle

Kumar V, Radecke J, K V C, Mohammed I, Guerrero-Ferreira RC, Harder D, Fotiadis D, Stahlberg H

Nat Commun (2026) [ Pubmed: 42309992 DOI: doi:10.1038/s41467-026-74316-1 ]

EMD-57764
Download Map
3D View
TMV Map using Random Conventional Illumination
CryoEM
Release date: May 6, 2026
Resolution: 3.45 Å
EM Method: Single-particle

Kumar V, Radecke J, K V C, Mohammed I, Guerrero-Ferreira RC, Harder D, Fotiadis D, Stahlberg H

Nat Commun (2026) [ Pubmed: 42309992 DOI: doi:10.1038/s41467-026-74316-1 ]

EMPIAR-12234
Related EMDB
EMD-19425 EMD-19432 EMD-19885 EMD-19430
Low-dose cryo-electron ptychography of Tobacco Mosaic Virus at 6.1 mrad
Release date: Nov. 12, 2024
Dataset size: 128.4 GB
Experiment type: EMDB

Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H

bioRxiv (2024) [ DOI: 10.1101/2024.02.12.579607 ]

Image sets:
  • Diffraction patterns of Tobacco Mosaic Virus particles
EMPIAR-12233
Related EMDB
EMD-19425 EMD-19432 EMD-19885 EMD-19430
Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad
Release date: Nov. 6, 2024
Dataset size: 137.4 GB
Experiment type: EMDB

Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H

bioRxiv (2024) [ DOI: 10.1101/2024.02.12.579607 ]

Image sets:
  • Diffraction patterns of Phi-92 Bacteriophage particles
EMPIAR-12236
Related EMDB
EMD-19425 EMD-19432 EMD-19885 EMD-19430
Low-dose cryo-electron ptychography of Apoferritin at 4.0 mrad
Release date: Aug. 29, 2024
Dataset size: 83.8 GB
Experiment type: EMDB

Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H

bioRxiv (2024) [ DOI: 10.1101/2024.02.12.579607 ]

Image sets:
  • Diffraction patterns of Apoferritin particles
EMD-19425
Download Map
3D View
Raw data
EMPIAR-12233 EMPIAR-12236 EMPIAR-12234
Low-dose cryo-electron ptychographic reconstruction of apoferritin recorded with CSA of 4.0 mrad
CryoEM
Release date: May 22, 2024
Resolution: 5.8 Å
EM Method: Single-particle

Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H

Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]

EMD-19885
Download Map
3D View
Raw data
EMPIAR-12233 EMPIAR-12236 EMPIAR-12234
Low-dose cryo-electron ptychographic reconstruction of TMV recorded with CSA of 6.1 mrad
CryoEM
Release date: April 24, 2024
Resolution: 6.4 Å
EM Method: Helical reconstruction

Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H

Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]

EMD-19436
Download Map
3D View
Raw data
EMPIAR-11866
Cryo-EM structure of mouse heavy-chain apoferritin
CryoEM
Release date: March 13, 2024
Resolution: 1.09 Å
EM Method: Single-particle
Fitted PDBs: 8rqb

Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H

Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]

EMD-19430
Download Map
3D View
Raw data
EMPIAR-12233 EMPIAR-12236 EMPIAR-12234
Low-dose cryo-electron ptychographic reconstruction of phi92-sheath recorded with CSA of 5.1 mrad
CryoEM
Release date: Feb. 28, 2024
Resolution: 8.4 Å
EM Method: Helical reconstruction

Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H

Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]

EMD-19432
Download Map
3D View
Raw data
EMPIAR-12233 EMPIAR-12236 EMPIAR-12234
Low-dose cryo-electron ptychographic reconstruction of phi92-capsid recorded with CSA of 5.1 mrad
CryoEM
Release date: Feb. 28, 2024
Resolution: 12.3 Å
EM Method: Single-particle

Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H

Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]

Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [23]
  • EMPIAR [3]

Current status

  • REL [26]

Sample type

  • Protein [11]
  • Virus [10]
  • Sample [7]
  • Complex [6]
  • Ligand [1]

Organism

  • Enterobacteria phage t4 [7]
  • Tobacco mosaic virus [3]
  • Listeria phage a511 [3]
  • Caulobacter vibrioides [3]
  • Mus musculus [2]
  • Escherichia phage ms2 [2]
  • 2908151 [2]
  • Enterobacteria phage t4 sensu lato [1]

EM Method

  • Single-particle [17]
  • Helical reconstruction [6]

Resolution

  • < 2Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [3]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 250-500 kDa [2]
  • 500-1000 kDa [2]
  • 5-10 MDa [1]

Release Date

  • 2026 [2]
  • 2024 [8]
  • 2020 [3]
  • 2019 [3]
  • 2017 [1]
  • 2016 [9]

Author by name

  • Guerrero-ferreira RC [23]
  • Stahlberg H [14]
  • Leiman PG [13]
  • Nazarov S [10]
  • Shneider MM [10]
  • Taylor NMI [8]
  • Browning C [7]
  • Goldie KN [7]
  • Mohammed I [7]
  • Prokhorov NS [7]
  • Radecke J [7]
  • Kube M [5]
  • Kucukoglu B [5]
  • Lau K [5]
  • Leidl ML [5]
  • Muller-caspary K [5]
  • Myasnikov A [5]
  • Ophus C [5]
  • Ribet SM [5]
  • Sachse C [5]
  • Varnavides G [5]
  • Stalhberg H [4]
  • Dillard RS [3]
  • Guerrero-ferreira R [3]
  • Guerrero-ferreira RCG [3]
  • Hupfeld M [3]
  • Ishikawa T [3]
  • Ke Z [3]
  • Klumpp J [3]
  • Kube MK [3]
  • Küçükoğlu BK [3]
  • Lau KL [3]
  • Leidl MLL [3]
  • Loessner MJ [3]
  • Mohammed IM [3]
  • Montemayor EJ [3]
  • Myasnikov AM [3]
  • Müller-caspary KMC [3]
  • Nazarov SN [3]
  • Obbineni JM [3]
  • Ophus CO [3]
  • Parrell D [3]
  • Ploscariu NT [3]
  • Radecke JR [3]
  • Ribet SR [3]
  • Sachse CS [3]
  • Sanchez JC [3]
  • Shebelut CW [3]
  • Stahlberg HS [3]
  • Taylor NM [3]
  • Varnavides GV [3]
  • Wright ER [3]
  • Bachmann V [2]
  • Carratala A [2]
  • Chinmaya KV [2]
  • Ferreira RC [2]
  • Fotiadis D [2]
  • Harder D [2]
  • K V C [2]
  • Kohn T [2]
  • Kumar V [2]
  • Piccinini L [2]
  • Zhong Q [2]
  • Egelman EH [1]
  • Leiman P [1]
  • Nazarov SU [1]
  • Nazarov SY [1]
  • Wang F [1]
  • Zheng W [1]

Author by ORCID

  • Guerrero-ferreira RC [16]
  • Stahlberg H [7]
  • Leiman PG [6]
  • Varnavides G [5]
  • Leidl ML [5]
  • Sachse C [5]
  • Muller-caspary K [5]
  • Lau K [5]
  • Ophus C [5]
  • Myasnikov A [5]
  • Obbineni JM [3]
  • Shneider MM [3]
  • Ploscariu NT [3]
  • Ke Z [3]
  • Wright ER [3]
  • Taylor NM [3]
  • Klumpp J [3]
  • Carratala A [2]
  • Fotiadis D [2]
  • Radecke J [2]
  • Kohn T [2]
  • Zhong Q [2]
  • Taylor NMI [1]
  • Wang F [1]
  • Zheng W [1]

Journal

  • NAT COMMUN [7]
  • NATURE [7]
  • BIORXIV [3]
  • EMBO J [3]
  • J BACTERIOL [3]
  • TO BE PUBLISHED [3]
  • ENVIRON SCI TECHNOL [2]
  • STRUCTURE [1]

Software

  • RELION [19]
  • XMIPP [3]
  • CRYOSPARC [2]
  • CTFFIND [2]
  • EMAN2 [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [13]
  • FEI TECNAI F20 [5]
  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [8]
  • FEI EAGLE 4K X 4K [5]
  • DECTRIS ELA 1K X 0.5K [4]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 6K X 4K [3]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • DIFFRACTION IMAGES [3]

External links

  • PDB [23]
  • EMPIAR [5]
  • PDBe-Kb [4]
  • UniProt [4]
  • AlphaFold DB [3]
  • EMDB [3]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • SCOP2 [1]