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primary_citation_author:"Chao WCH"

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Current Database

  • EMDB [12]

Current status

  • REL [12]

Sample type

  • Complex [12]
  • Protein [12]
  • DNA [8]
  • Ligand [6]

Organism

  • Synthetic construct [8]
  • Xenopus laevis [8]
  • Saccharomyces cerevisiae [6]
  • Vibrio parahaemolyticus [3]
  • Saccharomyces cerevisiae [3]
  • Vibrio parahaemolyticus [1]

EM Method

  • Single-particle [12]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [9]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [8]

Release Date

  • 2026 [2]
  • 2023 [10]

Author by name

  • Chao WCH [12]
  • Dong S [12]
  • He J [12]
  • Li H [12]
  • Rasheed N [10]
  • Wang M [10]
  • Zhou N [10]
  • Wang C [9]
  • Zhang Y [9]
  • Zou B [9]
  • Gao X [7]
  • Guan J [7]
  • Huang J [7]
  • Li M [7]
  • Li W [7]
  • Shi X [7]
  • Wong KH [7]
  • Zhang J [7]
  • Zhang X [7]
  • Zhou M [7]
  • Dong SQ [3]
  • Li HD [3]
  • Tang L [3]
  • Wang ML [3]
  • Wu HW [3]
  • Zheng J [3]
  • Zhou NK [3]
  • Chao W [2]
  • Pei D [2]
  • Qin D [2]
  • Xie Y [2]
  • Yang X [2]
  • Yi L [2]
  • Zhang N [2]
  • Zhao H [2]
  • Zhou Y [2]
  • Chang X [1]
  • Jun H [1]
  • Meilin W [1]

Author by ORCID

  • He J [12]
  • Chao WCH [10]
  • Rasheed N [10]
  • Zhang X [7]
  • Tang L [3]

Journal

  • CELL RES [7]
  • CELL REP [3]
  • NUCLEIC ACIDS RES [2]

Software

  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI TALOS ARCTICA [4]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [12]

Film or detector model

  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [12]
  • PDBe-Kb [12]
  • UniProt [12]
  • InterPro [10]
  • AlphaFold DB [9]
  • Complex Portal [9]
  • Gene Ontology [9]
  • Pfam [9]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
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EMD-64742
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3D View
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
CryoEM
Release date: May 27, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9v2w
Q-score: 0.362

Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao WCH, Pei D, He J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag443 Pubmed: 42152683 ]

EMD-64741
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3D View
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
CryoEM
Release date: May 6, 2026
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9v2v
Q-score: 0.384

Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao WCH, Pei D, He J

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag443 Pubmed: 42152683 ]

EMD-37096
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3D View
Rpd3S histone deacetylase complex
CryoEM
Release date: Sept. 13, 2023
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8kc7
Q-score: 0.375

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-37122
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Rpd3S in complex with 187bp nucleosome
CryoEM
Release date: Sept. 13, 2023
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8kd2
Q-score: 0.35

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-37123
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3D View
Rpd3S in complex with nucleosome with H3K36MLA modification, H3K9Q mutation and 187bp DNA
CryoEM
Release date: Sept. 13, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8kd3
Q-score: 0.376

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-37124
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3D View
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class1
CryoEM
Release date: Sept. 13, 2023
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8kd4
Q-score: 0.373

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-37125
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3D View
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class2
CryoEM
Release date: Sept. 13, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8kd5
Q-score: 0.378

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-37126
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3D View
Rpd3S in complex with nucleosome with H3K36MLA modification and 187bp DNA, class3
CryoEM
Release date: Sept. 13, 2023
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8kd6
Q-score: 0.311

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-37127
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3D View
Rpd3S in complex with nucleosome with H3K36MLA modification and 167bp DNA
CryoEM
Release date: Sept. 13, 2023
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8kd7
Q-score: 0.324

Dong S, Li H, Wang M, Rasheed N, Zou B, Gao X, Guan J, Li W, Zhang J, Wang C, Zhou N, Shi X, Li M, Zhou M, Huang J, Li H, Zhang Y, Wong KH, Zhang X, Chao WCH, He J

Cell Res (2023) 33 pp. 790-801 [ DOI: doi:10.1038/s41422-023-00869-1 Pubmed: 37666978 ]

EMD-34540
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Type VI secretion system effector RhsP in its post-autoproteolysis and monomeric form
CryoEM
Release date: Jan. 18, 2023
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8h8a
Q-score: 0.49

Tang L, Dong S, Rasheed N, Wu HW, Zhou N, Li H, Wang M, Zheng J, He J, Chao WCH

Cell Rep (2022) 41 pp. 111732-111732 [ Pubmed: 36476863 DOI: doi:10.1016/j.celrep.2022.111732 ]

Sort by: Download
Showing 1 - 10 of 12. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [12]

Current status

  • REL [12]

Sample type

  • Complex [12]
  • Protein [12]
  • DNA [8]
  • Ligand [6]

Organism

  • Synthetic construct [8]
  • Xenopus laevis [8]
  • Saccharomyces cerevisiae [6]
  • Vibrio parahaemolyticus [3]
  • Saccharomyces cerevisiae [3]
  • Vibrio parahaemolyticus [1]

EM Method

  • Single-particle [12]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [9]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]
  • 500-1000 kDa [8]

Release Date

  • 2026 [2]
  • 2023 [10]

Author by name

  • Chao WCH [12]
  • Dong S [12]
  • He J [12]
  • Li H [12]
  • Rasheed N [10]
  • Wang M [10]
  • Zhou N [10]
  • Wang C [9]
  • Zhang Y [9]
  • Zou B [9]
  • Gao X [7]
  • Guan J [7]
  • Huang J [7]
  • Li M [7]
  • Li W [7]
  • Shi X [7]
  • Wong KH [7]
  • Zhang J [7]
  • Zhang X [7]
  • Zhou M [7]
  • Dong SQ [3]
  • Li HD [3]
  • Tang L [3]
  • Wang ML [3]
  • Wu HW [3]
  • Zheng J [3]
  • Zhou NK [3]
  • Chao W [2]
  • Pei D [2]
  • Qin D [2]
  • Xie Y [2]
  • Yang X [2]
  • Yi L [2]
  • Zhang N [2]
  • Zhao H [2]
  • Zhou Y [2]
  • Chang X [1]
  • Jun H [1]
  • Meilin W [1]

Author by ORCID

  • He J [12]
  • Chao WCH [10]
  • Rasheed N [10]
  • Zhang X [7]
  • Tang L [3]

Journal

  • CELL RES [7]
  • CELL REP [3]
  • NUCLEIC ACIDS RES [2]

Software

  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI TALOS ARCTICA [4]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [12]

Film or detector model

  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [12]
  • PDBe-Kb [12]
  • UniProt [12]
  • InterPro [10]
  • AlphaFold DB [9]
  • Complex Portal [9]
  • Gene Ontology [9]
  • Pfam [9]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]