Electron Microscopy Data Bank

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primary_citation_author:"Baker D"

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Synthetic construct [158]
Human immunodeficiency virus 1 [37]
Escherichia coli [29]
Macaca mulatta [23]
Homo sapiens [20]
Severe acute respiratory syndrome coronavirus [14]
Escherichia coli [8]
Escherichia coli [6]
Salmonella phage p22 [5]
Middle east respiratory syndrome-related coronavirus [5]
Thermoplasma acidophilum [5]
Sus scrofa [5]
Unidentified influenza virus [4]
Saccharomyces cerevisiae [4]
Clostridioides difficile [3]
Sarbecovirus sp. [3]
Methanococcus maripaludis [3]
Escherichia coli [3]
Pseudomonas phage phipa3 [3]
Mus musculus [2]
Mycolicibacterium smegmatis [2]
Saccharomyces cerevisiae [2]
Influenza a virus [1]
Staphylococcus aureus [1]
Respiratory syncytial virus [1]
Zaire ebolavirus [1]
Clostridium perfringens [1]
Influenza a virus [1]
Pseudomonas aeruginosa [1]
Thermotoga maritima [1]
Vibrio cholerae [1]
Salmonella enterica [1]
Severe acute respiratory syndrome coronavirus [1]
Alphainfluenzavirus influenzae [1]
Aequorea victoria [1]
Severe acute respiratory syndrome coronavirus [1]
Salmonella enterica [1]
Lama glama [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Baker D [288]
King NP [95]
Veesler D [76]
Antanasijevic A [71]
Ward AB [71]
Copps J [64]
Park YJ [64]
Borst AJ [63]
Moore JP [62]
Sanders RW [62]
Hsia Y [57]
Bera AK [55]
Courbet A [55]
Ueda G [55]
Bhabha G [54]
Kang A [53]
Cottrell CA [52]
Allen JD [49]
Berndsen ZT [49]
Carter L [49]
Crispin M [49]
Montefiori DC [49]
Sewall LM [48]
Sheffler W [48]
Coventry B [46]
Sankaran B [46]
Stewart L [42]
Kibler RD [41]
Li Z [40]
Carnathan DG [39]
Crotty S [39]
Schief WR [39]
Silvestri G [39]
Labranche C [37]
Bastidas R [36]
Bhiman J [36]
Burton DR [36]
Cannac F [36]
Georgeson E [36]
Groschel B [36]
Jimenez LE [36]
Ngo JT [36]
Perrett HR [36]
Rantalainen K [36]
Rocha RF [36]
Silverman JB [36]
Weidle C [36]
Yang YR [36]
De La Pena At [36]
Brunette TJ [35]
Bethel N [34]
Bick MJ [33]
Dimaio F [33]
Ekiert D [33]
Fallas JA [30]
Yang EC [29]
Carr KD [27]
Coudray N [27]
Redler RL [27]
Cao L [26]
Ekiert DC [26]
Klasse PJ [26]
Kollman JM [26]
Ruohola-baker H [26]
Yasmeen A [26]
Edman NI [25]
Ravichandran R [25]
Gerben S [24]
Lee S [23]
Dauparas J [22]
Leung PJY [22]
Li X [22]
Nagarajan D [22]
Ellis D [21]
Goreshnik I [20]
Vulovic I [20]
Xu J [20]
Liu Y [19]
Redler R [19]
Reggiano G [19]
Baek M [18]
Freedman BS [18]
Gillespie RA [18]
Graham BS [18]
Hutchinson GB [18]
Kanekiyo M [18]
Moyer A [18]
Nattermann U [18]
Nguyen H [18]
Schlichthaerle T [18]
Calise SJ [17]
Chow CM [17]
Davila-hernandez FA [17]
Dickinson MS [17]
Favor A [17]
Han HL [17]
Huddy TF [17]
Mchugh R [17]
Etemadi A [16]
Miranda M [16]

Author by ORCID

Baker D [222]
King NP [91]
Ward AB [68]
Park YJ [64]
Veesler D [61]
Ueda G [55]
Cottrell CA [52]
Hsia Y [51]
Copps J [51]
Crispin M [49]
Allen JD [49]
Bera AK [44]
Schief WR [39]
Carnathan DG [39]
Courbet A [38]
Moore JP [37]
Georgeson E [36]
Burton DR [36]
Silverman JB [36]
Perrett HR [36]
Rantalainen K [36]
Crotty S [36]
Labranche C [36]
Borst AJ [36]
Kibler RD [34]
Carter L [33]
Bethel N [30]
Stewart L [28]
Antanasijevic A [25]
Yang EC [24]
Ekiert D [24]
Sankaran B [24]
Bhabha G [24]
Edman NI [23]
Carr KD [19]
Kanekiyo M [18]
Graham BS [18]
Li Z [18]
Hutchinson GB [18]
Fallas JA [17]
Chow CM [15]
Leung PJY [15]
Miranda M [15]
Miranda MC [15]
Case JB [14]
Bethel NP [14]
Kollman JM [14]
Ruohola-baker H [14]
Diamond MS [14]
Brunette TJ [14]
Schlichthaerle T [14]
Klasse PJ [13]
Brouwer PJ [13]
Han HL [13]
Calise SJ [13]
Huddy TF [13]
Davila-hernandez FA [13]
Bick MJ [13]
Walls AC [13]
Mchugh R [13]
Wang S [12]
Marchiano S [12]
Phal A [12]
Zhao YT [12]
Sewall LM [12]
Sanders RW [12]
Turner HL [12]
Nemazee D [12]
Boyken SE [12]
Huang D [12]
Baek M [12]
Berndsen ZT [12]
Kollman J [11]
Lukoyanova N [11]
Cong Q [11]
Mace K [11]
Waksman G [11]
Redzej A [11]
Costa TRD [11]
Orlova EV [11]
Cao L [11]
Vulovic I [11]
Lee KK [9]
Mout R [9]
Weaver SJ [9]
Shen H [9]
Sahtoe DD [9]
Norris A [9]
Sahasrabuddhe A [9]
Busch F [9]
Coudray N [9]
Wysocki VH [9]
Jensen GJ [9]
Merten H [9]
Langan RA [9]
Yao Q [9]
Pluckthun A [9]
Li X [8]
Tajkhorshid E [8]
Hasdemir HS [8]

Journal

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Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

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EMD-70890

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C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA Mycobacterium smegmatis porin , dimerized along the native interface.

CryoEM

Release date: June 24, 2026
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 9ov5
Q-score: 0.474

Mihaljevic L, Kim DE, Bandawane PD, Eisenach HE, Borst AJ, Courbet A, Weidle C, Bettin E, Liu Q, Trejos AT, Majumder S, Muratspahic E, Schlichthaerle T, Exposit M, Li X, Lamb M, Murray ANA, Thomson NR, Chang P, Giacani L, Caimano MJ, Hawley KL, King NP, Baker D

To Be Published

EMD-70780

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CryoEM structure of the soluble-WRAPed membranous portion of MspA Mycobacterium smegmatis porin , dimerized along the native interface.

CryoEM

Release date: June 3, 2026
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 9orp
Q-score: 0.51

To Be Published

EMD-70787

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Designed one-component T 3 quasisymmetric protein nanocage

CryoEM

Release date: June 3, 2026
Resolution: 11.3 Å
EM Method: Single-particle

Lee S, Chmielewski D, Wang S, Kibler RD, Shin J, Carr A, Park YJ, Veesler D, Baker D

Nature (2026) [ Pubmed: 42162430 DOI: doi:10.1038/s41586-026-10554-z ]

EMD-70792

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Designed one-component T 3 quasisymmetric protein nanocage pentamer sub-particle region

CryoEM

Release date: June 3, 2026
Resolution: 7.1 Å
EM Method: Single-particle

Lee S, Chmielewski D, Wang S, Kibler RD, Shin J, Carr A, Park YJ, Veesler D, Baker D

Nature (2026) [ Pubmed: 42162430 DOI: doi:10.1038/s41586-026-10554-z ]

EMD-70797

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Designed one-component T 13 quasisymmetric protein nanocage pentamer sub-particle region

CryoEM

Release date: June 3, 2026
Resolution: 26.7 Å
EM Method: Subtomogram averaging

Lee S, Chmielewski D, Wang S, Kibler RD, Shin J, Carr A, Park YJ, Veesler D, Baker D

Nature (2026) [ Pubmed: 42162430 DOI: doi:10.1038/s41586-026-10554-z ]

EMD-70798

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Designed one-component T 13 quasisymmetric protein nanocage hexamer sub-particle region

CryoEM

Release date: June 3, 2026
Resolution: 20.2 Å
EM Method: Subtomogram averaging

Lee S, Chmielewski D, Wang S, Kibler RD, Shin J, Carr A, Park YJ, Veesler D, Baker D

Nature (2026) [ Pubmed: 42162430 DOI: doi:10.1038/s41586-026-10554-z ]

EMPIAR-13542

Release date: May 20, 2026
Dataset size: 382.1 GB
Experiment type: EMDB

Wang X, Guillem-Marti J, Kumar S, Lee DS, Cabrerizo-Aguado D, Werther R, Alamo KAE, Zhao YT, Nguyen A, Kopyeva I, Huang B, Li J, Hao Y, Li X, Brizuela-Velasco A, Murray A, Gerben S, Roy A, DeForest CA, Springer T, Ruohola-Baker H, Cooper JA, Campbell MG, Manero JM, Ginebra MP, Baker D

Advanced materials (Deerfield Beach, Fla.) (2025) 37 [ Pubmed: 40489013 DOI: 10.1002/adma.202500872 ]

Image sets:

Movie gain reference
Unaligned multi-frame images of integrin alpha5 beta1 and minibinder
Aligned particle stack of alpha5 beta1 integrin bound to minibinder

EMD-70605

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Two Component Protein Nano-Particle T 3 . De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied

CryoEM

Release date: May 20, 2026
Resolution: 17.45 Å
EM Method: Single-particle
Fitted PDBs: 9om3
Q-score: 0.053

Wang S, Xie Y, Chmielewski D, Weidle C, Shu T, Ahn G, Kibler RD, Hernandez C, Chen W, Duran DC, Carr A, Bera AK, Lee S, Decarreau J, Kang A, Brackenbrough E, Joyce E, Wu K, Borst AJ, Favor A, Huang B, DiMaio F, Holt LJ, Baker D