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natural_source_ncbi_code:"83333"

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Current Database

  • EMDB [1191]

Current status

  • REL [1191]

Sample type

  • Complex [1118]
  • Protein [905]
  • Ligand [561]
  • RNA [271]
  • DNA [182]
  • Cellular component [46]
  • Sample [28]
  • Cell [5]
  • Virus [5]
  • Other [1]

Organism

  • Escherichia coli [1191]
  • Escherichia coli [238]
  • Synthetic construct [88]
  • Homo sapiens [47]
  • Klebsiella pneumoniae [19]
  • Mus musculus [14]
  • Saccharomyces cerevisiae [14]
  • Xenopus laevis [14]
  • Escherichia coli [10]
  • Escherichia coli [9]
  • Staphylococcus aureus [8]
  • Enterobacteria phage t4 [7]
  • Escherichia phage lambda [7]
  • Klebsiella oxytoca [6]
  • (no species) [6]
  • (no species) [5]
  • Thermus thermophilus [5]
  • Staphylococcus aureus [5]
  • Escherichia coli [4]
  • Bacillus subtilis [4]
  • Geobacillus thermodenitrificans [4]
  • Saccharomyces cerevisiae [4]
  • Escherichia coli [4]
  • Lama glama [4]
  • Bos taurus [4]
  • Oryctolagus cuniculus [4]
  • Escherichia phage hk022 [3]
  • Dhillonvirus oekolampad [3]
  • Vicugna pacos [3]
  • Escherichia coli [3]
  • Escherichia coli [3]
  • Aequorea victoria [3]
  • Vibrio alginolyticus [3]
  • Escherichia coli [3]
  • Ovis aries [3]
  • Escherichia phage p1 [2]
  • Escherichia phage lambda [2]
  • Phage 21 [2]
  • Escherichia virus t7 [2]
  • Rhodospirillum rubrum [2]
  • (no species) [2]
  • Escherichia phage ms2 [2]
  • Geobacillus stearothermophilus [2]
  • Bacillus subtilis [2]
  • Escherichia coli [2]
  • Clostridium tetani [2]
  • Thermotoga maritima [2]
  • Escherichia phage mu [2]
  • Rhodospirillum rubrum [2]
  • Schizosaccharomyces pombe [2]
  • (no species) [2]
  • Escherichia coli [2]
  • Myxococcus fulvus [2]
  • Marburg marburgvirus [2]
  • Arabidopsis thaliana [2]
  • Drosophila melanogaster [2]
  • Shigella boydii [2]
  • Salmonella enterica [2]
  • Enterobacteria phage t4 [1]
  • Escherichia phage lambda [1]
  • Opitutus terrae [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Mycobacteroides abscessus [1]
  • Pseudomonas phage pp7 [1]
  • Enterobacteria phage sfi [1]
  • Empivirus allolyticum [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Streptococcus pneumoniae [1]
  • Escherichia coli [1]
  • Enterococcus faecalis [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Acetivibrio thermocellus [1]
  • Mycobacterium tuberculosis [1]
  • Rhodococcus rhodochrous [1]
  • Actinoplanes sp. [1]
  • Changjiang levi-like virus 3 [1]
  • Synthetic construct (code 12) [1]
  • Escherichia coli [1]
  • Pseudomonas aeruginosa [1]
  • Escherichia coli [1]
  • Escherichia virus t5 [1]
  • Escherichia virus t3 [1]
  • Dna molecule [1]
  • Photorhabdus australis [1]
  • Pseudomonas aeruginosa [1]
  • Escherichia phage phix174 [1]
  • Cyriopagopus schmidti [1]
  • Vibrio phage vb_vpap_m3 [1]
  • Psychrobacter phage vb_pmas_y8a [1]
  • Alphatrevirus id21 [1]

EM Method

  • Single-particle [1178]
  • Helical reconstruction [7]
  • Tomography [4]
  • Subtomogram averaging [2]

Resolution

  • < 2Å [5]
  • ≥ 2Å and < 3Å [235]
  • ≥ 3Å and < 4Å [577]
  • ≥ 4Å and < 5Å [147]
  • ≥ 5Å and < 6Å [91]
  • ≥ 6Å and < 8Å [80]
  • ≥ 8Å and < 12Å [29]
  • ≥ 12Å and < 16Å [9]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [1]

Model molecular weight

  • 0-50 kDa [3]
  • 50-100 kDa [23]
  • 100-250 kDa [238]
  • 250-500 kDa [210]
  • 500-1000 kDa [148]
  • 1-2 MDa [47]
  • 2-5 MDa [153]

Release Date

  • 2026 [120]
  • 2025 [196]
  • 2024 [161]
  • 2023 [180]
  • 2022 [116]
  • 2021 [132]
  • 2020 [118]
  • 2019 [56]
  • 2018 [34]
  • 2017 [37]
  • 2016 [16]
  • 2015 [9]
  • 2014 [10]
  • 2013 [3]
  • 2011 [2]
  • 2010 [1]

Author by name

  • Dong X [116]
  • Lyumkis D [113]
  • Sheng K [113]
  • Williamson JR [113]
  • Zhang X [108]
  • Li N [69]
  • Rabuck-gibbons JN [65]
  • Buck M [59]
  • Ye F [59]
  • Takacs M [58]
  • Weixlbaumer A [58]
  • Saint-andre C [56]
  • Gao F [55]
  • Lee J [54]
  • Korostelev AA [51]
  • Webster MW [51]
  • Rahil H [48]
  • Aiyer S [47]
  • Marquardt S [47]
  • Wiliamson JR [47]
  • Demo G [45]
  • Welsch S [43]
  • Charles K [42]
  • Chauvier A [42]
  • Graziadei A [42]
  • Miropolskaya N [42]
  • Rappsilber J [42]
  • Safarian S [42]
  • Walter NG [42]
  • Wu D [42]
  • Bald D [41]
  • Goojani HG [41]
  • Grund TN [41]
  • Hummer G [39]
  • Mehdipour AR [39]
  • Loveland AB [38]
  • Finke F [37]
  • Groh RR [37]
  • Reichhart TMB [37]
  • Shepherd M [37]
  • Zimmermann R [37]
  • Lin J [33]
  • Zhang Y [30]
  • Larsson DSD [29]
  • Selmer M [29]
  • Zhang J [28]
  • Carbone CE [27]
  • Svidritskiy E [24]
  • Davis JH [23]
  • Dong H [23]
  • Lopez-perez GS [23]
  • Lu G [23]
  • May MB [23]
  • Wang C [23]
  • Feng Y [22]
  • Li J [21]
  • Tang X [21]
  • Zhang Z [21]
  • Zhang K [20]
  • Rodnina MV [19]
  • Shi J [19]
  • Ebright RH [18]
  • Luo Q [18]
  • Sanyal S [18]
  • Wang J [18]
  • Hogbom M [17]
  • Kanchugal P S [17]
  • Madireddy R [17]
  • Pedersen BP [17]
  • Stokes DL [17]
  • Chang S [16]
  • Chen Z [16]
  • Connell SR [16]
  • Fucini P [16]
  • Gil-carton D [16]
  • Hou YM [16]
  • Huang Y [16]
  • Ilangovan A [16]
  • Iturrioz I [16]
  • Kaminishi T [16]
  • Kienesberger S [16]
  • Lopez-alonso JP [16]
  • Luisi BF [16]
  • Raffl S [16]
  • Spahn CMT [16]
  • Waksman G [16]
  • Widmalm G [16]
  • Williams SM [16]
  • Wiseman B [16]
  • Zechner EL [16]
  • Dong C [15]
  • Wilson DN [15]
  • Yuan B [15]
  • Zhang L [15]
  • Darst SA [14]
  • Dhimole N [14]
  • Larsen C [14]
  • Li Y [14]
  • Lin W [14]
  • Robinson CV [14]

Author by ORCID

  • Lyumkis D [113]
  • Williamson JR [65]
  • Li N [65]
  • Ye F [59]
  • Weixlbaumer A [58]
  • Zhang X [52]
  • Korostelev AA [51]
  • Aiyer S [47]
  • Sheng K [47]
  • Dong X [47]
  • Wiliamson JR [47]
  • Lee J [47]
  • Demo G [45]
  • Buck M [45]
  • Welsch S [43]
  • Rappsilber J [42]
  • Graziadei A [42]
  • Webster MW [42]
  • Takacs M [42]
  • Safarian S [42]
  • Charles K [42]
  • Walter NG [42]
  • Saint-andre C [42]
  • Rahil H [42]
  • Chauvier A [42]
  • Hummer G [39]
  • Finke F [37]
  • Groh RR [37]
  • Shepherd M [37]
  • Larsson DSD [29]
  • Loveland AB [23]
  • May MB [23]
  • Davis JH [23]
  • Lopez-perez GS [23]
  • Rodnina MV [19]
  • Sanyal S [18]
  • Feng Y [17]
  • Kaminishi T [16]
  • Stokes DL [16]
  • Hou YM [16]
  • Connell SR [16]
  • Pedersen BP [16]
  • Ilangovan A [16]
  • Wiseman B [16]
  • Iturrioz I [16]
  • Williams SM [16]
  • Waksman G [16]
  • Fucini P [16]
  • Zechner EL [16]
  • Lopez-alonso JP [16]
  • Kienesberger S [16]
  • Gil-carton D [16]
  • Wilson DN [15]
  • Tang X [14]
  • Dong H [14]
  • Chen Z [14]
  • Lin J [13]
  • Grigorieff N [13]
  • Tse E [13]
  • Hogbom M [12]
  • Robinson CV [12]
  • Selmer M [12]
  • Hardwick SW [12]
  • Oakley AJ [12]
  • Xu ZQ [12]
  • Schedlbauer A [11]
  • Widmalm G [11]
  • Zhang K [11]
  • Capuni R [11]
  • Sia Y [11]
  • Chen J [11]
  • Li J [11]
  • Gennis RB [11]
  • Chen K [11]
  • Diercks T [11]
  • Coudray N [11]
  • Zhu J [11]
  • Lavin JL [11]
  • Blanchard SC [11]
  • Macrae MR [11]
  • Huang Y [10]
  • Isom GL [10]
  • Loerke J [10]
  • Burger J [10]
  • Kaczmarczyk I [10]
  • Vinothkumar KR [10]
  • Zhang X [10]
  • Rawski M [10]
  • Jain S [10]
  • Glatt S [10]
  • Koziej L [10]
  • Gaik M [10]
  • Poulis P [10]
  • Ge X [9]
  • Gamper Jr Hb [9]
  • Koronakis V [9]
  • Zhang Y [9]
  • Chen X [9]
  • Qin B [9]
  • Yang W [9]

Journal

  • NAT COMMUN [265]
  • TO BE PUBLISHED [161]
  • PNAS [123]
  • SCIENCE [65]
  • NAT STRUCT MOL BIOL [55]
  • MOL CELL [49]
  • SCI ADV [48]
  • NATURE [46]
  • NAT CHEM BIOL [44]
  • ELIFE [39]
  • NUCLEIC ACIDS RES [35]
  • CELL [25]
  • J MOL BIOL [23]
  • BIORXIV [19]
  • BIOMOLECULES [18]
  • COMMUN BIOL [16]
  • PLOS BIOL [16]
  • STRUCTURE [14]
  • J BIOL CHEM [13]
  • RNA [11]
  • EMBO J [10]
  • J AM CHEM SOC [10]
  • MBIO [9]
  • NAT METHODS [8]
  • CELL REP [7]
  • NAT MICROBIOL [7]
  • ADV SCI [6]
  • CELL RES [6]
  • RES [5]
  • SCI REP [5]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • CHEM SCI [3]
  • J BACTERIOL [3]
  • PLOS ONE [3]
  • ACS INFECT DIS. [2]
  • ACS NANO [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • ANGEW CHEM INT ED ENGL [2]
  • BIOCHEM BIOPHYS RES COMMUN [2]
  • CELL DISCOV [2]
  • CURR RES STRUCT BIOL [2]
  • FEBS J [2]
  • ISCIENCE [2]
  • J HAZARD MATER [2]
  • J STRUCT BIOL [2]
  • PHILOS.TRANS.R.SOC.LOND.B BIOL.SCI. [2]
  • PROTEIN SCI [2]
  • SIGNAL TRANSDUCT TARGET THER [2]
  • ACS CENTRAL SCIENCE [1]
  • ACTA PHARMACOL.SIN. [1]
  • BIOMEDICINES [1]
  • FASEB J [1]
  • INT J MOL SCI [1]
  • IUCRJ [1]
  • J CELL BIOL [1]
  • MEDCOMM (2020) [1]
  • METHODS [1]
  • NANOSCALE ADV [1]
  • NEURON [1]

Software

  • CRYOSPARC [406]
  • RELION [282]
  • FREALIGN [41]
  • CTFFIND [40]
  • WARP [35]
  • GCTF [27]
  • CRYODRGN [23]
  • SPIDER [18]
  • CISTEM [17]
  • COOT [9]
  • UCSF CHIMERA [8]
  • PHENIX [7]
  • CCP4 PACKAGE [4]
  • EMAN1 [4]
  • DIREX [3]
  • IMOD [3]
  • XMIPP3, EMAN2 [3]
  • XMIPP3.1, RELION1.3 [3]
  • CHIMERA [2]
  • CTFFIND4 [2]
  • E2HELIXBOXER [2]
  • EMAN2, SPARX [2]
  • FLEX-EM [2]
  • IMAGIC [2]
  • MDFF [2]
  • SITUS [2]
  • SPARX [2]
  • CHIMERA, IMODFIT [1]
  • CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
  • CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
  • EMAN2 [1]
  • FREALIGN, EMAN2 [1]
  • IMAGIC-5 SPIDER [1]
  • IMOD, PEET, CTFFIND3D, EMAN, BOXER , FPM, SPIDER [1]
  • ISOLDE [1]
  • REFMAC [1]
  • RELION, CTFFIND3 [1]
  • RELION2.1 [1]
  • SPDER [1]
  • SPIDER, RELION [1]

Microscope

  • FEI TITAN KRIOS [677]
  • TFS KRIOS [297]
  • FEI TALOS ARCTICA [68]
  • FEI POLARA 300 [36]
  • TFS GLACIOS [36]
  • FEI TECNAI ARCTICA [11]
  • FEI TITAN [11]
  • FEI TECNAI F20 [10]
  • JEOL CRYO ARM 300 [10]
  • JEOL CRYO ARM 200 [5]
  • FEI TECNAI 20 [4]
  • FEI/PHILIPS CM300FEG/HE [4]
  • FEI TECNAI F30 [3]
  • JEOL 3200FSC [3]
  • TFS TALOS [3]
  • TFS TALOS L120C [3]
  • JEOL 1400 [2]
  • JEOL 2200FSC [2]
  • JEOL 3000SFF [2]
  • OTHER [2]
  • FEI/PHILIPS CM300FEG/T [1]
  • HITACHI H-9500SD [1]
  • JEOL 2100 [1]

Electron Source

  • FIELD EMISSION GUN [1182]
  • LAB6 [7]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [361]
  • GATAN K3 BIOQUANTUM 6K X 4K [244]
  • GATAN K3 6K X 4K [239]
  • FEI FALCON III 4K X 4K [98]
  • GATAN K2 QUANTUM 4K X 4K [69]
  • FEI FALCON IV 4K X 4K [65]
  • FEI FALCON II 4K X 4K [38]
  • TFS FALCON 4I 4K X 4K [16]
  • GATAN K2 BASE 4K X 4K [12]
  • FEI EAGLE 4K X 4K [11]
  • GATAN ULTRASCAN 4000 4K X 4K [10]
  • GATAN K3 BIOCONTINUUM 6K X 4K [7]
  • KODAK SO-163 FILM [6]
  • DIRECT ELECTRON DE-20 5K X 3K [3]
  • FEI CETA 4K X 4K [3]
  • TVIPS TEMCAM-F416 4K X 4K [3]
  • GATAN K2 4K X 4K [2]
  • GENERIC GATAN [2]
  • FEI FALCON I 4K X 4K [1]
  • OTHER [1]
  • TVIPS TEMCAM-F224 2K X 2K [1]

External links

  • PDB [1186]
  • UniProt [890]
  • AlphaFold DB [881]
  • PDBe-Kb [860]
  • Pfam [784]
  • Gene Ontology [762]
  • InterPro [758]
  • ChEBI [531]
  • Complex Portal [523]
  • DrugBank [494]
  • ChEMBL [463]
  • EMPIAR [125]
  • CATH [24]
  • SCOP2 [8]
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Showing 1 - 10 of 1191. Page 1 of 120
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EMD-65370
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3D View
The structure of akg bound OXGR1
CryoEM
Release date: July 15, 2026
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 9vus
Q-score: 0.588

Liang EY, Su Q, Ma TS, Chen ZY, Tang XF

To Be Published

EMD-65376
Download Map
3D View
The structure of ITN bound OXGR1
CryoEM
Release date: July 15, 2026
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 9vv6
Q-score: 0.531

Su Q, Liang EY, Ma TS, Chen ZY, Tang XF

To Be Published

EMD-74964
Download Map
3D View
Icosahedral Capsid assembly of phage Oekolampad Bas18
CryoEM
Release date: July 15, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9zys

Kumaran R, McFarlane H, Ewenson CJ, McJarrow-Keller K, Eruera AR, Strauss M, Bostina M

J Mol Biol (2026) pp. 169937-169937 [ DOI: doi:10.1016/j.jmb.2026.169937 Pubmed: 42401365 ]

EMD-75103
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3D View
C12 Portal assembly of phage Oekolampad Bas18
CryoEM
Release date: July 15, 2026
Resolution: 4.46 Å
EM Method: Single-particle
Fitted PDBs: 10ec
Q-score: 0.439

Kumaran R, McFarlane H, Ewenson CJ, McJarrow-Keller K, Eruera AR, Strauss M, Bostina M

J Mol Biol (2026) pp. 169937-169937 [ DOI: doi:10.1016/j.jmb.2026.169937 Pubmed: 42401365 ]

EMD-75266
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3D View
C6 Neck assembly of phage Oekolampad Bas18
CryoEM
Release date: July 15, 2026
Resolution: 5.83 Å
EM Method: Single-particle
Fitted PDBs: 10lj
Q-score: 0.345

Kumaran R, McFarlane H, Ewenson CJ, McJarrow-Keller K, Eruera AR, Strauss M, Bostina M

J Mol Biol (2026) pp. 169937-169937 [ DOI: doi:10.1016/j.jmb.2026.169937 Pubmed: 42401365 ]

EMD-58426
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3D View
P2a-state of wild type human mitochondrial LONP1 protease with bound substrate protein, ADP and aluminum fluoride
CryoEM
Release date: July 1, 2026
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 31ib
Q-score: 0.574

Schenck N, Filipcik P, Abrahams JP

bioRxiv (2026) [ DOI: doi:10.64898/2026.05.18.725877 ]

EMD-55775
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3D View
apo state of CydDC in nanodisc
CryoEM
Release date: June 24, 2026
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 9tby
Q-score: 0.417

Yang L, Zhang C, Lyu M, Luo Y, Zhang J, Chen Y, Luo L, Qiao W, Li X, Zhou Y, Wei Z, Xiao Y, Niu Q, Zhou J, He G, Ying B, Su Z, Chen H, Tang X, Dong H

Adv Sci (2026) pp. e76081-e76081 [ Pubmed: 42272423 DOI: doi:10.1002/advs.76081 ]

EMD-58290
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3D View
Reduced E.coli aerotaxis receptor
CryoEM
Release date: June 24, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 31cj
Q-score: 0.477

Olsthoorn FA, Muok AR, Maschmann ZA, Xu Y, Chandrasekaran S, Dunleavy R, Crane BR

bioRxiv (2026) [ Pubmed: 42244600 DOI: doi:10.64898/2026.05.25.727702 ]

EMD-58291
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3D View
Oxidized E.coli aerotaxis receptor in MH-cap free state
CryoEM
Release date: June 24, 2026
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 31ck
Q-score: 0.413

Olsthoorn FA, Muok AR, Maschmann ZA, Xu Y, Chandrasekaran S, Dunleavy R, Crane BR

bioRxiv (2026) [ Pubmed: 42244600 DOI: doi:10.64898/2026.05.25.727702 ]

EMD-65075
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3D View
Structure of the Choline Transporter BetT under Acidic Conditions
CryoEM
Release date: June 24, 2026
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 9vi1
Q-score: 0.524

Shi DJ, Cheng XQ, Jiang WX, Xing Q

To Be Published

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Filter By

Current Database

  • EMDB [1191]

Current status

  • REL [1191]

Sample type

  • Complex [1118]
  • Protein [905]
  • Ligand [561]
  • RNA [271]
  • DNA [182]
  • Cellular component [46]
  • Sample [28]
  • Cell [5]
  • Virus [5]
  • Other [1]

Organism

  • Escherichia coli [1191]
  • Escherichia coli [238]
  • Synthetic construct [88]
  • Homo sapiens [47]
  • Klebsiella pneumoniae [19]
  • Mus musculus [14]
  • Saccharomyces cerevisiae [14]
  • Xenopus laevis [14]
  • Escherichia coli [10]
  • Escherichia coli [9]
  • Staphylococcus aureus [8]
  • Enterobacteria phage t4 [7]
  • Escherichia phage lambda [7]
  • Klebsiella oxytoca [6]
  • (no species) [6]
  • (no species) [5]
  • Thermus thermophilus [5]
  • Staphylococcus aureus [5]
  • Escherichia coli [4]
  • Bacillus subtilis [4]
  • Geobacillus thermodenitrificans [4]
  • Saccharomyces cerevisiae [4]
  • Escherichia coli [4]
  • Lama glama [4]
  • Bos taurus [4]
  • Oryctolagus cuniculus [4]
  • Escherichia phage hk022 [3]
  • Dhillonvirus oekolampad [3]
  • Vicugna pacos [3]
  • Escherichia coli [3]
  • Escherichia coli [3]
  • Aequorea victoria [3]
  • Vibrio alginolyticus [3]
  • Escherichia coli [3]
  • Ovis aries [3]
  • Escherichia phage p1 [2]
  • Escherichia phage lambda [2]
  • Phage 21 [2]
  • Escherichia virus t7 [2]
  • Rhodospirillum rubrum [2]
  • (no species) [2]
  • Escherichia phage ms2 [2]
  • Geobacillus stearothermophilus [2]
  • Bacillus subtilis [2]
  • Escherichia coli [2]
  • Clostridium tetani [2]
  • Thermotoga maritima [2]
  • Escherichia phage mu [2]
  • Rhodospirillum rubrum [2]
  • Schizosaccharomyces pombe [2]
  • (no species) [2]
  • Escherichia coli [2]
  • Myxococcus fulvus [2]
  • Marburg marburgvirus [2]
  • Arabidopsis thaliana [2]
  • Drosophila melanogaster [2]
  • Shigella boydii [2]
  • Salmonella enterica [2]
  • Enterobacteria phage t4 [1]
  • Escherichia phage lambda [1]
  • Opitutus terrae [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Mycobacteroides abscessus [1]
  • Pseudomonas phage pp7 [1]
  • Enterobacteria phage sfi [1]
  • Empivirus allolyticum [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Streptococcus pneumoniae [1]
  • Escherichia coli [1]
  • Enterococcus faecalis [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Acetivibrio thermocellus [1]
  • Mycobacterium tuberculosis [1]
  • Rhodococcus rhodochrous [1]
  • Actinoplanes sp. [1]
  • Changjiang levi-like virus 3 [1]
  • Synthetic construct (code 12) [1]
  • Escherichia coli [1]
  • Pseudomonas aeruginosa [1]
  • Escherichia coli [1]
  • Escherichia virus t5 [1]
  • Escherichia virus t3 [1]
  • Dna molecule [1]
  • Photorhabdus australis [1]
  • Pseudomonas aeruginosa [1]
  • Escherichia phage phix174 [1]
  • Cyriopagopus schmidti [1]
  • Vibrio phage vb_vpap_m3 [1]
  • Psychrobacter phage vb_pmas_y8a [1]
  • Alphatrevirus id21 [1]

EM Method

  • Single-particle [1178]
  • Helical reconstruction [7]
  • Tomography [4]
  • Subtomogram averaging [2]

Resolution

  • < 2Å [5]
  • ≥ 2Å and < 3Å [235]
  • ≥ 3Å and < 4Å [577]
  • ≥ 4Å and < 5Å [147]
  • ≥ 5Å and < 6Å [91]
  • ≥ 6Å and < 8Å [80]
  • ≥ 8Å and < 12Å [29]
  • ≥ 12Å and < 16Å [9]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [8]
  • ≥ 30Å [1]

Model molecular weight

  • 0-50 kDa [3]
  • 50-100 kDa [23]
  • 100-250 kDa [238]
  • 250-500 kDa [210]
  • 500-1000 kDa [148]
  • 1-2 MDa [47]
  • 2-5 MDa [153]

Release Date

  • 2026 [120]
  • 2025 [196]
  • 2024 [161]
  • 2023 [180]
  • 2022 [116]
  • 2021 [132]
  • 2020 [118]
  • 2019 [56]
  • 2018 [34]
  • 2017 [37]
  • 2016 [16]
  • 2015 [9]
  • 2014 [10]
  • 2013 [3]
  • 2011 [2]
  • 2010 [1]

Author by name

  • Dong X [116]
  • Lyumkis D [113]
  • Sheng K [113]
  • Williamson JR [113]
  • Zhang X [108]
  • Li N [69]
  • Rabuck-gibbons JN [65]
  • Buck M [59]
  • Ye F [59]
  • Takacs M [58]
  • Weixlbaumer A [58]
  • Saint-andre C [56]
  • Gao F [55]
  • Lee J [54]
  • Korostelev AA [51]
  • Webster MW [51]
  • Rahil H [48]
  • Aiyer S [47]
  • Marquardt S [47]
  • Wiliamson JR [47]
  • Demo G [45]
  • Welsch S [43]
  • Charles K [42]
  • Chauvier A [42]
  • Graziadei A [42]
  • Miropolskaya N [42]
  • Rappsilber J [42]
  • Safarian S [42]
  • Walter NG [42]
  • Wu D [42]
  • Bald D [41]
  • Goojani HG [41]
  • Grund TN [41]
  • Hummer G [39]
  • Mehdipour AR [39]
  • Loveland AB [38]
  • Finke F [37]
  • Groh RR [37]
  • Reichhart TMB [37]
  • Shepherd M [37]
  • Zimmermann R [37]
  • Lin J [33]
  • Zhang Y [30]
  • Larsson DSD [29]
  • Selmer M [29]
  • Zhang J [28]
  • Carbone CE [27]
  • Svidritskiy E [24]
  • Davis JH [23]
  • Dong H [23]
  • Lopez-perez GS [23]
  • Lu G [23]
  • May MB [23]
  • Wang C [23]
  • Feng Y [22]
  • Li J [21]
  • Tang X [21]
  • Zhang Z [21]
  • Zhang K [20]
  • Rodnina MV [19]
  • Shi J [19]
  • Ebright RH [18]
  • Luo Q [18]
  • Sanyal S [18]
  • Wang J [18]
  • Hogbom M [17]
  • Kanchugal P S [17]
  • Madireddy R [17]
  • Pedersen BP [17]
  • Stokes DL [17]
  • Chang S [16]
  • Chen Z [16]
  • Connell SR [16]
  • Fucini P [16]
  • Gil-carton D [16]
  • Hou YM [16]
  • Huang Y [16]
  • Ilangovan A [16]
  • Iturrioz I [16]
  • Kaminishi T [16]
  • Kienesberger S [16]
  • Lopez-alonso JP [16]
  • Luisi BF [16]
  • Raffl S [16]
  • Spahn CMT [16]
  • Waksman G [16]
  • Widmalm G [16]
  • Williams SM [16]
  • Wiseman B [16]
  • Zechner EL [16]
  • Dong C [15]
  • Wilson DN [15]
  • Yuan B [15]
  • Zhang L [15]
  • Darst SA [14]
  • Dhimole N [14]
  • Larsen C [14]
  • Li Y [14]
  • Lin W [14]
  • Robinson CV [14]

Author by ORCID

  • Lyumkis D [113]
  • Williamson JR [65]
  • Li N [65]
  • Ye F [59]
  • Weixlbaumer A [58]
  • Zhang X [52]
  • Korostelev AA [51]
  • Aiyer S [47]
  • Sheng K [47]
  • Dong X [47]
  • Wiliamson JR [47]
  • Lee J [47]
  • Demo G [45]
  • Buck M [45]
  • Welsch S [43]
  • Rappsilber J [42]
  • Graziadei A [42]
  • Webster MW [42]
  • Takacs M [42]
  • Safarian S [42]
  • Charles K [42]
  • Walter NG [42]
  • Saint-andre C [42]
  • Rahil H [42]
  • Chauvier A [42]
  • Hummer G [39]
  • Finke F [37]
  • Groh RR [37]
  • Shepherd M [37]
  • Larsson DSD [29]
  • Loveland AB [23]
  • May MB [23]
  • Davis JH [23]
  • Lopez-perez GS [23]
  • Rodnina MV [19]
  • Sanyal S [18]
  • Feng Y [17]
  • Kaminishi T [16]
  • Stokes DL [16]
  • Hou YM [16]
  • Connell SR [16]
  • Pedersen BP [16]
  • Ilangovan A [16]
  • Wiseman B [16]
  • Iturrioz I [16]
  • Williams SM [16]
  • Waksman G [16]
  • Fucini P [16]
  • Zechner EL [16]
  • Lopez-alonso JP [16]
  • Kienesberger S [16]
  • Gil-carton D [16]
  • Wilson DN [15]
  • Tang X [14]
  • Dong H [14]
  • Chen Z [14]
  • Lin J [13]
  • Grigorieff N [13]
  • Tse E [13]
  • Hogbom M [12]
  • Robinson CV [12]
  • Selmer M [12]
  • Hardwick SW [12]
  • Oakley AJ [12]
  • Xu ZQ [12]
  • Schedlbauer A [11]
  • Widmalm G [11]
  • Zhang K [11]
  • Capuni R [11]
  • Sia Y [11]
  • Chen J [11]
  • Li J [11]
  • Gennis RB [11]
  • Chen K [11]
  • Diercks T [11]
  • Coudray N [11]
  • Zhu J [11]
  • Lavin JL [11]
  • Blanchard SC [11]
  • Macrae MR [11]
  • Huang Y [10]
  • Isom GL [10]
  • Loerke J [10]
  • Burger J [10]
  • Kaczmarczyk I [10]
  • Vinothkumar KR [10]
  • Zhang X [10]
  • Rawski M [10]
  • Jain S [10]
  • Glatt S [10]
  • Koziej L [10]
  • Gaik M [10]
  • Poulis P [10]
  • Ge X [9]
  • Gamper Jr Hb [9]
  • Koronakis V [9]
  • Zhang Y [9]
  • Chen X [9]
  • Qin B [9]
  • Yang W [9]

Journal

  • NAT COMMUN [265]
  • TO BE PUBLISHED [161]
  • PNAS [123]
  • SCIENCE [65]
  • NAT STRUCT MOL BIOL [55]
  • MOL CELL [49]
  • SCI ADV [48]
  • NATURE [46]
  • NAT CHEM BIOL [44]
  • ELIFE [39]
  • NUCLEIC ACIDS RES [35]
  • CELL [25]
  • J MOL BIOL [23]
  • BIORXIV [19]
  • BIOMOLECULES [18]
  • COMMUN BIOL [16]
  • PLOS BIOL [16]
  • STRUCTURE [14]
  • J BIOL CHEM [13]
  • RNA [11]
  • EMBO J [10]
  • J AM CHEM SOC [10]
  • MBIO [9]
  • NAT METHODS [8]
  • CELL REP [7]
  • NAT MICROBIOL [7]
  • ADV SCI [6]
  • CELL RES [6]
  • RES [5]
  • SCI REP [5]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • CHEM SCI [3]
  • J BACTERIOL [3]
  • PLOS ONE [3]
  • ACS INFECT DIS. [2]
  • ACS NANO [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • ANGEW CHEM INT ED ENGL [2]
  • BIOCHEM BIOPHYS RES COMMUN [2]
  • CELL DISCOV [2]
  • CURR RES STRUCT BIOL [2]
  • FEBS J [2]
  • ISCIENCE [2]
  • J HAZARD MATER [2]
  • J STRUCT BIOL [2]
  • PHILOS.TRANS.R.SOC.LOND.B BIOL.SCI. [2]
  • PROTEIN SCI [2]
  • SIGNAL TRANSDUCT TARGET THER [2]
  • ACS CENTRAL SCIENCE [1]
  • ACTA PHARMACOL.SIN. [1]
  • BIOMEDICINES [1]
  • FASEB J [1]
  • INT J MOL SCI [1]
  • IUCRJ [1]
  • J CELL BIOL [1]
  • MEDCOMM (2020) [1]
  • METHODS [1]
  • NANOSCALE ADV [1]
  • NEURON [1]

Software

  • CRYOSPARC [406]
  • RELION [282]
  • FREALIGN [41]
  • CTFFIND [40]
  • WARP [35]
  • GCTF [27]
  • CRYODRGN [23]
  • SPIDER [18]
  • CISTEM [17]
  • COOT [9]
  • UCSF CHIMERA [8]
  • PHENIX [7]
  • CCP4 PACKAGE [4]
  • EMAN1 [4]
  • DIREX [3]
  • IMOD [3]
  • XMIPP3, EMAN2 [3]
  • XMIPP3.1, RELION1.3 [3]
  • CHIMERA [2]
  • CTFFIND4 [2]
  • E2HELIXBOXER [2]
  • EMAN2, SPARX [2]
  • FLEX-EM [2]
  • IMAGIC [2]
  • MDFF [2]
  • SITUS [2]
  • SPARX [2]
  • CHIMERA, IMODFIT [1]
  • CTFFIND3, EMAN, BOXER, IMAGIC, FPM, RELION [1]
  • CTFFIND3, EMAN, BOXER, IMAGIC, FPM, SPIDER [1]
  • EMAN2 [1]
  • FREALIGN, EMAN2 [1]
  • IMAGIC-5 SPIDER [1]
  • IMOD, PEET, CTFFIND3D, EMAN, BOXER , FPM, SPIDER [1]
  • ISOLDE [1]
  • REFMAC [1]
  • RELION, CTFFIND3 [1]
  • RELION2.1 [1]
  • SPDER [1]
  • SPIDER, RELION [1]

Microscope

  • FEI TITAN KRIOS [677]
  • TFS KRIOS [297]
  • FEI TALOS ARCTICA [68]
  • FEI POLARA 300 [36]
  • TFS GLACIOS [36]
  • FEI TECNAI ARCTICA [11]
  • FEI TITAN [11]
  • FEI TECNAI F20 [10]
  • JEOL CRYO ARM 300 [10]
  • JEOL CRYO ARM 200 [5]
  • FEI TECNAI 20 [4]
  • FEI/PHILIPS CM300FEG/HE [4]
  • FEI TECNAI F30 [3]
  • JEOL 3200FSC [3]
  • TFS TALOS [3]
  • TFS TALOS L120C [3]
  • JEOL 1400 [2]
  • JEOL 2200FSC [2]
  • JEOL 3000SFF [2]
  • OTHER [2]
  • FEI/PHILIPS CM300FEG/T [1]
  • HITACHI H-9500SD [1]
  • JEOL 2100 [1]

Electron Source

  • FIELD EMISSION GUN [1182]
  • LAB6 [7]
  • TUNGSTEN HAIRPIN [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [361]
  • GATAN K3 BIOQUANTUM 6K X 4K [244]
  • GATAN K3 6K X 4K [239]
  • FEI FALCON III 4K X 4K [98]
  • GATAN K2 QUANTUM 4K X 4K [69]
  • FEI FALCON IV 4K X 4K [65]
  • FEI FALCON II 4K X 4K [38]
  • TFS FALCON 4I 4K X 4K [16]
  • GATAN K2 BASE 4K X 4K [12]
  • FEI EAGLE 4K X 4K [11]
  • GATAN ULTRASCAN 4000 4K X 4K [10]
  • GATAN K3 BIOCONTINUUM 6K X 4K [7]
  • KODAK SO-163 FILM [6]
  • DIRECT ELECTRON DE-20 5K X 3K [3]
  • FEI CETA 4K X 4K [3]
  • TVIPS TEMCAM-F416 4K X 4K [3]
  • GATAN K2 4K X 4K [2]
  • GENERIC GATAN [2]
  • FEI FALCON I 4K X 4K [1]
  • OTHER [1]
  • TVIPS TEMCAM-F224 2K X 2K [1]

External links

  • PDB [1186]
  • UniProt [890]
  • AlphaFold DB [881]
  • PDBe-Kb [860]
  • Pfam [784]
  • Gene Ontology [762]
  • InterPro [758]
  • ChEBI [531]
  • Complex Portal [523]
  • DrugBank [494]
  • ChEMBL [463]
  • EMPIAR [125]
  • CATH [24]
  • SCOP2 [8]