Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
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Current Database
- EMDB [2981]
Current status
- REL [2981]
Sample type
- Complex [2671]
- Protein [2115]
- Ligand [1170]
- RNA [760]
- DNA [415]
- Sample [400]
- Cellular component [78]
- Cell [75]
- Other [11]
- Virus [11]
Organism
- Escherichia coli [2981]
- Escherichia coli [226]
- Synthetic construct [219]
- Homo sapiens [126]
- Mus musculus [52]
- Saccharomyces cerevisiae [29]
- Bos taurus [24]
- Escherichia virus t7 [22]
- Escherichia coli [22]
- Apis mellifera [19]
- Enterobacteria phage t4 [17]
- Oryctolagus cuniculus [14]
- Escherichia coli [13]
- Escherichia phage lambda [12]
- Thermus thermophilus [12]
- Escherichia coli [12]
- Rattus norvegicus [11]
- Mycobacterium tuberculosis [11]
- Mycobacterium tuberculosis [11]
- Lama glama [11]
- Thermus thermophilus [10]
- Aquifex aeolicus [10]
- Escherichia coli [10]
- Saccharolobus solfataricus [9]
- Escherichia phage lambda [8]
- Human metapneumovirus [8]
- Enterobacteria phage p4 [7]
- Human immunodeficiency virus 1 [7]
- Aquifex aeolicus [7]
- Enterobacteria phage t4 [6]
- Pyrococcus furiosus [6]
- Pseudomonas aeruginosa [6]
- Escherichia phage mu [6]
- Pyrococcus abyssi [6]
- Bacteriophage sp. [6]
- Dictyostelium discoideum [6]
- Saccharomyces cerevisiae [6]
- Xenopus laevis [6]
- Pseudomonas putida [5]
- Escherichia coli [5]
- Listeria innocua [5]
- Chaetomium thermophilum [5]
- Bacillus subtilis [5]
- Photorhabdus thracensis [5]
- Vicugna pacos [5]
- Escherichia phage ms2 [5]
- Arabidopsis thaliana [5]
- Desulfonema ishimotonii [5]
- Escherichia coli [5]
- Vibrio alginolyticus [5]
- Escherichia coli [5]
- Streptococcus pneumoniae [4]
- Enterococcus faecalis [4]
- Geobacter sulfurreducens [4]
- Mycolicibacterium smegmatis [4]
- Pseudomonas aeruginosa [4]
- Pyrococcus abyssi [4]
- Escherichia coli [4]
- Escherichia coli [4]
- Escherichia coli [4]
- Escherichia coli [4]
- Klebsiella pneumoniae [4]
- Vibrio cholerae [4]
- Gallus gallus [4]
- Salmonella enterica [4]
- Cricetulus griseus [3]
- Human mastadenovirus b [3]
- (no species) [3]
- Enterococcus faecium [3]
- Bacillus subtilis [3]
- Listeria monocytogenes [3]
- Cutibacterium acnes [3]
- Candidatus cloacimonetes bacterium adurb.bin088 [3]
- Streptomyces virginiae [3]
- Metagenome [3]
- Escherichia phage phiv-1 [3]
- Geobacillus thermodenitrificans [3]
- (no species) [3]
- Aequorea victoria [3]
- Photorhabdus heterorhabditis [3]
- Staphylococcus aureus [3]
- Escherichia coli [2]
- Phage 21 [2]
- Teetrevirus t3luria [2]
- Rhodospirillum rubrum [2]
- Enterococcus faecalis [2]
- Cricket paralysis virus [2]
- Escherichia coli [2]
- Escherichia coli [2]
- Streptococcus pyogenes [2]
- Geobacillus stearothermophilus [2]
- Escherichia coli [2]
- Escherichia coli [2]
- Escherichia coli [2]
- Ruminococcus sp. xpd3002 [2]
- Paenibacillus sp. tca20 [2]
- Escherichia virus su10 [2]
- Peltigera membranacea [2]
- Escherichia coli [2]
- Escherichia coli [2]
EM Method
- Single-particle [2779]
- Subtomogram averaging [106]
- Helical reconstruction [75]
- Tomography [15]
- Electron Crystallography [6]
Resolution
- < 2Å [31]
- ≥ 2Å and < 3Å [584]
- ≥ 3Å and < 4Å [1126]
- ≥ 4Å and < 5Å [336]
- ≥ 5Å and < 6Å [103]
- ≥ 6Å and < 8Å [245]
- ≥ 8Å and < 12Å [209]
- ≥ 12Å and < 16Å [110]
- ≥ 16Å and < 20Å [58]
- ≥ 20Å and < 30Å [104]
- ≥ 30Å [54]
Model molecular weight
- 0-50 kDa [15]
- 50-100 kDa [83]
- 100-250 kDa [458]
- 250-500 kDa [406]
- 500-1000 kDa [341]
- 1-2 MDa [172]
- 2-5 MDa [359]
- 5-10 MDa [1]
- > 10 MDa [2]
Release Date
- 2026 [5]
- 2025 [573]
- 2024 [516]
- 2023 [366]
- 2022 [311]
- 2021 [208]
- 2020 [259]
- 2019 [115]
- 2018 [57]
- 2017 [101]
- 2016 [84]
- 2015 [46]
- 2014 [47]
- 2013 [69]
- 2012 [50]
- 2011 [45]
- 2010 [16]
- 2009 [35]
- 2008 [8]
- 2007 [14]
- 2006 [24]
- 2005 [4]
- 2004 [13]
- 2003 [14]
- 2002 [1]
Author by name
- Williamson JR [147]
- Lyumkis D [114]
- Spahn CMT [102]
- Mielke T [93]
- Frank J [92]
- Wang C [82]
- Darst SA [80]
- Burger J [74]
- Sprink T [71]
- Sheng K [68]
- Ebright RH [63]
- Rodnina MV [63]
- Saibil HR [63]
- Carragher B [59]
- Potter CS [59]
- Korostelev AA [58]
- Molodtsov V [58]
- Chen J [56]
- Rabuck-gibbons JN [55]
- Kaelber JT [54]
- Zhang J [51]
- Naismith JH [49]
- Zhang Z [49]
- Ehrenberg M [48]
- Takacs M [48]
- Weixlbaumer A [48]
- Nikolay R [47]
- Chen Y [46]
- Lauer S [46]
- Lauer SM [46]
- Wilson DN [46]
- Diebolder CA [45]
- Beckmann R [44]
- Loveland AB [43]
- Schacherl M [43]
- Wahl MC [43]
- Dabrowski M [42]
- Davis JH [42]
- Fluegel T [42]
- Flugel T [42]
- Guillen Schlippe Yv [42]
- Li X [42]
- Said N [42]
- Schroeer B [42]
- Unbehaun A [42]
- Campbell EA [41]
- Gao N [41]
- Hilal T [41]
- Moeller A [41]
- Saint-andre C [41]
- Stansfeld PJ [41]
- Wu D [41]
- Firlar E [40]
- Lee J [40]
- Zhu C [40]
- Artsimovitch I [39]
- Ishmukhametov R [39]
- Robinson CV [39]
- Sobti M [39]
- Stewart AG [39]
- Zhang Y [39]
- Dong X [38]
- Gao Y [38]
- Li L [38]
- Lin J [38]
- Ranson NA [38]
- Gil-carton D [36]
- Boehringer D [35]
- Fischer N [35]
- Fraser JS [35]
- Waksman G [35]
- Berger C [34]
- Blaha G [34]
- Dumoux M [34]
- Grange M [34]
- Sauer RT [34]
- Wang Y [34]
- Watson H [34]
- Zeng F [34]
- Demo G [33]
- Lee DJ [33]
- Li Y [33]
- Shepherd M [33]
- Aiyer S [32]
- Gagnon MG [32]
- Liu J [32]
- Liu Y [32]
- Loll B [32]
- Wang B [32]
- Chait BT [31]
- Fucini P [31]
- Gebert L [31]
- Cate JHD [30]
- Clare DK [30]
- Gasse J [30]
- Hoffmann R [30]
- Krizsan A [30]
- Lamour V [30]
- Mueller AU [30]
- Reepmeyer M [30]
Author by ORCID
- Williamson JR [111]
- Lyumkis D [90]
- Spahn CMT [88]
- Mielke T [67]
- Darst SA [65]
- Ebright RH [56]
- Korostelev AA [56]
- Kaelber JT [54]
- Rodnina MV [52]
- Molodtsov V [51]
- Weixlbaumer A [48]
- Nikolay R [47]
- Lauer SM [46]
- Wilson DN [46]
- Diebolder CA [45]
- Wahl MC [43]
- Schacherl M [43]
- Rabuck-gibbons JN [42]
- Guillen Schlippe Yv [42]
- Dabrowski M [42]
- Flugel T [42]
- Hilal T [41]
- Wang C [40]
- Stewart AG [39]
- Gao N [39]
- Robinson CV [38]
- Said N [38]
- Ranson NA [36]
- Artsimovitch I [36]
- Davis JH [36]
- Fischer N [35]
- Fraser JS [35]
- Berger C [34]
- Watson H [34]
- Dumoux M [34]
- Grange M [34]
- Lin J [33]
- Campbell EA [33]
- Demo G [33]
- Burger J [32]
- Loll B [31]
- Fucini P [31]
- Lamour V [30]
- Hoffmann R [30]
- Zeng YC [30]
- Su M [30]
- Mueller AU [30]
- Gasse J [30]
- Reepmeyer M [30]
- Hummer G [29]
- Welsch S [29]
- Finke F [28]
- Tan YZ [28]
- Valle M [28]
- Stansfeld PJ [28]
- Safarian S [28]
- Sauer RT [28]
- Lee DJ [28]
- Pellegrino J [28]
- Shepherd M [28]
- Seiple IB [28]
- Gagnon MG [28]
- Vidmar V [27]
- Boehringer D [27]
- Wang B [27]
- Bock LV [26]
- Baker D [25]
- Firlar E [25]
- Gil-carton D [25]
- Cate JHD [24]
- Blaha G [24]
- Connell SR [24]
- Loveland AB [24]
- Carragher B [24]
- Chen J [24]
- Qu YN [23]
- Gebert LFR [23]
- Macrae IJ [23]
- Glockshuber R [23]
- Cao LX [23]
- Fu Z [22]
- Clare DK [22]
- Walz T [22]
- Schedlbauer A [21]
- Sun M [21]
- Ramakrishnan V [21]
- Saint-andre C [21]
- Bachmann P [21]
- Molina N [21]
- Schnelle K [20]
- Yokoyama T [20]
- Watson ZL [20]
- Bottcher B [20]
- Mace K [20]
- Konevega AL [20]
- Waksman G [20]
- Schepartz A [20]
- Espeli O [20]
- Borde C [20]
- Bruno L [20]
Journal
- NAT COMMUN [606]
- TO BE PUBLISHED [303]
- NATURE [232]
- STRUCTURE [188]
- NAT STRUCT MOL BIOL [184]
- PNAS [162]
- NUCLEIC ACIDS RES [130]
- CELL [128]
- SCIENCE [128]
- ELIFE [125]
- MOL CELL [111]
- BIORXIV [92]
- EMBO J [57]
- J BIOL CHEM [55]
- SCI ADV [51]
- COMMUN BIOL [36]
- NAT CHEM BIOL [36]
- NAT METHODS [31]
- J STRUCT BIOL [24]
- SCI REP [24]
- MBIO [22]
- NAT MICROBIOL [22]
- J MOL BIOL [20]
- RNA [20]
- CELL REP [19]
- CELL RES [14]
- BIOMOLECULES [11]
- MOL MICROBIOL [11]
- ACTA CRYSTALLOGR D STRUCT BIOL [10]
- BIOCHEMISTRY [10]
- IUCRJ [10]
- PLOS BIOL [10]
- PROTEIN CELL [10]
- J BACTERIOL [8]
- ACS CENT SCI [7]
- CELL HOST MICROBE [7]
- CHEM [7]
- PLOS ONE [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- J AM CHEM SOC [6]
- NAT CHEM [6]
- PROTEIN SCI [6]
- CELL DISCOV [5]
- CURR RES STRUCT BIOL [5]
- FRONT MOL BIOSCI [5]
- ULTRAMICROSCOPY [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- ANGEW CHEM INT ED ENGL [4]
- GENES DEV [4]
- J VIROL [4]
- MOL CELLS [4]
- NAT BIOTECHNOL [4]
- SIGNAL TRANSDUCT TARGET THER [4]
- BIOCHEM BIOPHYS RES COMMUN [3]
- DRUG DISCOV TODAY [3]
- EMBO REP [3]
- INT J BIOL MACROMOL [3]
- ISCIENCE [3]
- J STRUCT BIOL X [3]
- MOL.CELL PROTEOMICS [3]
- PLOS PATHOG [3]
- PNAS NEXUS [3]
- RES COMPUT MOL BIOL [3]
- BIOCHIM BIOPHYS ACTA [2]
- CELL CHEM BIOL [2]
- FEBS J [2]
- FRONT MICROBIOL [2]
- INT J MOL SCI [2]
- J CELL BIOL [2]
- J.BIOCHEM. [2]
- METHODS [2]
- NEURON [2]
- PLANT COMMUN. [2]
- PROTEINS [2]
- VIRUSES [2]
- ACTA CRYSTALLOGR D. [1]
- ADV SCI [1]
- ANAL CHEM [1]
- BIOCHIM BIOPHYS ACTA BIOENERG [1]
- BIOPHYS J [1]
- BLOOD [1]
- EPIGENOMES [1]
- J HAZARD MATER [1]
- MLIFE [1]
- MSPHERE [1]
- NANOMATERIALS (BASEL) [1]
- NAT MATER [1]
- PATHOGENS [1]
- PLOS GENET [1]
Software
- CRYOSPARC [796]
- RELION [715]
- CTFFIND [167]
- SPIDER [130]
- FREALIGN [96]
- GCTF [63]
- CHIMERA [53]
- WARP [52]
- CISTEM [46]
- CRYOLO [40]
- COOT [38]
- XMIPP [34]
- EMAN [30]
- MDFF [27]
- CTFFIND3 [21]
- IMOD [21]
- APPION [18]
- CTFTILT [18]
- IMAGIC [18]
- IMAGIC, CUSTOM, SPIDER [16]
- PHENIX [16]
- APPION, SPIDER, EMAN [15]
- UCSF CHIMERA [13]
- IMOD, TOMO3D [12]
- APPION, SPIDER, SPARX, EMAN2 [10]
- EMAN2 [9]
- O [9]
- XMIPP, SPIDER [9]
- IMAGIC, SPIDER [8]
- SITUS [8]
- SPIDER, PACKAGE [8]
- SPIDER, RELION [8]
- URO [8]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [7]
- IMAGIC-5, SPIDER [7]
- PEET [7]
- SPIDER, IMAGIC [7]
- UCSF CHIMERAX [7]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- DYNAMO [5]
- GAP [5]
- SPARX [5]
- SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
- SPIDER, SPARX [5]
- CHIMERA, CNS [4]
- CHIMERA, EMFIT, COOT [4]
- CHIMERA, FLEX-EM [4]
- CTFFIND4 [4]
- EMAN, IMAGIC [4]
- EMCLARITY [4]
- IHRSR [4]
- SPIDER/WEB [4]
- ARACHNID, RELION, SPIDER [3]
- CHIMERA, COOT [3]
- CNS [3]
- CTFFIND3, LABEL AND SPIDER [3]
- CTFPHASEFLIP [3]
- EMAN, XMIPP [3]
- HSEARCH_LORENTZ [3]
- IMAGIC V [3]
- MODELLER, CHIMERA, FLEX-EM [3]
- MRC [3]
- PROTOMO [3]
- REFMAC [3]
- RELION, CTFFIND3, EMAN2 [3]
- SIMPLE [3]
- SPIDER AND IMAGIC [3]
- SPIDER PACKAGE [3]
- SPIDER XMIPP [3]
- SPIDER, IHRSR [3]
- XMIPP, EMAN2, SPARX [3]
- CHIMERA, MDFF [2]
- CTFFIND, EMAN2, SPRING [2]
- CTFFIND4, SIMPLE, EMAN2, RELION [2]
- DOCKEM [2]
- E2HELIXBOXER [2]
- EMAN, SPIDER [2]
- EMAN,AUTO3DEM [2]
- EMAN2 SPARX [2]
- EMAN2, CTFFIND4, SPIDER, SPARX [2]
- EMAN2, RELION [2]
- EMAN2, SPARX [2]
- FLEX-EM [2]
- IMAGIC-5 [2]
- IMAGIC-5 SPIDER [2]
- IMOD, RAPTOR, PROTOMO [2]
- ISOLDE [2]
- MANUAL [2]
- MATLAB [2]
- PFT3DR, BSOFT [2]
- PYMOL, MDFF [2]
- RELION, CTFFIND3 [2]
- RSREF [2]
- SITUS, LOCALFIT [2]
- STOPGAP [2]
- SUBTOM [2]
- TNT [2]
- TOM TOOLBOX [2]
- TOMO3D [2]
- AMIRA 3.1, TGS SOFTWARE [1]
Microscope
- FEI TITAN KRIOS [1542]
- TFS KRIOS [509]
- FEI TALOS ARCTICA [199]
- FEI TECNAI F20 [182]
- FEI POLARA 300 [144]
- TFS GLACIOS [84]
- JEOL CRYO ARM 300 [55]
- FEI TECNAI F30 [44]
- FEI/PHILIPS CM200FEG [30]
- FEI TECNAI 12 [19]
- TFS TALOS [18]
- FEI TECNAI ARCTICA [16]
- JEOL 2010F [16]
- FEI TITAN [13]
- FEI TECNAI 20 [11]
- JEOL 3200FSC [11]
- JEOL 1200EXII [8]
- JEOL 2200FS [7]
- FEI TECNAI SPIRIT [5]
- FEI/PHILIPS CM200FEG/UT [5]
- JEOL 3000SFF [5]
- FEI/PHILIPS CM200FEG/ST [4]
- JEOL 1200EX [4]
- JEOL 1230 [4]
- JEOL 1400 [4]
- JEOL 1400/HR YPS FEG [4]
- JEOL 2100F [4]
- JEOL 3100FFC [4]
- FEI/PHILIPS EM420 [3]
- JEOL 3200FS [3]
- JEOL CRYO ARM 200 [3]
- OTHER [3]
- TFS TALOS L120C [3]
- FEI MORGAGNI [2]
- FEI/PHILIPS CM120T [2]
- FEI/PHILIPS CM300FEG/HE [2]
- JEOL 2200FSC [2]
- TFS TUNDRA [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS CM300FEG/T [1]
- JEOL 2010HC [1]
- JEOL 2010HT [1]
- JEOL 4000EX [1]
Electron Source
- FIELD EMISSION GUN [2915]
- LAB6 [31]
- TUNGSTEN HAIRPIN [21]
- OTHER [14]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [807]
- GATAN K3 6K X 4K [571]
- GATAN K3 BIOQUANTUM 6K X 4K [527]
- FEI FALCON III 4K X 4K [206]
- FEI FALCON IV 4K X 4K [154]
- KODAK SO-163 FILM [143]
- FEI FALCON II 4K X 4K [101]
- TFS FALCON 4I 4K X 4K [76]
- GATAN ULTRASCAN 4000 4K X 4K [66]
- GATAN K2 QUANTUM 4K X 4K [61]
- GENERIC TVIPS 4K X 4K [26]
- TVIPS TEMCAM-F415 4K X 4K [26]
- TVIPS TEMCAM-F416 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [20]
- FEI EAGLE 4K X 4K [19]
- OTHER [17]
- GENERIC GATAN 4K X 4K [16]
- FEI FALCON I 4K X 4K [10]
- GATAN K2 4K X 4K [10]
- FEI CETA 4K X 4K [8]
- GATAN K2 BASE 4K X 4K [8]
- DIRECT ELECTRON DE-12 4K X 3K [6]
- GENERIC GATAN [6]
- DIRECT ELECTRON DE-20 5K X 3K [5]
- GATAN ULTRASCAN 1000 2K X 2K [5]
- GENERIC CCD [5]
- DECTRIS SINGLA 1K X 1K [4]
- AGFA SCIENTA FILM [3]
- GENERIC FILM [3]
- DIRECT ELECTRON DE-16 4K X 4K [2]
- DIRECT ELECTRON DE-64 8K X 8K [2]
- GATAN K2 IS 4K X 4K [2]
- KODAK 4489 FILM [2]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- TVIPS TEMCAM-F816 8K X 8K [1]
External links
- PDB [1847]
- UniProt [1829]
- AlphaFold DB [1706]
- PDBe-Kb [1520]
- Pfam [1280]
- Gene Ontology [1232]
- InterPro [1145]
- ChEBI [1065]
- DrugBank [1015]
- ChEMBL [931]
- Complex Portal [523]
- EMPIAR [348]
- CATH [28]
- SCOP2 [26]
Release date: Jan. 7, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9vhl
Q-score: 0.485
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9vhl
Q-score: 0.485
Dai Z, Liu C, Wang Y, Chen X, Fu X, Yang K, Zhu R, Jia X, Chen Y, Tao P, Guan Z, Zou T
Nucleic Acids Res (2025) 53 [ Pubmed: 41277685 DOI: doi:10.1093/nar/gkaf1173 ]
Release date: Jan. 7, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9o95
Q-score: 0.576
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9o95
Q-score: 0.576
Chien C-T, Chiu W, Maduke M
To Be Published
Release date: Jan. 7, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9o96
Q-score: 0.549
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9o96
Q-score: 0.549
Chien C-T, Chiu W, Maduke M
To Be Published
Release date: Jan. 7, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9o97
Q-score: 0.553
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9o97
Q-score: 0.553
Chien C-T, Chiu W, Maduke M
To Be Published
Release date: Jan. 7, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9o98
Q-score: 0.546
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9o98
Q-score: 0.546
Chien C-T, Chiu W, Maduke M
To Be Published
Release date: Dec. 31, 2025
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9vhe
Q-score: 0.495
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9vhe
Q-score: 0.495
Dai Z, Liu C, Wang Y, Chen X, Fu X, Yang K, Zhu R, Jia X, Chen Y, Tao P, Guan Z, Zou T
Nucleic Acids Res (2025) 53 [ Pubmed: 41277685 DOI: doi:10.1093/nar/gkaf1173 ]
Release date: Dec. 24, 2025
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 9hnq
Q-score: 0.459
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 9hnq
Q-score: 0.459
Cowgill J, Fan C, Howard RJ, Lindahl E
To Be Published
Release date: Dec. 24, 2025
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9hnr
Q-score: 0.493
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9hnr
Q-score: 0.493
Cowgill J, Fan C, Howard RJ, Lindahl E
To Be Published
Release date: Dec. 24, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9hns
Q-score: 0.517
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9hns
Q-score: 0.517
Cowgill J, Fan C, Howard RJ, Lindahl E
To Be Published
Release date: Dec. 24, 2025
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9hnt
Q-score: 0.461
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9hnt
Q-score: 0.461
Cowgill J, Fan C, Howard RJ, Lindahl E
To Be Published
Filter By
Current Database
- EMDB [2981]
Current status
- REL [2981]
Sample type
- Complex [2671]
- Protein [2115]
- Ligand [1170]
- RNA [760]
- DNA [415]
- Sample [400]
- Cellular component [78]
- Cell [75]
- Other [11]
- Virus [11]
Organism
- Escherichia coli [2981]
- Escherichia coli [226]
- Synthetic construct [219]
- Homo sapiens [126]
- Mus musculus [52]
- Saccharomyces cerevisiae [29]
- Bos taurus [24]
- Escherichia virus t7 [22]
- Escherichia coli [22]
- Apis mellifera [19]
- Enterobacteria phage t4 [17]
- Oryctolagus cuniculus [14]
- Escherichia coli [13]
- Escherichia phage lambda [12]
- Thermus thermophilus [12]
- Escherichia coli [12]
- Rattus norvegicus [11]
- Mycobacterium tuberculosis [11]
- Mycobacterium tuberculosis [11]
- Lama glama [11]
- Thermus thermophilus [10]
- Aquifex aeolicus [10]
- Escherichia coli [10]
- Saccharolobus solfataricus [9]
- Escherichia phage lambda [8]
- Human metapneumovirus [8]
- Enterobacteria phage p4 [7]
- Human immunodeficiency virus 1 [7]
- Aquifex aeolicus [7]
- Enterobacteria phage t4 [6]
- Pyrococcus furiosus [6]
- Pseudomonas aeruginosa [6]
- Escherichia phage mu [6]
- Pyrococcus abyssi [6]
- Bacteriophage sp. [6]
- Dictyostelium discoideum [6]
- Saccharomyces cerevisiae [6]
- Xenopus laevis [6]
- Pseudomonas putida [5]
- Escherichia coli [5]
- Listeria innocua [5]
- Chaetomium thermophilum [5]
- Bacillus subtilis [5]
- Photorhabdus thracensis [5]
- Vicugna pacos [5]
- Escherichia phage ms2 [5]
- Arabidopsis thaliana [5]
- Desulfonema ishimotonii [5]
- Escherichia coli [5]
- Vibrio alginolyticus [5]
- Escherichia coli [5]
- Streptococcus pneumoniae [4]
- Enterococcus faecalis [4]
- Geobacter sulfurreducens [4]
- Mycolicibacterium smegmatis [4]
- Pseudomonas aeruginosa [4]
- Pyrococcus abyssi [4]
- Escherichia coli [4]
- Escherichia coli [4]
- Escherichia coli [4]
- Escherichia coli [4]
- Klebsiella pneumoniae [4]
- Vibrio cholerae [4]
- Gallus gallus [4]
- Salmonella enterica [4]
- Cricetulus griseus [3]
- Human mastadenovirus b [3]
- (no species) [3]
- Enterococcus faecium [3]
- Bacillus subtilis [3]
- Listeria monocytogenes [3]
- Cutibacterium acnes [3]
- Candidatus cloacimonetes bacterium adurb.bin088 [3]
- Streptomyces virginiae [3]
- Metagenome [3]
- Escherichia phage phiv-1 [3]
- Geobacillus thermodenitrificans [3]
- (no species) [3]
- Aequorea victoria [3]
- Photorhabdus heterorhabditis [3]
- Staphylococcus aureus [3]
- Escherichia coli [2]
- Phage 21 [2]
- Teetrevirus t3luria [2]
- Rhodospirillum rubrum [2]
- Enterococcus faecalis [2]
- Cricket paralysis virus [2]
- Escherichia coli [2]
- Escherichia coli [2]
- Streptococcus pyogenes [2]
- Geobacillus stearothermophilus [2]
- Escherichia coli [2]
- Escherichia coli [2]
- Escherichia coli [2]
- Ruminococcus sp. xpd3002 [2]
- Paenibacillus sp. tca20 [2]
- Escherichia virus su10 [2]
- Peltigera membranacea [2]
- Escherichia coli [2]
- Escherichia coli [2]
EM Method
- Single-particle [2779]
- Subtomogram averaging [106]
- Helical reconstruction [75]
- Tomography [15]
- Electron Crystallography [6]
Resolution
- < 2Å [31]
- ≥ 2Å and < 3Å [584]
- ≥ 3Å and < 4Å [1126]
- ≥ 4Å and < 5Å [336]
- ≥ 5Å and < 6Å [103]
- ≥ 6Å and < 8Å [245]
- ≥ 8Å and < 12Å [209]
- ≥ 12Å and < 16Å [110]
- ≥ 16Å and < 20Å [58]
- ≥ 20Å and < 30Å [104]
- ≥ 30Å [54]
Model molecular weight
- 0-50 kDa [15]
- 50-100 kDa [83]
- 100-250 kDa [458]
- 250-500 kDa [406]
- 500-1000 kDa [341]
- 1-2 MDa [172]
- 2-5 MDa [359]
- 5-10 MDa [1]
- > 10 MDa [2]
Release Date
- 2026 [5]
- 2025 [573]
- 2024 [516]
- 2023 [366]
- 2022 [311]
- 2021 [208]
- 2020 [259]
- 2019 [115]
- 2018 [57]
- 2017 [101]
- 2016 [84]
- 2015 [46]
- 2014 [47]
- 2013 [69]
- 2012 [50]
- 2011 [45]
- 2010 [16]
- 2009 [35]
- 2008 [8]
- 2007 [14]
- 2006 [24]
- 2005 [4]
- 2004 [13]
- 2003 [14]
- 2002 [1]
Author by name
- Williamson JR [147]
- Lyumkis D [114]
- Spahn CMT [102]
- Mielke T [93]
- Frank J [92]
- Wang C [82]
- Darst SA [80]
- Burger J [74]
- Sprink T [71]
- Sheng K [68]
- Ebright RH [63]
- Rodnina MV [63]
- Saibil HR [63]
- Carragher B [59]
- Potter CS [59]
- Korostelev AA [58]
- Molodtsov V [58]
- Chen J [56]
- Rabuck-gibbons JN [55]
- Kaelber JT [54]
- Zhang J [51]
- Naismith JH [49]
- Zhang Z [49]
- Ehrenberg M [48]
- Takacs M [48]
- Weixlbaumer A [48]
- Nikolay R [47]
- Chen Y [46]
- Lauer S [46]
- Lauer SM [46]
- Wilson DN [46]
- Diebolder CA [45]
- Beckmann R [44]
- Loveland AB [43]
- Schacherl M [43]
- Wahl MC [43]
- Dabrowski M [42]
- Davis JH [42]
- Fluegel T [42]
- Flugel T [42]
- Guillen Schlippe Yv [42]
- Li X [42]
- Said N [42]
- Schroeer B [42]
- Unbehaun A [42]
- Campbell EA [41]
- Gao N [41]
- Hilal T [41]
- Moeller A [41]
- Saint-andre C [41]
- Stansfeld PJ [41]
- Wu D [41]
- Firlar E [40]
- Lee J [40]
- Zhu C [40]
- Artsimovitch I [39]
- Ishmukhametov R [39]
- Robinson CV [39]
- Sobti M [39]
- Stewart AG [39]
- Zhang Y [39]
- Dong X [38]
- Gao Y [38]
- Li L [38]
- Lin J [38]
- Ranson NA [38]
- Gil-carton D [36]
- Boehringer D [35]
- Fischer N [35]
- Fraser JS [35]
- Waksman G [35]
- Berger C [34]
- Blaha G [34]
- Dumoux M [34]
- Grange M [34]
- Sauer RT [34]
- Wang Y [34]
- Watson H [34]
- Zeng F [34]
- Demo G [33]
- Lee DJ [33]
- Li Y [33]
- Shepherd M [33]
- Aiyer S [32]
- Gagnon MG [32]
- Liu J [32]
- Liu Y [32]
- Loll B [32]
- Wang B [32]
- Chait BT [31]
- Fucini P [31]
- Gebert L [31]
- Cate JHD [30]
- Clare DK [30]
- Gasse J [30]
- Hoffmann R [30]
- Krizsan A [30]
- Lamour V [30]
- Mueller AU [30]
- Reepmeyer M [30]
Author by ORCID
- Williamson JR [111]
- Lyumkis D [90]
- Spahn CMT [88]
- Mielke T [67]
- Darst SA [65]
- Ebright RH [56]
- Korostelev AA [56]
- Kaelber JT [54]
- Rodnina MV [52]
- Molodtsov V [51]
- Weixlbaumer A [48]
- Nikolay R [47]
- Lauer SM [46]
- Wilson DN [46]
- Diebolder CA [45]
- Wahl MC [43]
- Schacherl M [43]
- Rabuck-gibbons JN [42]
- Guillen Schlippe Yv [42]
- Dabrowski M [42]
- Flugel T [42]
- Hilal T [41]
- Wang C [40]
- Stewart AG [39]
- Gao N [39]
- Robinson CV [38]
- Said N [38]
- Ranson NA [36]
- Artsimovitch I [36]
- Davis JH [36]
- Fischer N [35]
- Fraser JS [35]
- Berger C [34]
- Watson H [34]
- Dumoux M [34]
- Grange M [34]
- Lin J [33]
- Campbell EA [33]
- Demo G [33]
- Burger J [32]
- Loll B [31]
- Fucini P [31]
- Lamour V [30]
- Hoffmann R [30]
- Zeng YC [30]
- Su M [30]
- Mueller AU [30]
- Gasse J [30]
- Reepmeyer M [30]
- Hummer G [29]
- Welsch S [29]
- Finke F [28]
- Tan YZ [28]
- Valle M [28]
- Stansfeld PJ [28]
- Safarian S [28]
- Sauer RT [28]
- Lee DJ [28]
- Pellegrino J [28]
- Shepherd M [28]
- Seiple IB [28]
- Gagnon MG [28]
- Vidmar V [27]
- Boehringer D [27]
- Wang B [27]
- Bock LV [26]
- Baker D [25]
- Firlar E [25]
- Gil-carton D [25]
- Cate JHD [24]
- Blaha G [24]
- Connell SR [24]
- Loveland AB [24]
- Carragher B [24]
- Chen J [24]
- Qu YN [23]
- Gebert LFR [23]
- Macrae IJ [23]
- Glockshuber R [23]
- Cao LX [23]
- Fu Z [22]
- Clare DK [22]
- Walz T [22]
- Schedlbauer A [21]
- Sun M [21]
- Ramakrishnan V [21]
- Saint-andre C [21]
- Bachmann P [21]
- Molina N [21]
- Schnelle K [20]
- Yokoyama T [20]
- Watson ZL [20]
- Bottcher B [20]
- Mace K [20]
- Konevega AL [20]
- Waksman G [20]
- Schepartz A [20]
- Espeli O [20]
- Borde C [20]
- Bruno L [20]
Journal
- NAT COMMUN [606]
- TO BE PUBLISHED [303]
- NATURE [232]
- STRUCTURE [188]
- NAT STRUCT MOL BIOL [184]
- PNAS [162]
- NUCLEIC ACIDS RES [130]
- CELL [128]
- SCIENCE [128]
- ELIFE [125]
- MOL CELL [111]
- BIORXIV [92]
- EMBO J [57]
- J BIOL CHEM [55]
- SCI ADV [51]
- COMMUN BIOL [36]
- NAT CHEM BIOL [36]
- NAT METHODS [31]
- J STRUCT BIOL [24]
- SCI REP [24]
- MBIO [22]
- NAT MICROBIOL [22]
- J MOL BIOL [20]
- RNA [20]
- CELL REP [19]
- CELL RES [14]
- BIOMOLECULES [11]
- MOL MICROBIOL [11]
- ACTA CRYSTALLOGR D STRUCT BIOL [10]
- BIOCHEMISTRY [10]
- IUCRJ [10]
- PLOS BIOL [10]
- PROTEIN CELL [10]
- J BACTERIOL [8]
- ACS CENT SCI [7]
- CELL HOST MICROBE [7]
- CHEM [7]
- PLOS ONE [7]
- PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES USA [7]
- J AM CHEM SOC [6]
- NAT CHEM [6]
- PROTEIN SCI [6]
- CELL DISCOV [5]
- CURR RES STRUCT BIOL [5]
- FRONT MOL BIOSCI [5]
- ULTRAMICROSCOPY [5]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [4]
- ANGEW CHEM INT ED ENGL [4]
- GENES DEV [4]
- J VIROL [4]
- MOL CELLS [4]
- NAT BIOTECHNOL [4]
- SIGNAL TRANSDUCT TARGET THER [4]
- BIOCHEM BIOPHYS RES COMMUN [3]
- DRUG DISCOV TODAY [3]
- EMBO REP [3]
- INT J BIOL MACROMOL [3]
- ISCIENCE [3]
- J STRUCT BIOL X [3]
- MOL.CELL PROTEOMICS [3]
- PLOS PATHOG [3]
- PNAS NEXUS [3]
- RES COMPUT MOL BIOL [3]
- BIOCHIM BIOPHYS ACTA [2]
- CELL CHEM BIOL [2]
- FEBS J [2]
- FRONT MICROBIOL [2]
- INT J MOL SCI [2]
- J CELL BIOL [2]
- J.BIOCHEM. [2]
- METHODS [2]
- NEURON [2]
- PLANT COMMUN. [2]
- PROTEINS [2]
- VIRUSES [2]
- ACTA CRYSTALLOGR D. [1]
- ADV SCI [1]
- ANAL CHEM [1]
- BIOCHIM BIOPHYS ACTA BIOENERG [1]
- BIOPHYS J [1]
- BLOOD [1]
- EPIGENOMES [1]
- J HAZARD MATER [1]
- MLIFE [1]
- MSPHERE [1]
- NANOMATERIALS (BASEL) [1]
- NAT MATER [1]
- PATHOGENS [1]
- PLOS GENET [1]
Software
- CRYOSPARC [796]
- RELION [715]
- CTFFIND [167]
- SPIDER [130]
- FREALIGN [96]
- GCTF [63]
- CHIMERA [53]
- WARP [52]
- CISTEM [46]
- CRYOLO [40]
- COOT [38]
- XMIPP [34]
- EMAN [30]
- MDFF [27]
- CTFFIND3 [21]
- IMOD [21]
- APPION [18]
- CTFTILT [18]
- IMAGIC [18]
- IMAGIC, CUSTOM, SPIDER [16]
- PHENIX [16]
- APPION, SPIDER, EMAN [15]
- UCSF CHIMERA [13]
- IMOD, TOMO3D [12]
- APPION, SPIDER, SPARX, EMAN2 [10]
- EMAN2 [9]
- O [9]
- XMIPP, SPIDER [9]
- IMAGIC, SPIDER [8]
- SITUS [8]
- SPIDER, PACKAGE [8]
- SPIDER, RELION [8]
- URO [8]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [7]
- IMAGIC-5, SPIDER [7]
- PEET [7]
- SPIDER, IMAGIC [7]
- UCSF CHIMERAX [7]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- DYNAMO [5]
- GAP [5]
- SPARX [5]
- SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
- SPIDER, SPARX [5]
- CHIMERA, CNS [4]
- CHIMERA, EMFIT, COOT [4]
- CHIMERA, FLEX-EM [4]
- CTFFIND4 [4]
- EMAN, IMAGIC [4]
- EMCLARITY [4]
- IHRSR [4]
- SPIDER/WEB [4]
- ARACHNID, RELION, SPIDER [3]
- CHIMERA, COOT [3]
- CNS [3]
- CTFFIND3, LABEL AND SPIDER [3]
- CTFPHASEFLIP [3]
- EMAN, XMIPP [3]
- HSEARCH_LORENTZ [3]
- IMAGIC V [3]
- MODELLER, CHIMERA, FLEX-EM [3]
- MRC [3]
- PROTOMO [3]
- REFMAC [3]
- RELION, CTFFIND3, EMAN2 [3]
- SIMPLE [3]
- SPIDER AND IMAGIC [3]
- SPIDER PACKAGE [3]
- SPIDER XMIPP [3]
- SPIDER, IHRSR [3]
- XMIPP, EMAN2, SPARX [3]
- CHIMERA, MDFF [2]
- CTFFIND, EMAN2, SPRING [2]
- CTFFIND4, SIMPLE, EMAN2, RELION [2]
- DOCKEM [2]
- E2HELIXBOXER [2]
- EMAN, SPIDER [2]
- EMAN,AUTO3DEM [2]
- EMAN2 SPARX [2]
- EMAN2, CTFFIND4, SPIDER, SPARX [2]
- EMAN2, RELION [2]
- EMAN2, SPARX [2]
- FLEX-EM [2]
- IMAGIC-5 [2]
- IMAGIC-5 SPIDER [2]
- IMOD, RAPTOR, PROTOMO [2]
- ISOLDE [2]
- MANUAL [2]
- MATLAB [2]
- PFT3DR, BSOFT [2]
- PYMOL, MDFF [2]
- RELION, CTFFIND3 [2]
- RSREF [2]
- SITUS, LOCALFIT [2]
- STOPGAP [2]
- SUBTOM [2]
- TNT [2]
- TOM TOOLBOX [2]
- TOMO3D [2]
- AMIRA 3.1, TGS SOFTWARE [1]
Microscope
- FEI TITAN KRIOS [1542]
- TFS KRIOS [509]
- FEI TALOS ARCTICA [199]
- FEI TECNAI F20 [182]
- FEI POLARA 300 [144]
- TFS GLACIOS [84]
- JEOL CRYO ARM 300 [55]
- FEI TECNAI F30 [44]
- FEI/PHILIPS CM200FEG [30]
- FEI TECNAI 12 [19]
- TFS TALOS [18]
- FEI TECNAI ARCTICA [16]
- JEOL 2010F [16]
- FEI TITAN [13]
- FEI TECNAI 20 [11]
- JEOL 3200FSC [11]
- JEOL 1200EXII [8]
- JEOL 2200FS [7]
- FEI TECNAI SPIRIT [5]
- FEI/PHILIPS CM200FEG/UT [5]
- JEOL 3000SFF [5]
- FEI/PHILIPS CM200FEG/ST [4]
- JEOL 1200EX [4]
- JEOL 1230 [4]
- JEOL 1400 [4]
- JEOL 1400/HR YPS FEG [4]
- JEOL 2100F [4]
- JEOL 3100FFC [4]
- FEI/PHILIPS EM420 [3]
- JEOL 3200FS [3]
- JEOL CRYO ARM 200 [3]
- OTHER [3]
- TFS TALOS L120C [3]
- FEI MORGAGNI [2]
- FEI/PHILIPS CM120T [2]
- FEI/PHILIPS CM300FEG/HE [2]
- JEOL 2200FSC [2]
- TFS TUNDRA [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS CM300FEG/T [1]
- JEOL 2010HC [1]
- JEOL 2010HT [1]
- JEOL 4000EX [1]
Electron Source
- FIELD EMISSION GUN [2915]
- LAB6 [31]
- TUNGSTEN HAIRPIN [21]
- OTHER [14]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [807]
- GATAN K3 6K X 4K [571]
- GATAN K3 BIOQUANTUM 6K X 4K [527]
- FEI FALCON III 4K X 4K [206]
- FEI FALCON IV 4K X 4K [154]
- KODAK SO-163 FILM [143]
- FEI FALCON II 4K X 4K [101]
- TFS FALCON 4I 4K X 4K [76]
- GATAN ULTRASCAN 4000 4K X 4K [66]
- GATAN K2 QUANTUM 4K X 4K [61]
- GENERIC TVIPS 4K X 4K [26]
- TVIPS TEMCAM-F415 4K X 4K [26]
- TVIPS TEMCAM-F416 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [20]
- FEI EAGLE 4K X 4K [19]
- OTHER [17]
- GENERIC GATAN 4K X 4K [16]
- FEI FALCON I 4K X 4K [10]
- GATAN K2 4K X 4K [10]
- FEI CETA 4K X 4K [8]
- GATAN K2 BASE 4K X 4K [8]
- DIRECT ELECTRON DE-12 4K X 3K [6]
- GENERIC GATAN [6]
- DIRECT ELECTRON DE-20 5K X 3K [5]
- GATAN ULTRASCAN 1000 2K X 2K [5]
- GENERIC CCD [5]
- DECTRIS SINGLA 1K X 1K [4]
- AGFA SCIENTA FILM [3]
- GENERIC FILM [3]
- DIRECT ELECTRON DE-16 4K X 4K [2]
- DIRECT ELECTRON DE-64 8K X 8K [2]
- GATAN K2 IS 4K X 4K [2]
- KODAK 4489 FILM [2]
- DIRECT ELECTRON APOLLO 4K X 4K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- TVIPS TEMCAM-F816 8K X 8K [1]
External links
- PDB [1847]
- UniProt [1829]
- AlphaFold DB [1706]
- PDBe-Kb [1520]
- Pfam [1280]
- Gene Ontology [1232]
- InterPro [1145]
- ChEBI [1065]
- DrugBank [1015]
- ChEMBL [931]
- Complex Portal [523]
- EMPIAR [348]
- CATH [28]
- SCOP2 [26]