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natural_source_ncbi_code:"4530"

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Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [18]
  • RNA [9]
  • Ligand [6]

Organism

  • Oryza sativa [20]
  • Oryza sativa [7]
  • Triticum aestivum [4]
  • Oryza sativa indica group x oryza nivara [1]
  • Synthetic construct [1]
  • Arabidopsis thaliana [1]

EM Method

  • Single-particle [20]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [7]
  • 250-500 kDa [3]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [3]

Release Date

  • 2026 [1]
  • 2025 [2]
  • 2024 [8]
  • 2023 [6]
  • 2021 [3]

Author by name

  • Blaha GM [4]
  • Cao X [4]
  • Fu P [4]
  • Fujiwara T [4]
  • Gao R [4]
  • Hao Q [4]
  • Ito T [4]
  • Iwasaki S [4]
  • Jia Y [4]
  • Li Y [4]
  • Lin J [4]
  • Lu G [4]
  • Nishimoto M [4]
  • Saito H [4]
  • Shigematsu H [4]
  • Shirouzu M [4]
  • Sotta N [4]
  • Tanaka M [4]
  • Tsuda K [4]
  • Wu Z [4]
  • Xu X [4]
  • Yang G [4]
  • Yang GH [4]
  • Yokoyama T [4]
  • Yu Z [4]
  • Zhou J [4]
  • Wang J [3]
  • Chen Y [2]
  • Chen YL [2]
  • Chiu W [2]
  • Degregorio SJ [2]
  • Pabit SA [2]
  • Pollack L [2]
  • Steitz JA [2]
  • Su Z [2]
  • Torabi S [2]
  • Torabi SF [2]
  • Vaidya AT [2]
  • Zhang K [2]
  • Alguel Y [1]
  • Arold ST [1]
  • Babbar R [1]
  • Barrit JD [1]
  • Barritt JD [1]
  • Byrne B [1]
  • Cameron AD [1]
  • Cecchetti C [1]
  • Chen YH [1]
  • Choong YK [1]
  • Degregorio S [1]
  • Dobson RCJ [1]
  • Gong X [1]
  • Grover A [1]
  • Guo Y [1]
  • Han X [1]
  • Hu Q [1]
  • Huang X [1]
  • Huntington B [1]
  • Jagdev MK [1]
  • Jia YT [1]
  • Jian S [1]
  • Jobichen C [1]
  • Jones AME [1]
  • Lehmann S [1]
  • Li J [1]
  • Li Q [1]
  • Li QY [1]
  • Liu H [1]
  • Liu S [1]
  • Liu SM [1]
  • Mohan TC [1]
  • Mohapatra C [1]
  • Nie JW [1]
  • Pabit S [1]
  • Qin L [1]
  • Saharan K [1]
  • Samal A [1]
  • Saouros S [1]
  • Savva CG [1]
  • Scull NJ [1]
  • Shahul Hameed Uf [1]
  • Simpson P [1]
  • Sivaraman J [1]
  • Song B [1]
  • Steinchen W [1]
  • Steitz J [1]
  • Su M [1]
  • Tang LH [1]
  • Vaidya A [1]
  • Vancea AI [1]
  • Vasudevan D [1]
  • Wang B [1]
  • Wang H [1]
  • Wang MH [1]
  • Wang Y [1]
  • Wang Y-W [1]
  • Xiao H [1]
  • Xie Q [1]
  • Xu HE [1]
  • Xu RM [1]

Author by ORCID

  • Sotta N [4]
  • Lin J [4]
  • Gao R [4]
  • Jia Y [4]
  • Blaha GM [4]
  • Iwasaki S [4]
  • Cao X [4]
  • Yokoyama T [4]
  • Tanaka M [4]
  • Fujiwara T [4]
  • Yang G [4]
  • Shirouzu M [4]
  • Xu X [4]
  • Nishimoto M [4]
  • Lu G [4]
  • Ito T [4]
  • Shigematsu H [4]
  • Fu P [4]
  • Zhou J [4]
  • Chen YL [2]
  • Pabit SA [2]
  • Wang J [2]
  • Chiu W [2]
  • Su Z [2]
  • Pollack L [2]
  • Zhang K [2]
  • Torabi SF [2]
  • Arold ST [1]
  • Huntington B [1]
  • Jobichen C [1]
  • Zheng J [1]
  • Chen YH [1]
  • Byrne B [1]
  • Li J [1]
  • Shahul Hameed Uf [1]
  • Song B [1]
  • Xu RM [1]
  • Guo Y [1]
  • Xie Q [1]
  • Tang LH [1]
  • Vancea AI [1]
  • Qin L [1]
  • Jones AME [1]
  • Nie JW [1]
  • Savva CG [1]
  • Zhang XY [1]

Journal

  • J INTEGR PLANT BIOL [4]
  • NAT CHEM BIOL [4]
  • NUCLEIC ACIDS RES [4]
  • PNAS [2]
  • INT J BIOL MACROMOL [1]
  • NAT COMMUN [1]
  • NAT PLANTS [1]
  • PLANT CELL PHYSIOL [1]
  • SCI REP [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [6]
  • CRYOSPARC [3]
  • CTFFIND [2]

Microscope

  • FEI TITAN KRIOS [10]
  • FEI TALOS ARCTICA [3]
  • FEI TECNAI ARCTICA [3]
  • JEOL CRYO ARM 300 [2]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K3 6K X 4K [10]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [20]
  • AlphaFold DB [16]
  • PDBe-Kb [16]
  • UniProt [16]
  • Gene Ontology [15]
  • InterPro [15]
  • Pfam [14]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
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EMD-62205
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3D View
Cryo-EM structure of the SPS3-FBN5 complex in a 2:2 state class 2
CryoEM
Release date: May 6, 2026
Resolution: 4.1 Å
EM Method: Single-particle

Xiao H, Wang Y-W, Zhu P, Yang G-F

To Be Published

EMD-62415
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Rice D3-ASK1 complex in presence of ShHTL7 with GR24
CryoEM
Release date: Sept. 17, 2025
Resolution: 4.3 Å
EM Method: Single-particle

Vancea AI, Huntington B, Steinchen W, Savva CG, Shahul Hameed UF, Arold ST

Nat Commun (2025) 16 pp. 10291-10291 [ DOI: doi:10.1038/s41467-025-65205-0 Pubmed: 41271672 ]

EMD-60751
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3D View
Cryo-EM structure of ClpB1 heptamer from Oryza sativa
CryoEM
Release date: May 14, 2025
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9ip0
Q-score: 0.393

Jobichen C, Saharan K, Samal A, Choong YK, Jagdev MK, Mohapatra C, Jian S, Babbar R, Dobson RCJ, Grover A, Vasudevan D, Sivaraman J

Int J Biol Macromol (2025) 311 pp. 143917-143917 [ DOI: doi:10.1016/j.ijbiomac.2025.143917 Pubmed: 40324502 ]

EMD-38988
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The structure of Oryza sativa HKT1;1
CryoEM
Release date: Dec. 11, 2024
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8y6j
Q-score: 0.485

Gao R, Jia Y, Xu X, Fu P, Zhou J, Yang G

J Integr Plant Biol (2024) 66 pp. 700-708 [ Pubmed: 38409933 DOI: doi:10.1111/jipb.13632 ]

EMD-38990
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Oryza sativa HKT1;5 salt sensitive variant
CryoEM
Release date: Dec. 11, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8y6l
Q-score: 0.462

Gao R, Jia Y, Xu X, Fu P, Zhou J, Yang G

J Integr Plant Biol (2024) 66 pp. 700-708 [ Pubmed: 38409933 DOI: doi:10.1111/jipb.13632 ]

EMD-38991
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The structure of Oryza sativa HKT2;1
CryoEM
Release date: Dec. 11, 2024
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8y6m
Q-score: 0.526

Gao R, Jia Y, Xu X, Fu P, Zhou J, Yang G

J Integr Plant Biol (2024) 66 pp. 700-708 [ Pubmed: 38409933 DOI: doi:10.1111/jipb.13632 ]

EMD-38992
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The structure of Oryza sativa HKT1;5 salt tolerant variant
CryoEM
Release date: Dec. 11, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8y6n
Q-score: 0.472

Gao R, Jia Y, Xu X, Fu P, Zhou J, Yang G

J Integr Plant Biol (2024) 66 pp. 700-708 [ Pubmed: 38409933 DOI: doi:10.1111/jipb.13632 ]

EMD-35634
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Wheat 80S ribosome stalled on AUG-Stop boron dependently
CryoEM
Release date: Feb. 21, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ip8
Q-score: 0.579

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

EMD-35635
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Wheat 40S ribosome in complex with a tRNAi
CryoEM
Release date: Feb. 21, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ip9
Q-score: 0.53

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

EMD-35637
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3D View
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
CryoEM
Release date: Feb. 21, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ipa
Q-score: 0.471

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [18]
  • RNA [9]
  • Ligand [6]

Organism

  • Oryza sativa [20]
  • Oryza sativa [7]
  • Triticum aestivum [4]
  • Oryza sativa indica group x oryza nivara [1]
  • Synthetic construct [1]
  • Arabidopsis thaliana [1]

EM Method

  • Single-particle [20]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [7]
  • 250-500 kDa [3]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [3]

Release Date

  • 2026 [1]
  • 2025 [2]
  • 2024 [8]
  • 2023 [6]
  • 2021 [3]

Author by name

  • Blaha GM [4]
  • Cao X [4]
  • Fu P [4]
  • Fujiwara T [4]
  • Gao R [4]
  • Hao Q [4]
  • Ito T [4]
  • Iwasaki S [4]
  • Jia Y [4]
  • Li Y [4]
  • Lin J [4]
  • Lu G [4]
  • Nishimoto M [4]
  • Saito H [4]
  • Shigematsu H [4]
  • Shirouzu M [4]
  • Sotta N [4]
  • Tanaka M [4]
  • Tsuda K [4]
  • Wu Z [4]
  • Xu X [4]
  • Yang G [4]
  • Yang GH [4]
  • Yokoyama T [4]
  • Yu Z [4]
  • Zhou J [4]
  • Wang J [3]
  • Chen Y [2]
  • Chen YL [2]
  • Chiu W [2]
  • Degregorio SJ [2]
  • Pabit SA [2]
  • Pollack L [2]
  • Steitz JA [2]
  • Su Z [2]
  • Torabi S [2]
  • Torabi SF [2]
  • Vaidya AT [2]
  • Zhang K [2]
  • Alguel Y [1]
  • Arold ST [1]
  • Babbar R [1]
  • Barrit JD [1]
  • Barritt JD [1]
  • Byrne B [1]
  • Cameron AD [1]
  • Cecchetti C [1]
  • Chen YH [1]
  • Choong YK [1]
  • Degregorio S [1]
  • Dobson RCJ [1]
  • Gong X [1]
  • Grover A [1]
  • Guo Y [1]
  • Han X [1]
  • Hu Q [1]
  • Huang X [1]
  • Huntington B [1]
  • Jagdev MK [1]
  • Jia YT [1]
  • Jian S [1]
  • Jobichen C [1]
  • Jones AME [1]
  • Lehmann S [1]
  • Li J [1]
  • Li Q [1]
  • Li QY [1]
  • Liu H [1]
  • Liu S [1]
  • Liu SM [1]
  • Mohan TC [1]
  • Mohapatra C [1]
  • Nie JW [1]
  • Pabit S [1]
  • Qin L [1]
  • Saharan K [1]
  • Samal A [1]
  • Saouros S [1]
  • Savva CG [1]
  • Scull NJ [1]
  • Shahul Hameed Uf [1]
  • Simpson P [1]
  • Sivaraman J [1]
  • Song B [1]
  • Steinchen W [1]
  • Steitz J [1]
  • Su M [1]
  • Tang LH [1]
  • Vaidya A [1]
  • Vancea AI [1]
  • Vasudevan D [1]
  • Wang B [1]
  • Wang H [1]
  • Wang MH [1]
  • Wang Y [1]
  • Wang Y-W [1]
  • Xiao H [1]
  • Xie Q [1]
  • Xu HE [1]
  • Xu RM [1]

Author by ORCID

  • Sotta N [4]
  • Lin J [4]
  • Gao R [4]
  • Jia Y [4]
  • Blaha GM [4]
  • Iwasaki S [4]
  • Cao X [4]
  • Yokoyama T [4]
  • Tanaka M [4]
  • Fujiwara T [4]
  • Yang G [4]
  • Shirouzu M [4]
  • Xu X [4]
  • Nishimoto M [4]
  • Lu G [4]
  • Ito T [4]
  • Shigematsu H [4]
  • Fu P [4]
  • Zhou J [4]
  • Chen YL [2]
  • Pabit SA [2]
  • Wang J [2]
  • Chiu W [2]
  • Su Z [2]
  • Pollack L [2]
  • Zhang K [2]
  • Torabi SF [2]
  • Arold ST [1]
  • Huntington B [1]
  • Jobichen C [1]
  • Zheng J [1]
  • Chen YH [1]
  • Byrne B [1]
  • Li J [1]
  • Shahul Hameed Uf [1]
  • Song B [1]
  • Xu RM [1]
  • Guo Y [1]
  • Xie Q [1]
  • Tang LH [1]
  • Vancea AI [1]
  • Qin L [1]
  • Jones AME [1]
  • Nie JW [1]
  • Savva CG [1]
  • Zhang XY [1]

Journal

  • J INTEGR PLANT BIOL [4]
  • NAT CHEM BIOL [4]
  • NUCLEIC ACIDS RES [4]
  • PNAS [2]
  • INT J BIOL MACROMOL [1]
  • NAT COMMUN [1]
  • NAT PLANTS [1]
  • PLANT CELL PHYSIOL [1]
  • SCI REP [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [6]
  • CRYOSPARC [3]
  • CTFFIND [2]

Microscope

  • FEI TITAN KRIOS [10]
  • FEI TALOS ARCTICA [3]
  • FEI TECNAI ARCTICA [3]
  • JEOL CRYO ARM 300 [2]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K3 6K X 4K [10]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [20]
  • AlphaFold DB [16]
  • PDBe-Kb [16]
  • UniProt [16]
  • Gene Ontology [15]
  • InterPro [15]
  • Pfam [14]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]